mRNA_Ecto-sp13_S_contig7.18032.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: A0A0K1XGT5_9GAMM (HNHc domain-containing protein n=1 Tax=Thiopseudomonas alkaliphila TaxID=1697053 RepID=A0A0K1XGT5_9GAMM) HSP 1 Score: 51.2 bits (121), Expect = 1.020e-6 Identity = 27/64 (42.19%), Postives = 34/64 (53.12%), Query Frame = 1
Query: 10 KFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLC-TPCHRRKTALE 198
K REQ++ C +C E +DHI+PL AGG A N+ VLC +PCH KTA E
Sbjct: 38 KLREQIILRDKQICQHCGLLALEPE-----VDHIVPLAAGGTDAPDNLQVLCKSPCHANKTARE 96
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: UPI001BB2C094 (HNH endonuclease n=1 Tax=Streptomyces sp. jing01 TaxID=2726118 RepID=UPI001BB2C094) HSP 1 Score: 50.4 bits (119), Expect = 2.270e-6 Identity = 24/63 (38.10%), Postives = 33/63 (52.38%), Query Frame = 1
Query: 1 DCTKFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKT 189
D ++ R +VL C C G ++DH++P+ GG LSN+ VLC PCHR KT
Sbjct: 45 DWSRRRARVLARDRFTCQRC------GARERLEVDHVVPVARGGSWELSNLWVLCAPCHRLKT 101
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: A0A068QZV2_9GAMM (HNHc domain-containing protein n=2 Tax=Xenorhabdus TaxID=626 RepID=A0A068QZV2_9GAMM) HSP 1 Score: 50.1 bits (118), Expect = 3.830e-6 Identity = 25/63 (39.68%), Postives = 32/63 (50.79%), Query Frame = 1
Query: 10 KFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKTALE 198
K R + C C + + +DHIIP GG ALSN+ +LC PCH+RKTA E
Sbjct: 53 KLRTTIKHRDKQLCQQCLRQGRAT--TGTTVDHIIPKAHGGTDALSNLELLCWPCHKRKTATE 113
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: UPI000B34D5BB (HNH endonuclease n=1 Tax=Xenorhabdus innexi TaxID=290109 RepID=UPI000B34D5BB) HSP 1 Score: 49.3 bits (116), Expect = 7.640e-6 Identity = 25/64 (39.06%), Postives = 34/64 (53.12%), Query Frame = 1
Query: 10 KFREQVLEEQGHKCNYCACKVSFGE-YSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKTALE 198
K R + + H C C + G + +DHI P GG ALSN+ +LC PCH++KTA E
Sbjct: 53 KLRATIKQRDKHLCQQC---LRTGRAVTGTTVDHIKPKAHGGTDALSNLMLLCWPCHQKKTATE 113
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: UPI001FAFFFFB (HNH endonuclease n=1 Tax=Cuspidothrix issatschenkoi TaxID=230752 RepID=UPI001FAFFFFB) HSP 1 Score: 48.1 bits (113), Expect = 1.140e-5 Identity = 22/62 (35.48%), Postives = 33/62 (53.23%), Query Frame = 1
Query: 7 TKFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKTA 192
+ R+ V++ C YC C G+ + D+DHIIP+ AGG N+ + C C RK+A
Sbjct: 6 SSLRQLVIQRAKDICEYC-CLSQAGQAATFDIDHIIPVVAGGATTSDNLALACVSCSLRKSA 66
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: A0A2D0KBT1_9GAMM (HNH endonuclease n=1 Tax=Xenorhabdus ishibashii TaxID=1034471 RepID=A0A2D0KBT1_9GAMM) HSP 1 Score: 48.1 bits (113), Expect = 2.150e-5 Identity = 23/63 (36.51%), Postives = 32/63 (50.79%), Query Frame = 1
Query: 10 KFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKTALE 198
K R ++ H C C + + +DHI P GG L+N+ +LC PCH+RKTA E
Sbjct: 53 KLRARIKARDKHLCQQCLREGRA--ITGTTVDHIKPKAHGGTDELTNLELLCFPCHKRKTATE 113
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: UPI0013DDF3AB (HNH endonuclease n=1 Tax=Streptomyces sp. ADI95-16 TaxID=1522758 RepID=UPI0013DDF3AB) HSP 1 Score: 47.4 bits (111), Expect = 4.350e-5 Identity = 21/63 (33.33%), Postives = 32/63 (50.79%), Query Frame = 1
Query: 10 KFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKTALE 198
+ R +L H+C C G ++DHI+P++AGG + N+ C+ CHR KT E
Sbjct: 53 RLRLSILRRDSHRCYLC------GNPKANEVDHIVPVSAGGTDSPLNLAACCSTCHRAKTQRE 109
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: A0A6M4PDL0_9ACTN (HNH endonuclease n=1 Tax=Streptomyces sp. jing01 TaxID=2726118 RepID=A0A6M4PDL0_9ACTN) HSP 1 Score: 45.4 bits (106), Expect = 4.600e-5 Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 1
Query: 100 MDHIIPLNAGGEQALSNVHVLCTPCHRRKT 189
MDH++P+ GG LSN+ VLC PCHR KT
Sbjct: 1 MDHVVPVARGGSWELSNLWVLCAPCHRLKT 30
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: UPI001D080EF7 (HNH endonuclease n=2 Tax=Clostridium scindens (strain JCM 10418 / VPI 12708) TaxID=29347 RepID=UPI001D080EF7) HSP 1 Score: 47.8 bits (112), Expect = 6.980e-5 Identity = 22/60 (36.67%), Postives = 31/60 (51.67%), Query Frame = 1
Query: 7 TKFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRK 186
T+ R + +C C K+ F ++A MDHIIPL GGE SN+ + C C+ K
Sbjct: 76 TEVRRMIYNNADGRCQLCGRKIMF---TDASMDHIIPLALGGEDCESNLQLACKVCNGAK 132
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: UPI0019FEC1FB (HNH endonuclease n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI0019FEC1FB) HSP 1 Score: 46.6 bits (109), Expect = 8.040e-5 Identity = 21/60 (35.00%), Postives = 29/60 (48.33%), Query Frame = 1
Query: 13 FREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKTA 192
R ++C YC G+ + +DHIIP+NAGGE N+ + C C RK A
Sbjct: 8 LRRFTTNRAKNRCEYCGIS-QLGQVATFHIDHIIPVNAGGETVADNLALACVSCSLRKGA 66 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7.18032.1 >prot_Ecto-sp13_S_contig7.18032.1 ID=prot_Ecto-sp13_S_contig7.18032.1|Name=mRNA_Ecto-sp13_S_contig7.18032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp DCTKFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNback to top mRNA from alignment at Ecto-sp13_S_contig7:38081..38278+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7.18032.1 ID=mRNA_Ecto-sp13_S_contig7.18032.1|Name=mRNA_Ecto-sp13_S_contig7.18032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:38081..38278+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7:38081..38278+ >mRNA_Ecto-sp13_S_contig7.18032.1 ID=mRNA_Ecto-sp13_S_contig7.18032.1|Name=mRNA_Ecto-sp13_S_contig7.18032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:38081..38278+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |