mRNA_Ecto-sp13_S_contig70.18042.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70.18042.1
Unique NamemRNA_Ecto-sp13_S_contig70.18042.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70.18042.1 vs. uniprot
Match: D8LKZ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKZ8_ECTSI)

HSP 1 Score: 541 bits (1395), Expect = 9.600e-191
Identity = 316/333 (94.89%), Postives = 318/333 (95.50%), Query Frame = 3 
Query:   57 MSCNRGAVVSVQYRDRAWDIKLNSAVNTACLERDTATLALELQAALNLSTPPVGLRLRVAPGAQAVICPLSAVIACPSYIATAYQGMSWFPLLEGGGDDHQEAPPNAPPATPQTQLPAPPSDDPLLPPPLGSPLDHELSFLATGGGFTASPSEGCGRPLTAPPGDRTRGITRPRPGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSHSGSPAWGSPHGFRCEETTTTAPEDAGARRPATAPVLRRQPSSNLSGSRNENGAFGERFGRGGSVEVNEETGGVAAAHHRPIPDGSGLGEDGRAVGGDVDWGWCGVGPARECWA 1055
            MS NRGAVVSVQY D AWDIKLN A NTACLERDTATLALELQAALNLSTPPVGLRLRVAPGAQAVICPLSAVIACPSYIATAYQGMSWFPLLEGGGDDHQEAPPNAPPA PQTQLPAPPSDDPLLPPPLGSPLDHELSFLATGGGFTASPSEGCGRPLTAPPGDRTRG+TRP PGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSHSGSPAWGSPHGFRCEETTTT  EDAGARRPATAP LRRQPSSNLSGSRNENG FGERFGRGGSVEVNEETGGVAAAHHRP+PDG GLG DGRAVGGDVDWGWCG GP RECWA
Sbjct:    1 MSFNRGAVVSVQYGDCAWDIKLNLAANTACLERDTATLALELQAALNLSTPPVGLRLRVAPGAQAVICPLSAVIACPSYIATAYQGMSWFPLLEGGGDDHQEAPPNAPPAAPQTQLPAPPSDDPLLPPPLGSPLDHELSFLATGGGFTASPSEGCGRPLTAPPGDRTRGMTRPHPGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSHSGSPAWGSPHGFRCEETTTTTAEDAGARRPATAPALRRQPSSNLSGSRNENGVFGERFGRGGSVEVNEETGGVAAAHHRPMPDGGGLGGDGRAVGGDVDWGWCGAGPTRECWA 333
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70.18042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKZ8_ECTSI9.600e-19194.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70contigEcto-sp13_S_contig70:28242..30696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1336
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_006150.1
Cds size1002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463960.5743427-UTR-Ecto-sp13_S_contig70:28241..285191681463960.5743427-UTR-Ecto-sp13_S_contig70:28241..28519Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig70 28242..28519 -
1681463960.6218474-UTR-Ecto-sp13_S_contig70:30136..301461681463960.6218474-UTR-Ecto-sp13_S_contig70:30136..30146Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig70 30137..30146 -
1681463960.6326911-UTR-Ecto-sp13_S_contig70:30650..306961681463960.6326911-UTR-Ecto-sp13_S_contig70:30650..30696Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig70 30651..30696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463960.584449-CDS-Ecto-sp13_S_contig70:28519..292651681463960.584449-CDS-Ecto-sp13_S_contig70:28519..29265Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70 28520..29265 -
1681463960.599525-CDS-Ecto-sp13_S_contig70:29880..301361681463960.599525-CDS-Ecto-sp13_S_contig70:29880..30136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70 29881..30136 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70.18042.1prot_Ecto-sp13_S_contig70.18042.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70 28520..30136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70.18042.1

>prot_Ecto-sp13_S_contig70.18042.1 ID=prot_Ecto-sp13_S_contig70.18042.1|Name=mRNA_Ecto-sp13_S_contig70.18042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=334bp
MSCNRGAVVSVQYRDRAWDIKLNSAVNTACLERDTATLALELQAALNLST
PPVGLRLRVAPGAQAVICPLSAVIACPSYIATAYQGMSWFPLLEGGGDDH
QEAPPNAPPATPQTQLPAPPSDDPLLPPPLGSPLDHELSFLATGGGFTAS
PSEGCGRPLTAPPGDRTRGITRPRPGRREGLGRPMSATPSDKSFGMRRIR
PGKSEGFGRPVTALPSDHSHSGSPAWGSPHGFRCEETTTTAPEDAGARRP
ATAPVLRRQPSSNLSGSRNENGAFGERFGRGGSVEVNEETGGVAAAHHRP
IPDGSGLGEDGRAVGGDVDWGWCGVGPARECWA*
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mRNA from alignment at Ecto-sp13_S_contig70:28242..30696-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70.18042.1 ID=mRNA_Ecto-sp13_S_contig70.18042.1|Name=mRNA_Ecto-sp13_S_contig70.18042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2455bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70:28242..30696- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTCACGCAAGCTTGAGAGAAGGGCTGTACAACGGAGACGTCCAGGTTC
GTGCGTGTGGTCGAGTTAGCGTAAGGTTGCAGTTGGATCGGGAGGGTGTC
GGTAAAAGGAGAGCGCGCATGTGGAAGGAAATCCTTGCAAAAATTCAGAA
CCTTCAGAGATCTTTGCTAAGCAGATGCTTCTCCGCCCGAGGATCGGAGT
CGGATCTCTCTCTCCTACGCGCGCGCGAGCTTAGATGCTGCTTTCAAGCC
ACATGGCTCAGCCGAACCATGCTTTGGACCTGTGCAACATGTAAAGCCGT
TCCCTTCTTTCCCAGAGCAGATCCTGGCAAACGAATGTATGTAGGGCTGT
ATATTGGTCTCTTTTCCGACCAAACTCATGGGTATTAGTCTATCCAGGCC
AAACACACACGGAGTACGCACTCCGTGCGTGGTTTGCACTACTTGTTGTC
ACTGAGGGTGACCTTCCAACCGCTACCTCTTTCTCTTTCCAACTCGGCAA
AACCAATCACCGGTTGCCCCCCAACTTCACTGCGCCGTGCAACTCCCCAG
AAAAAAAGTCATGTCATGCAACAGGGGTGCCGTCGTTTCAGTACAGTACC
GGGACCGCGCATGGGACATCAAGCTCAACTCGGCCGTAAACACCGCGTGT
CTTGAAAGAGACACCGCCACCTTAGCGCTAGAGTTACAAGCTGCGCTCAA
CCTCAGCACGCCTCCGGTCGGGCTGAGGCTACGCGTGGCACCCGGCGCTC
AGGCAGTGATTTGTCCGCTCAGCGCCGTGATCGCGTGTCCGTCGTACATC
GCCACCGCCTATCAAGGTGAGCTTTGGAAATGCCTTCTCGAGCGGCACCG
CTAACCGCTCCATGCGTACACAAGAATGAACCGGCGTGGCGTTTGTCTGA
CGCCCTTTTTTTTACCGGTTGTTCGGATTGTTGCACTCTGCTCCTATGCA
TATGTTCCTACCAACCGACCCAAGGTTCAACACAGCATAGACTGCTGTAG
ATGGTTCGATTATTTTCCGACAACATGCCAGGATATGTACAACAGCAGTC
GGGTAAACAATGCGGATTCCCTTCTCGGGAAAGACTATGGAGAATACGAA
CGCTTTTCAGTACAAAAAAACGCAAAACCACTGAAAATTCCGCCTGTGCT
CCTCTTCACGTTTTTGGTGCCCCTTGCTACATGTATGTATCGTGTACGAA
GGAAGAGCAGTACCGTAGGTCTTGCATTCCCCGGCCAAGTCCAGGTTTTT
TTCGTTCATCGCCCCTCCTTGACATCGCGCTTCACTCAGCAGCAGCAGCA
GCCTACAGGAGTCCTTGTTGTGTTTTTCATCTGGTAGGGATGTAGTCGTA
AACGTATGAGACCTCGCACCCTACAAAAGAACCCGCAGGAAGCACGAACA
ACTTCTCCCTTCCCTGAATCGACCAAAACAGGCATGTCTTGGTTCCCACT
ACTGGAAGGGGGAGGCGACGACCATCAAGAAGCACCACCCAATGCACCAC
CAGCAACACCGCAAACCCAACTGCCAGCGCCTCCCTCGGACGACCCTCTC
CTACCCCCACCCCTGGGGTCACCTCTGGATCACGAACTGTCCTTCCTAGC
GACCGGAGGAGGATTCACGGCGTCTCCCTCGGAGGGGTGTGGCCGTCCGC
TCACGGCGCCCCCCGGCGACCGCACGCGGGGAATCACGAGGCCGCGCCCG
GGCCGTCGAGAGGGCCTCGGCAGACCCATGTCGGCCACGCCCAGCGACAA
GAGCTTCGGGATGCGGCGGATCCGCCCGGGAAAGAGCGAGGGCTTCGGAA
GGCCCGTCACGGCGCTCCCCAGCGACCACAGCCACAGCGGCAGCCCCGCG
TGGGGAAGCCCGCACGGCTTCCGGTGCGAAGAGACCACCACCACCGCCCC
AGAGGACGCTGGTGCGCGCCGGCCGGCCACTGCTCCCGTGCTTCGGCGAC
AGCCCTCCTCGAATCTCAGCGGTTCGCGGAATGAGAACGGGGCGTTCGGC
GAGCGGTTCGGACGAGGGGGGTCTGTGGAGGTGAACGAGGAGACGGGAGG
GGTGGCTGCGGCGCATCATCGACCGATACCCGATGGCAGTGGCCTAGGGG
AAGATGGTCGTGCGGTGGGCGGTGACGTCGACTGGGGGTGGTGTGGAGTT
GGTCCGGCGAGGGAGTGTTGGGCGTAACGGGTCGTTCCGAGCGTGTAGGA
ATGAGCGTGTGAAGTGCACCAGCCCTGAATGTATCAGGTACGTAGGCAGG
CAGGATCGCCAATAGAAGGAAACGTGGAGTTTACACGCGAAGTGCAGTAT
ATACCCCCATTTGTTGTGTGTGCCCGTGCTGTGACTATGTGGGGCCAATA
GTGTGATGAGCCAAGTCGTGTCTGCAATAGGAAGATTGTTTGCTGCACTT
GCCCGCTGGCTAATGATCTACGGGGCCTCCGGGGGCTCCGTGGATGATGT
TGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70:28242..30696-

>mRNA_Ecto-sp13_S_contig70.18042.1 ID=mRNA_Ecto-sp13_S_contig70.18042.1|Name=mRNA_Ecto-sp13_S_contig70.18042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1002bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70:28242..30696- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATGCAACAGGGGTGCCGTCGTTTCAGTACAGTACCGGGACCGCGC
ATGGGACATCAAGCTCAACTCGGCCGTAAACACCGCGTGTCTTGAAAGAG
ACACCGCCACCTTAGCGCTAGAGTTACAAGCTGCGCTCAACCTCAGCACG
CCTCCGGTCGGGCTGAGGCTACGCGTGGCACCCGGCGCTCAGGCAGTGAT
TTGTCCGCTCAGCGCCGTGATCGCGTGTCCGTCGTACATCGCCACCGCCT
ATCAAGGCATGTCTTGGTTCCCACTACTGGAAGGGGGAGGCGACGACCAT
CAAGAAGCACCACCCAATGCACCACCAGCAACACCGCAAACCCAACTGCC
AGCGCCTCCCTCGGACGACCCTCTCCTACCCCCACCCCTGGGGTCACCTC
TGGATCACGAACTGTCCTTCCTAGCGACCGGAGGAGGATTCACGGCGTCT
CCCTCGGAGGGGTGTGGCCGTCCGCTCACGGCGCCCCCCGGCGACCGCAC
GCGGGGAATCACGAGGCCGCGCCCGGGCCGTCGAGAGGGCCTCGGCAGAC
CCATGTCGGCCACGCCCAGCGACAAGAGCTTCGGGATGCGGCGGATCCGC
CCGGGAAAGAGCGAGGGCTTCGGAAGGCCCGTCACGGCGCTCCCCAGCGA
CCACAGCCACAGCGGCAGCCCCGCGTGGGGAAGCCCGCACGGCTTCCGGT
GCGAAGAGACCACCACCACCGCCCCAGAGGACGCTGGTGCGCGCCGGCCG
GCCACTGCTCCCGTGCTTCGGCGACAGCCCTCCTCGAATCTCAGCGGTTC
GCGGAATGAGAACGGGGCGTTCGGCGAGCGGTTCGGACGAGGGGGGTCTG
TGGAGGTGAACGAGGAGACGGGAGGGGTGGCTGCGGCGCATCATCGACCG
ATACCCGATGGCAGTGGCCTAGGGGAAGATGGTCGTGCGGTGGGCGGTGA
CGTCGACTGGGGGTGGTGTGGAGTTGGTCCGGCGAGGGAGTGTTGGGCGT
AA
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