prot_Ecto-sp13_S_contig70.18040.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig70.18040.1
Unique Nameprot_Ecto-sp13_S_contig70.18040.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length244
Homology
BLAST of mRNA_Ecto-sp13_S_contig70.18040.1 vs. uniprot
Match: A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 3.210e-93
Identity = 218/245 (88.98%), Postives = 220/245 (89.80%), Query Frame = 0
Query:    1 MADAPKKGSGRVRKPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GAGMQNPSPRTHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIGLPGMGFQHPLPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 243
            MADAPKKGSGRVRKPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GAGMQNP PRTHP                   XXXXXXXXXXXXXXXXXXXXXXR+GLPGMGFQHPLPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAE+RQDAKLDWLFQDLS
Sbjct:    1 MADAPKKGSGRVRKPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVVGGAGMQNPPPRTHPPNPYPPGQQQQQVMVYPQHXXXXXXXXXXXXXXXXXXXXXXRMGLPGMGFQHPLPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLFQDLS 245          
BLAST of mRNA_Ecto-sp13_S_contig70.18040.1 vs. uniprot
Match: D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 1.510e-83
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0
Query:  106 IGLPGMGFQHPLPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 243
            +GLPGMGFQHP+PXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS
Sbjct:    1 MGLPGMGFQHPVPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 138          
BLAST of mRNA_Ecto-sp13_S_contig70.18040.1 vs. uniprot
Match: A0A835ZG91_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG91_9STRA)

HSP 1 Score: 144 bits (363), Expect = 5.730e-39
Identity = 79/136 (58.09%), Postives = 97/136 (71.32%), Query Frame = 0
Query:  111 MGFQHPLPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPR-----LRRVSADEIIEAQQEASAEERQDAKLDWLFQD 241
            M    P P      +FFPG+ASL EQLDK VMVVLRDGRHLVG+MRSYDQFSNIVLEDTHERHFV  ++GDI LGLY+VRGD++VL+GE+              L+RV+ADEI++AQQE+  +     K++W F D
Sbjct:  102 MPLGRPXPPVIAPPSFFPGAASLHEQLDKVVMVVLRDGRHLVGLMRSYDQFSNIVLEDTHERHFVGALYGDIPLGLYIVRGDSVVLLGEVAAEXXXXXXXXXALLKRVTADEILQAQQESDVDP---FKVEWDFGD 234          
BLAST of mRNA_Ecto-sp13_S_contig70.18040.1 vs. uniprot
Match: A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.090e-36
Identity = 70/115 (60.87%), Postives = 92/115 (80.00%), Query Frame = 0
Query:  126 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRL-RRVSADEIIEAQQEASAEERQDAKLDWLF 239
            FF G  SL EQLDK+++VVLRDGRHLVGV+RS+DQFSN+V+E+THERH V  IFGDI LGLY+VRGD +VL+GE+DE +E + +  RRVSA+EI+ AQ+  + E++   K+ W F
Sbjct:    4 FFAGGMSLVEQLDKKILVVLRDGRHLVGVLRSFDQFSNMVMENTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQR--NTEDK--TKVAWDF 114          
BLAST of mRNA_Ecto-sp13_S_contig70.18040.1 vs. uniprot
Match: K3WSU0_GLOUD (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU0_GLOUD)

HSP 1 Score: 132 bits (331), Expect = 1.390e-35
Identity = 64/115 (55.65%), Postives = 88/115 (76.52%), Query Frame = 0
Query:  126 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 239
            +FPGS SL EQLDK+++VVLRDGRHLVG +RS+DQFSNI+LEDT+ERH    +F DI LGL ++RGD +VL+GELDE +E + P ++R S +EI+EA++  +A+     +  W F
Sbjct:    4 YFPGSISLIEQLDKKILVVLRDGRHLVGYIRSFDQFSNIILEDTYERHVADGMFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRASIEEILEAEERLNAKGAASVREQWDF 118          
BLAST of mRNA_Ecto-sp13_S_contig70.18040.1 vs. uniprot
Match: A0A6V1WH12_HETAK (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WH12_HETAK)

HSP 1 Score: 125 bits (315), Expect = 3.130e-33
Identity = 65/112 (58.04%), Postives = 85/112 (75.89%), Query Frame = 0
Query:  128 PGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 239
            PG   L EQLDKR+++VL+DGRHL+G +RS+DQFSN+V+E+T ERH V   +GDI LGLYLVRGDA+VL+GE+D+   E   LRRVSADEI+E ++E  +     A+ DW F
Sbjct:    7 PGIMGLVEQLDKRILIVLQDGRHLIGTLRSFDQFSNVVIENTFERHVVDGCYGDIPLGLYLVRGDAVVLLGEVDDAGHEGI-LRRVSADEILELEREKESR----ARDDWDF 113          
BLAST of mRNA_Ecto-sp13_S_contig70.18040.1 vs. uniprot
Match: H3GH42_PHYRM (U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=Peronosporaceae TaxID=4777 RepID=H3GH42_PHYRM)

HSP 1 Score: 123 bits (309), Expect = 2.720e-32
Identity = 58/115 (50.43%), Postives = 86/115 (74.78%), Query Frame = 0
Query:  127 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQ 240
            FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQ+SNI+LEDT ERH    +F DI LGL ++RGD +VL+GELD  +E + P ++RV  +E++EA+++ +       +  W F+
Sbjct:    5 FPGNSSLIQQLDKQVLMVLRDGRHLVGYLRSFDQYSNIILEDTFERHVAGGLFCDIELGLNIIRGDNIVLLGELDSEKERDQPHMKRVELEEVLEAEEQLNEAGNTSVRQQWDFE 119          
BLAST of mRNA_Ecto-sp13_S_contig70.18040.1 vs. uniprot
Match: A0A7S2CG66_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG66_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.220e-31
Identity = 58/113 (51.33%), Postives = 85/113 (75.22%), Query Frame = 0
Query:  128 PGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQ 240
            PG+ASL +QLDKR+++VLRDGRHLVG++RS+DQFSN+VLEDTHERH    +  D++LGL++VRGD +VL+GELD  +E +  L     D ++EA++ ++       K++W F+
Sbjct:   16 PGAASLVDQLDKRILIVLRDGRHLVGILRSFDQFSNMVLEDTHERHVANGLRSDMALGLFIVRGDNIVLLGELDPEKEASSGLIDAEPDVVLEAERNSAF-----TKVEWDFE 123          
BLAST of mRNA_Ecto-sp13_S_contig70.18040.1 vs. uniprot
Match: A0A0P1A9M0_PLAHL (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9M0_PLAHL)

HSP 1 Score: 121 bits (303), Expect = 2.360e-31
Identity = 59/113 (52.21%), Postives = 85/113 (75.22%), Query Frame = 0
Query:  127 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWL 238
            FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQFSNI+LEDT+ERH    +F DI LGL ++RG  +VL+GELD  +E + P ++RV  +E++EA++  + E      L +L
Sbjct:    5 FPGNSSLIQQLDKQVLMVLRDGRHLVGNLRSFDQFSNIILEDTYERHVAGGLFCDIELGLNIIRGGNIVLLGELDSDKERDQPHMKRVKLEEVLEAEERLNEEGNTSLSLSFL 117          
BLAST of mRNA_Ecto-sp13_S_contig70.18040.1 vs. uniprot
Match: W4GB80_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB80_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.430e-31
Identity = 63/114 (55.26%), Postives = 85/114 (74.56%), Query Frame = 0
Query:  127 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 239
            FPG +SL EQLDK+++VVLRDGRHLVG++RS+DQFSNIVLE T ERH V + + DI LGLY++RG+ +VLMGELD+ +E E   L R SA+E++ A+ E + +     +  W F
Sbjct:    7 FPGVSSLVEQLDKQLLVVLRDGRHLVGIIRSFDQFSNIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQGLPTVRDAWNF 120          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70.18040.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKJ0_9PHAE3.210e-9388.98U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
D8LL00_ECTSI1.510e-8398.55U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A835ZG91_9STRA5.730e-3958.09U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=T... [more]
A0A7S2XVC4_9STRA3.090e-3660.87U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=F... [more]
K3WSU0_GLOUD1.390e-3555.65U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=G... [more]
A0A6V1WH12_HETAK3.130e-3358.04U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=H... [more]
H3GH42_PHYRM2.720e-3250.43U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=... [more]
A0A7S2CG66_9STRA1.220e-3151.33U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=D... [more]
A0A0P1A9M0_PLAHL2.360e-3152.21U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=P... [more]
W4GB80_9STRA2.430e-3155.26U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 131..199
e-value: 1.4E-17
score: 74.4
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 133..198
e-value: 1.8E-15
score: 56.4
NoneNo IPR availableGENE3D2.30.30.100coord: 130..237
e-value: 6.1E-31
score: 108.8
NoneNo IPR availablePANTHERPTHR15588LSM1coord: 125..233
NoneNo IPR availablePANTHERPTHR15588:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1coord: 125..233
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 131..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70contigEcto-sp13_S_contig70:19042..20851 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70.18040.1mRNA_Ecto-sp13_S_contig70.18040.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig70 19042..20851 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig70.18040.1 ID=prot_Ecto-sp13_S_contig70.18040.1|Name=mRNA_Ecto-sp13_S_contig70.18040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=244bp
MADAPKKGSGRVRKPQQQQQQQQQQQQQRPQAPQGGAAGAPRGARAAVVG
GAGMQNPSPRTHPPNPPPPGQQQQQVMVYPQHPQHHLQHHPQHPQHPQHP
QHPQRIGLPGMGFQHPLPPPPPPPAFFPGSASLFEQLDKRVMVVLRDGRH
LVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGEL
DETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf