mRNA_Ecto-sp13_S_contig7.18032.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7.18032.1
Unique NamemRNA_Ecto-sp13_S_contig7.18032.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: A0A0K1XGT5_9GAMM (HNHc domain-containing protein n=1 Tax=Thiopseudomonas alkaliphila TaxID=1697053 RepID=A0A0K1XGT5_9GAMM)

HSP 1 Score: 51.2 bits (121), Expect = 1.020e-6
Identity = 27/64 (42.19%), Postives = 34/64 (53.12%), Query Frame = 1
Query:   10 KFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLC-TPCHRRKTALE 198
            K REQ++      C +C       E     +DHI+PL AGG  A  N+ VLC +PCH  KTA E
Sbjct:   38 KLREQIILRDKQICQHCGLLALEPE-----VDHIVPLAAGGTDAPDNLQVLCKSPCHANKTARE 96          
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: UPI001BB2C094 (HNH endonuclease n=1 Tax=Streptomyces sp. jing01 TaxID=2726118 RepID=UPI001BB2C094)

HSP 1 Score: 50.4 bits (119), Expect = 2.270e-6
Identity = 24/63 (38.10%), Postives = 33/63 (52.38%), Query Frame = 1
Query:    1 DCTKFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKT 189
            D ++ R +VL      C  C      G     ++DH++P+  GG   LSN+ VLC PCHR KT
Sbjct:   45 DWSRRRARVLARDRFTCQRC------GARERLEVDHVVPVARGGSWELSNLWVLCAPCHRLKT 101          
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: A0A068QZV2_9GAMM (HNHc domain-containing protein n=2 Tax=Xenorhabdus TaxID=626 RepID=A0A068QZV2_9GAMM)

HSP 1 Score: 50.1 bits (118), Expect = 3.830e-6
Identity = 25/63 (39.68%), Postives = 32/63 (50.79%), Query Frame = 1
Query:   10 KFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKTALE 198
            K R  +       C  C  +      +   +DHIIP   GG  ALSN+ +LC PCH+RKTA E
Sbjct:   53 KLRTTIKHRDKQLCQQCLRQGRAT--TGTTVDHIIPKAHGGTDALSNLELLCWPCHKRKTATE 113          
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: UPI000B34D5BB (HNH endonuclease n=1 Tax=Xenorhabdus innexi TaxID=290109 RepID=UPI000B34D5BB)

HSP 1 Score: 49.3 bits (116), Expect = 7.640e-6
Identity = 25/64 (39.06%), Postives = 34/64 (53.12%), Query Frame = 1
Query:   10 KFREQVLEEQGHKCNYCACKVSFGE-YSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKTALE 198
            K R  + +   H C  C   +  G   +   +DHI P   GG  ALSN+ +LC PCH++KTA E
Sbjct:   53 KLRATIKQRDKHLCQQC---LRTGRAVTGTTVDHIKPKAHGGTDALSNLMLLCWPCHQKKTATE 113          
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: UPI001FAFFFFB (HNH endonuclease n=1 Tax=Cuspidothrix issatschenkoi TaxID=230752 RepID=UPI001FAFFFFB)

HSP 1 Score: 48.1 bits (113), Expect = 1.140e-5
Identity = 22/62 (35.48%), Postives = 33/62 (53.23%), Query Frame = 1
Query:    7 TKFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKTA 192
            +  R+ V++     C YC C    G+ +  D+DHIIP+ AGG     N+ + C  C  RK+A
Sbjct:    6 SSLRQLVIQRAKDICEYC-CLSQAGQAATFDIDHIIPVVAGGATTSDNLALACVSCSLRKSA 66          
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: A0A2D0KBT1_9GAMM (HNH endonuclease n=1 Tax=Xenorhabdus ishibashii TaxID=1034471 RepID=A0A2D0KBT1_9GAMM)

HSP 1 Score: 48.1 bits (113), Expect = 2.150e-5
Identity = 23/63 (36.51%), Postives = 32/63 (50.79%), Query Frame = 1
Query:   10 KFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKTALE 198
            K R ++     H C  C  +      +   +DHI P   GG   L+N+ +LC PCH+RKTA E
Sbjct:   53 KLRARIKARDKHLCQQCLREGRA--ITGTTVDHIKPKAHGGTDELTNLELLCFPCHKRKTATE 113          
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: UPI0013DDF3AB (HNH endonuclease n=1 Tax=Streptomyces sp. ADI95-16 TaxID=1522758 RepID=UPI0013DDF3AB)

HSP 1 Score: 47.4 bits (111), Expect = 4.350e-5
Identity = 21/63 (33.33%), Postives = 32/63 (50.79%), Query Frame = 1
Query:   10 KFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKTALE 198
            + R  +L    H+C  C      G     ++DHI+P++AGG  +  N+   C+ CHR KT  E
Sbjct:   53 RLRLSILRRDSHRCYLC------GNPKANEVDHIVPVSAGGTDSPLNLAACCSTCHRAKTQRE 109          
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: A0A6M4PDL0_9ACTN (HNH endonuclease n=1 Tax=Streptomyces sp. jing01 TaxID=2726118 RepID=A0A6M4PDL0_9ACTN)

HSP 1 Score: 45.4 bits (106), Expect = 4.600e-5
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 1
Query:  100 MDHIIPLNAGGEQALSNVHVLCTPCHRRKT 189
            MDH++P+  GG   LSN+ VLC PCHR KT
Sbjct:    1 MDHVVPVARGGSWELSNLWVLCAPCHRLKT 30          
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: UPI001D080EF7 (HNH endonuclease n=2 Tax=Clostridium scindens (strain JCM 10418 / VPI 12708) TaxID=29347 RepID=UPI001D080EF7)

HSP 1 Score: 47.8 bits (112), Expect = 6.980e-5
Identity = 22/60 (36.67%), Postives = 31/60 (51.67%), Query Frame = 1
Query:    7 TKFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRK 186
            T+ R  +      +C  C  K+ F   ++A MDHIIPL  GGE   SN+ + C  C+  K
Sbjct:   76 TEVRRMIYNNADGRCQLCGRKIMF---TDASMDHIIPLALGGEDCESNLQLACKVCNGAK 132          
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Match: UPI0019FEC1FB (HNH endonuclease n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI0019FEC1FB)

HSP 1 Score: 46.6 bits (109), Expect = 8.040e-5
Identity = 21/60 (35.00%), Postives = 29/60 (48.33%), Query Frame = 1
Query:   13 FREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSNVHVLCTPCHRRKTA 192
             R        ++C YC      G+ +   +DHIIP+NAGGE    N+ + C  C  RK A
Sbjct:    8 LRRFTTNRAKNRCEYCGIS-QLGQVATFHIDHIIPVNAGGETVADNLALACVSCSLRKGA 66          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7.18032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A0K1XGT5_9GAMM1.020e-642.19HNHc domain-containing protein n=1 Tax=Thiopseudom... [more]
UPI001BB2C0942.270e-638.10HNH endonuclease n=1 Tax=Streptomyces sp. jing01 T... [more]
A0A068QZV2_9GAMM3.830e-639.68HNHc domain-containing protein n=2 Tax=Xenorhabdus... [more]
UPI000B34D5BB7.640e-639.06HNH endonuclease n=1 Tax=Xenorhabdus innexi TaxID=... [more]
UPI001FAFFFFB1.140e-535.48HNH endonuclease n=1 Tax=Cuspidothrix issatschenko... [more]
A0A2D0KBT1_9GAMM2.150e-536.51HNH endonuclease n=1 Tax=Xenorhabdus ishibashii Ta... [more]
UPI0013DDF3AB4.350e-533.33HNH endonuclease n=1 Tax=Streptomyces sp. ADI95-16... [more]
A0A6M4PDL0_9ACTN4.600e-560.00HNH endonuclease n=1 Tax=Streptomyces sp. jing01 T... [more]
UPI001D080EF76.980e-536.67HNH endonuclease n=2 Tax=Clostridium scindens (str... [more]
UPI0019FEC1FB8.040e-535.00HNH endonuclease n=1 Tax=filamentous cyanobacteriu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7contigEcto-sp13_S_contig7:38081..38278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size198
Hectar predicted targeting categoryother localisation
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463959.7512252-CDS-Ecto-sp13_S_contig7:38080..382781681463959.7512252-CDS-Ecto-sp13_S_contig7:38080..38278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7 38081..38278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7.18032.1prot_Ecto-sp13_S_contig7.18032.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7 38081..38278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7.18032.1

>prot_Ecto-sp13_S_contig7.18032.1 ID=prot_Ecto-sp13_S_contig7.18032.1|Name=mRNA_Ecto-sp13_S_contig7.18032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
DCTKFREQVLEEQGHKCNYCACKVSFGEYSNADMDHIIPLNAGGEQALSN
VHVLCTPCHRRKTALE
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mRNA from alignment at Ecto-sp13_S_contig7:38081..38278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7.18032.1 ID=mRNA_Ecto-sp13_S_contig7.18032.1|Name=mRNA_Ecto-sp13_S_contig7.18032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:38081..38278+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATTGCACGAAGTTTCGGGAGCAAGTGTTGGAGGAGCAAGGTCACAAGTG CAACTATTGCGCGTGCAAGGTCTCTTTCGGAGAGTACAGTAACGCCGACA TGGATCACATCATTCCCCTGAACGCGGGCGGGGAGCAAGCTCTGTCCAAC GTTCATGTTTTGTGCACGCCGTGTCACCGAAGGAAGACTGCCTTGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7:38081..38278+

>mRNA_Ecto-sp13_S_contig7.18032.1 ID=mRNA_Ecto-sp13_S_contig7.18032.1|Name=mRNA_Ecto-sp13_S_contig7.18032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:38081..38278+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATTGCACGAAGTTTCGGGAGCAAGTGTTGGAGGAGCAAGGTCACAAGTG
CAACTATTGCGCGTGCAAGGTCTCTTTCGGAGAGTACAGTAACGCCGACA
TGGATCACATCATTCCCCTGAACGCGGGCGGGGAGCAAGCTCTGTCCAAC
GTTCATGTTTTGTGCACGCCGTGTCACCGAAGGAAGACTGCCTTGGAG
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