mRNA_Ecto-sp13_S_contig7.18034.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7.18034.1
Unique NamemRNA_Ecto-sp13_S_contig7.18034.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7.18034.1 vs. uniprot
Match: Q6XM80_9PHYC (FirrV-1-A7 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM80_9PHYC)

HSP 1 Score: 71.2 bits (173), Expect = 2.110e-12
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:  163 KKTPVTRKKTEKSVSINTGKIRRKSLVDDVSGAFKPYYAKPRGK--FIFFDENTNDFRSPER-WGTALIYGESAKLFVKDGWKVWVVEGIPPSY 435
            K TPV+  K  K        I RKS  D VS  FKPYY KPRG   +IF+  N  +FR+P   +G+ L++G++AK FV DG+KV+VV+ +P  +
Sbjct:  108 KSTPVSESKATKPRGEGPT-ITRKSSFDKVSVTFKPYYTKPRGDSGWIFWVINEKNFRTPHHGFGSGLLHGQTAKQFVADGYKVYVVKEVPAPW 200
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BLAST of mRNA_Ecto-sp13_S_contig7.18034.1 vs. uniprot
Match: A0A481YQU5_9VIRU (Uncharacterized protein (Fragment) n=1 Tax=Iridovirus LCIVAC01 TaxID=2506607 RepID=A0A481YQU5_9VIRU)

HSP 1 Score: 68.6 bits (166), Expect = 2.140e-11
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:    7 CKKKTTKKYSTRPSPPYPAAQCCIGSKKRGNSGSMYVVKSNVNGIKRWVKATKKTPVTRKKTEKSVSINTGKIRRKSLVDDVSGAFKPYYAKPRGKFIFFDENTN---------DFRSPERW 345
            C K+TTK+Y+ RPSPPYPA +CC G KKRGN G M++ K    GI RWVK+T K     +K+    S    K  R   V D +GA +P+  K + + ++  + +N         DF SP+ +
Sbjct:    4 CVKRTTKRYTDRPSPPYPANECC-GKKKRGNDGRMWLSKKYERGICRWVKSTSKA----RKSRIRKSQGGLKGGRNYYVHD-NGA-RPFMVKVKKRTVWVYKLSNSDTDGYSDRDFESPKNY 118
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BLAST of mRNA_Ecto-sp13_S_contig7.18034.1 vs. uniprot
Match: A0A6C0E4A1_9ZZZZ (Uncharacterized protein n=2 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0E4A1_9ZZZZ)

HSP 1 Score: 58.5 bits (140), Expect = 2.050e-8
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    7 CKKKTTKKYSTRPSPPYPAAQCCIGSKKRGNSGSMYVVKSNVNGIKRWV 153
            C K  TKKY TRPSPP+PA +C  G  K+GN+G M+  K +VNG+ +WV
Sbjct:    7 CVKDNTKKYKTRPSPPFPANKC-KGKTKKGNNGKMFKSKPDVNGVHKWV 54
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BLAST of mRNA_Ecto-sp13_S_contig7.18034.1 vs. uniprot
Match: A0A6C0I4T1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0I4T1_9ZZZZ)

HSP 1 Score: 54.7 bits (130), Expect = 4.140e-7
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    7 CKKKTTKKYSTRPSPPYPAAQCCIGSKKRGNSGSMYVVKSNVNGIKRWVK 156
            C  +TTKKY +RPSPPYPA +CC G    GN G+ Y+   N +GI  W K
Sbjct:   37 CIMQTTKKYLSRPSPPYPANKCC-GKTMTGNDGAQYIAAPNASGICAWKK 85
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BLAST of mRNA_Ecto-sp13_S_contig7.18034.1 vs. uniprot
Match: A0A6C0EKM5_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0EKM5_9ZZZZ)

HSP 1 Score: 52.8 bits (125), Expect = 2.190e-5
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    7 CKKKTTKKYSTRPSPPYPAAQCCIGSKKRGNSGSMYVVKSNVNGIKRW 150
            C ++TTKKY +RPSPP+PA +CC G  K GN+G ++  K N  GI +W
Sbjct:  186 CTRQTTKKYRSRPSPPFPANKCC-GKTKMGNNGILWRSKLNSAGICQW 232
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BLAST of mRNA_Ecto-sp13_S_contig7.18034.1 vs. uniprot
Match: A0A6C0KUA0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KUA0_9ZZZZ)

HSP 1 Score: 48.1 bits (113), Expect = 9.360e-5
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:    7 CKKKTTKKYSTRPSPPYPAAQCCIGSKKRGNSGSMYVVKSNVN-GIKRWVKATKKTPVTRKKTEK 198
            C ++TTKKY+ R SPPYPA +C    + +GN G MY+       GI RW+     T  TRKK +K
Sbjct:   12 CIRQTTKKYTQRSSPPYPAQEC-PNKRMKGNDGKMYISHMGTETGIYRWIP----TNETRKKNKK 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7.18034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Q6XM80_9PHYC2.110e-1244.68FirrV-1-A7 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A481YQU5_9VIRU2.140e-1139.34Uncharacterized protein (Fragment) n=1 Tax=Iridovi... [more]
A0A6C0E4A1_9ZZZZ2.050e-855.10Uncharacterized protein n=2 Tax=viral metagenome T... [more]
A0A6C0I4T1_9ZZZZ4.140e-752.00Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0EKM5_9ZZZZ2.190e-552.08Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0KUA0_9ZZZZ9.360e-544.62Uncharacterized protein n=1 Tax=viral metagenome T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7contigEcto-sp13_S_contig7:44509..44955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size447
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463959.8326414-CDS-Ecto-sp13_S_contig7:44508..449551681463959.8326414-CDS-Ecto-sp13_S_contig7:44508..44955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7 44509..44955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7.18034.1prot_Ecto-sp13_S_contig7.18034.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7 44509..44955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7.18034.1

>prot_Ecto-sp13_S_contig7.18034.1 ID=prot_Ecto-sp13_S_contig7.18034.1|Name=mRNA_Ecto-sp13_S_contig7.18034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MPCKKKTTKKYSTRPSPPYPAAQCCIGSKKRGNSGSMYVVKSNVNGIKRW
VKATKKTPVTRKKTEKSVSINTGKIRRKSLVDDVSGAFKPYYAKPRGKFI
FFDENTNDFRSPERWGTALIYGESAKLFVKDGWKVWVVEGIPPSYGRR*
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mRNA from alignment at Ecto-sp13_S_contig7:44509..44955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7.18034.1 ID=mRNA_Ecto-sp13_S_contig7.18034.1|Name=mRNA_Ecto-sp13_S_contig7.18034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:44509..44955+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTGTAAGAAAAAGACTACTAAAAAGTATTCCACGCGACCCAGCCC
TCCCTACCCAGCAGCACAGTGTTGCATAGGATCCAAAAAGCGAGGAAACA
GCGGTAGCATGTATGTTGTGAAATCCAACGTAAATGGTATCAAGCGTTGG
GTGAAAGCTACCAAGAAGACTCCGGTGACCAGGAAGAAAACAGAGAAGTC
CGTGTCCATTAATACGGGGAAGATCAGGAGGAAGTCGTTGGTTGATGATG
TTAGTGGTGCGTTCAAGCCGTATTATGCAAAGCCCAGAGGAAAGTTCATA
TTTTTCGACGAAAATACCAATGATTTCCGTTCCCCAGAGAGGTGGGGTAC
CGCGTTGATCTATGGGGAATCTGCTAAGTTGTTCGTGAAGGACGGTTGGA
AGGTTTGGGTGGTTGAAGGTATTCCACCGTCATATGGGCGAAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7:44509..44955+

>mRNA_Ecto-sp13_S_contig7.18034.1 ID=mRNA_Ecto-sp13_S_contig7.18034.1|Name=mRNA_Ecto-sp13_S_contig7.18034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:44509..44955+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTGTAAGAAAAAGACTACTAAAAAGTATTCCACGCGACCCAGCCC
TCCCTACCCAGCAGCACAGTGTTGCATAGGATCCAAAAAGCGAGGAAACA
GCGGTAGCATGTATGTTGTGAAATCCAACGTAAATGGTATCAAGCGTTGG
GTGAAAGCTACCAAGAAGACTCCGGTGACCAGGAAGAAAACAGAGAAGTC
CGTGTCCATTAATACGGGGAAGATCAGGAGGAAGTCGTTGGTTGATGATG
TTAGTGGTGCGTTCAAGCCGTATTATGCAAAGCCCAGAGGAAAGTTCATA
TTTTTCGACGAAAATACCAATGATTTCCGTTCCCCAGAGAGGTGGGGTAC
CGCGTTGATCTATGGGGAATCTGCTAAGTTGTTCGTGAAGGACGGTTGGA
AGGTTTGGGTGGTTGAAGGTATTCCACCGTCATATGGGCGAAGGTAG
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