mRNA_Ecto-sp13_S_contig7.18033.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7.18033.1
Unique NamemRNA_Ecto-sp13_S_contig7.18033.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7.18033.1 vs. uniprot
Match: B5LWK0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK0_9PHYC)

HSP 1 Score: 119 bits (297), Expect = 7.760e-31
Identity = 64/171 (37.43%), Postives = 109/171 (63.74%), Query Frame = 1 
Query:    1 AEKNINFSDHAREQLFDSDWSPSSLKLMESWYNKCMKASQSHIEAAIAARKRHVRVALPSIVVGSAATGIAFFSVGDECDETSAGRAEATAISVSLAVLTSALSVLGGFTALFALSERQQAHTTAAANFQNLARKIQLTLFIPAKLRNSCELKLSEASAEYNHIVESSPVV 513
            ++++   S+   E++F++DW+ +SL L+E  + +C   S ++ +AA  AR +H  V++P+IVV S AT  +FFS G  CD+      E TA+ +S+A+LTS  ++LGG +AL++   +  A   A+ NF  LA+K QL +F+  +LR   E+ L+E SAE+ H+  +SP++
Sbjct:    2 SDQDARLSNFEAERVFENDWTNASLDLLEGLHKQCKDNSSAYADAARVARWKHRAVSIPTIVVASFATATSFFSAGSSCDDDE----ENTAVKISVAILTSITAILGGVSALYSFDSKTTACIAASGNFDALAKKAQLQIFLSNQLRGPVEVVLTEISAEFCHLTNTSPLL 168
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BLAST of mRNA_Ecto-sp13_S_contig7.18033.1 vs. uniprot
Match: Q6XM51_9PHYC (FirrV-1-A36 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM51_9PHYC)

HSP 1 Score: 100 bits (248), Expect = 1.850e-23
Identity = 55/159 (34.59%), Postives = 95/159 (59.75%), Query Frame = 1 
Query:   37 EQLFDSDWSPSSLKLMESWYNKCMKASQSHIEAAIAARKRHVRVALPSIVVGSAATGIAFFSVGDECDETSAGRAEATAISVSLAVLTSALSVLGGFTALFALSERQQAHTTAAANFQNLARKIQLTLFIPAKLRNSCELKLSEASAEYNHIVESSPVV 513
            E++FD+ W+ +S+ L+E    +C   + ++  AA  AR ++  +++PSIVV S AT  +FFS G  C+       E+ AI + +A+LTS  ++L G T L++   +  A   A+ NF  LA++ Q+ +++   LR   E+ L+E SAEY H+  +SP++
Sbjct:   17 EKIFDNGWTNASMDLLEDMCKQCRTNASAYARAARTARWKYRMLSIPSIVVASFATATSFFSAGSSCE-----AEESNAIKICVAILTSITAILHGVTHLYSFDSKMTACIAASGNFDALAKQAQMQIYLSNNLRGPVEVILTEISAEYCHLTNTSPLL 170
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7.18033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWK0_9PHYC7.760e-3137.43Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM51_9PHYC1.850e-2334.59FirrV-1-A36 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7contigEcto-sp13_S_contig7:41084..41608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size525
Hectar predicted targeting categoryother localisation
Exons1
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463959.7796679-CDS-Ecto-sp13_S_contig7:41083..416081681463959.7796679-CDS-Ecto-sp13_S_contig7:41083..41608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7 41084..41608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7.18033.1prot_Ecto-sp13_S_contig7.18033.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7 41084..41608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7.18033.1

>prot_Ecto-sp13_S_contig7.18033.1 ID=prot_Ecto-sp13_S_contig7.18033.1|Name=mRNA_Ecto-sp13_S_contig7.18033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp
AEKNINFSDHAREQLFDSDWSPSSLKLMESWYNKCMKASQSHIEAAIAAR
KRHVRVALPSIVVGSAATGIAFFSVGDECDETSAGRAEATAISVSLAVLT
SALSVLGGFTALFALSERQQAHTTAAANFQNLARKIQLTLFIPAKLRNSC
ELKLSEASAEYNHIVESSPVVYGW*
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mRNA from alignment at Ecto-sp13_S_contig7:41084..41608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7.18033.1 ID=mRNA_Ecto-sp13_S_contig7.18033.1|Name=mRNA_Ecto-sp13_S_contig7.18033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:41084..41608+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGAAAAATATCAACTTCTCAGATCATGCGCGAGAACAATTGTTCGA
CTCGGACTGGAGCCCCAGCTCGTTGAAGCTGATGGAGAGCTGGTACAATA
AATGCATGAAAGCTTCTCAGAGCCATATAGAAGCGGCTATCGCCGCAAGG
AAACGGCACGTGCGCGTGGCACTGCCCAGCATAGTGGTGGGAAGCGCTGC
CACGGGCATAGCTTTCTTCAGCGTAGGGGACGAGTGTGACGAAACAAGCG
CGGGCCGCGCGGAGGCTACCGCAATCAGTGTTTCCTTGGCTGTCCTCACG
TCCGCGTTATCGGTGCTCGGAGGGTTCACGGCCCTTTTTGCCTTGTCAGA
GCGCCAGCAAGCGCACACGACAGCTGCCGCAAACTTCCAAAACCTCGCGC
GGAAGATACAACTAACCCTGTTCATACCAGCAAAATTACGTAACTCGTGT
GAACTGAAATTGTCTGAGGCCTCTGCAGAATACAATCACATTGTCGAGTC
TTCGCCCGTAGTGTACGGGTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7:41084..41608+

>mRNA_Ecto-sp13_S_contig7.18033.1 ID=mRNA_Ecto-sp13_S_contig7.18033.1|Name=mRNA_Ecto-sp13_S_contig7.18033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:41084..41608+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGAAAAATATCAACTTCTCAGATCATGCGCGAGAACAATTGTTCGA
CTCGGACTGGAGCCCCAGCTCGTTGAAGCTGATGGAGAGCTGGTACAATA
AATGCATGAAAGCTTCTCAGAGCCATATAGAAGCGGCTATCGCCGCAAGG
AAACGGCACGTGCGCGTGGCACTGCCCAGCATAGTGGTGGGAAGCGCTGC
CACGGGCATAGCTTTCTTCAGCGTAGGGGACGAGTGTGACGAAACAAGCG
CGGGCCGCGCGGAGGCTACCGCAATCAGTGTTTCCTTGGCTGTCCTCACG
TCCGCGTTATCGGTGCTCGGAGGGTTCACGGCCCTTTTTGCCTTGTCAGA
GCGCCAGCAAGCGCACACGACAGCTGCCGCAAACTTCCAAAACCTCGCGC
GGAAGATACAACTAACCCTGTTCATACCAGCAAAATTACGTAACTCGTGT
GAACTGAAATTGTCTGAGGCCTCTGCAGAATACAATCACATTGTCGAGTC
TTCGCCCGTAGTGTACGGGTGGTGA
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