mRNA_Ecto-sp13_S_contig7.18038.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7.18038.1
Unique NamemRNA_Ecto-sp13_S_contig7.18038.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7.18038.1 vs. uniprot
Match: A0A6H5K438_9PHAE (Herpes_ori_bp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K438_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.130e-54
Identity = 99/165 (60.00%), Postives = 120/165 (72.73%), Query Frame = 1 
Query:    1 LIILDEIRSTLKSAVCRETNGGYMNENMDKLQELIYMADRVVCADADLHIDGAVETFYASVFNGEEIHRINHTGGVQELHAKWASDAAFLRKIQQGLRDGKRAGVCCGSAKELKALEKMALEIVGKDEVGIYYANSANQAELADVHAHWSKYKLIGFTSTITVSV 495
            +II+DE+RSTL SA                   LIY ADRV+CADADL++DGAV+ FY +VF  EEIH I+H GG QELH ++   AAF++ I + LR GKR GVCCGSA ELK +EK+AL+IV K+++GIYYANS  QAE+ADV AHW KYKLIG TSTITVSV
Sbjct:  468 MIIMDELRSTLNSA-------------------LIYQADRVICADADLYVDGAVQCFYDTVFKNEEIHHIDHKGGGQELHVRFTDSAAFVKMILKDLRAGKRIGVCCGSALELKTIEKLALDIVHKEKLGIYYANSPQQAEIADVSAHWPKYKLIGLTSTITVSV 613
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7.18038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K438_9PHAE1.130e-5460.00Herpes_ori_bp domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7contigEcto-sp13_S_contig7:67924..68418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size495
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_001320.1
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463960.2061636-CDS-Ecto-sp13_S_contig7:67923..684181681463960.2061636-CDS-Ecto-sp13_S_contig7:67923..68418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7 67924..68418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7.18038.1prot_Ecto-sp13_S_contig7.18038.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7 67924..68418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7.18038.1

>prot_Ecto-sp13_S_contig7.18038.1 ID=prot_Ecto-sp13_S_contig7.18038.1|Name=mRNA_Ecto-sp13_S_contig7.18038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
LIILDEIRSTLKSAVCRETNGGYMNENMDKLQELIYMADRVVCADADLHI
DGAVETFYASVFNGEEIHRINHTGGVQELHAKWASDAAFLRKIQQGLRDG
KRAGVCCGSAKELKALEKMALEIVGKDEVGIYYANSANQAELADVHAHWS
KYKLIGFTSTITVSV
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mRNA from alignment at Ecto-sp13_S_contig7:67924..68418-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7.18038.1 ID=mRNA_Ecto-sp13_S_contig7.18038.1|Name=mRNA_Ecto-sp13_S_contig7.18038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:67924..68418- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGATCATCCTGGACGAGATACGGTCGACGCTCAAATCGGCCGTGTGCCG
CGAAACGAATGGTGGGTACATGAACGAGAACATGGACAAACTGCAAGAGC
TGATCTACATGGCAGACCGCGTGGTTTGCGCCGATGCCGACCTGCACATC
GACGGGGCAGTCGAGACCTTCTACGCATCCGTGTTCAACGGAGAGGAAAT
CCACCGGATCAATCACACCGGGGGGGTGCAGGAGCTCCACGCGAAGTGGG
CAAGCGATGCCGCGTTCCTTCGCAAGATTCAGCAGGGTTTACGAGACGGG
AAGAGGGCCGGGGTGTGCTGCGGGTCGGCCAAGGAGCTCAAGGCGCTCGA
GAAGATGGCCCTGGAGATCGTCGGGAAGGACGAGGTGGGTATATACTACG
CCAACTCTGCGAACCAGGCGGAGCTGGCCGACGTGCACGCCCACTGGTCG
AAGTACAAGCTCATTGGCTTCACATCGACAATCACCGTGAGCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7:67924..68418-

>mRNA_Ecto-sp13_S_contig7.18038.1 ID=mRNA_Ecto-sp13_S_contig7.18038.1|Name=mRNA_Ecto-sp13_S_contig7.18038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:67924..68418- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGATCATCCTGGACGAGATACGGTCGACGCTCAAATCGGCCGTGTGCCG
CGAAACGAATGGTGGGTACATGAACGAGAACATGGACAAACTGCAAGAGC
TGATCTACATGGCAGACCGCGTGGTTTGCGCCGATGCCGACCTGCACATC
GACGGGGCAGTCGAGACCTTCTACGCATCCGTGTTCAACGGAGAGGAAAT
CCACCGGATCAATCACACCGGGGGGGTGCAGGAGCTCCACGCGAAGTGGG
CAAGCGATGCCGCGTTCCTTCGCAAGATTCAGCAGGGTTTACGAGACGGG
AAGAGGGCCGGGGTGTGCTGCGGGTCGGCCAAGGAGCTCAAGGCGCTCGA
GAAGATGGCCCTGGAGATCGTCGGGAAGGACGAGGTGGGTATATACTACG
CCAACTCTGCGAACCAGGCGGAGCTGGCCGACGTGCACGCCCACTGGTCG
AAGTACAAGCTCATTGGCTTCACATCGACAATCACCGTGAGCGTC
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