mRNA_Ecto-sp13_S_contig7.18031.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7.18031.1
Unique NamemRNA_Ecto-sp13_S_contig7.18031.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7.18031.1 vs. uniprot
Match: Q8QN98_ESV1K (EsV-1-191 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN98_ESV1K)

HSP 1 Score: 158 bits (400), Expect = 5.190e-42
Identity = 96/263 (36.50%), Postives = 136/263 (51.71%), Query Frame = 1 
Query:    7 CNTCSSEFSGQYHLR-VPLTIVCEQCVVSIDLMTKTEALSAGASQTDLYSIRKLYAPNPHYRNGPDMQLFVREEVGALVKIAADSRRRKQEEADRKRELADAKQRRVKKSRVESLAKRMQSLNG-----IAPTPGLVAGDFCTTESKTPKVGVRSVLVRRELWNRLPAVEIPKKVMLFEWAVKNKRLSSDAASIAASVQHEAHLFDRVATVEGNRILSYLDGVDRLVLLRTNLIFSEGLYDLPIPPMSDSWFYLCDEASRHLK 777
            C  C+  F G   +  + LT VCE C+VS +L+TKT A+S GA   DL  +     PNP+YRN     LF+ EEV  +  IA   R R++     K E+    +R     R   L KR+QS          PTPGLV+GDFCT+ +KTPK+ V  +  R  +W+ L    +  +V LF +   N+  +     I +SVQ+  H  DRV   EGNR+L +L  ++RL + R      + L+ LP+  MSD  + LC   S  L+
Sbjct:    4 CGKCAEPFVGHLSINGITLTRVCEGCLVSTELLTKTSAMSLGARVEDLDRLDHRREPNPYYRNAASTYLFLEEEVKYVAGIANADRERRECARKCKEEIQARAKRMKHDDRARCLEKRIQSATSKIKTVSPPTPGLVSGDFCTSTTKTPKISVAKLAKRVAIWSSLNNFSLSHRVNLFRFGCANELYTFSGKEIESSVQNVHHSLDRVVLREGNRVLEFLTPMERLHVSRAVPFTHQELHGLPVSAMSDDMYALCQYTSAKLE 266
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BLAST of mRNA_Ecto-sp13_S_contig7.18031.1 vs. uniprot
Match: D8LPL0_ECTSI (EsV-1-191 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL0_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 2.200e-39
Identity = 91/263 (34.60%), Postives = 135/263 (51.33%), Query Frame = 1 
Query:    7 CNTCSSEFSGQYHLR-VPLTIVCEQCVVSIDLMTKTEALSAGASQTDLYSIRKLYAPNPHYRNGPDMQLFVREEVGALVKIAADSRRRKQEEADRKRELADAKQRRVKKSRVESLAKRMQSLNGIA-----PTPGLVAGDFCTTESKTPKVGVRSVLVRRELWNRLPAVEIPKKVMLFEWAVKNKRLSSDAASIAASVQHEAHLFDRVATVEGNRILSYLDGVDRLVLLRTNLIFSEGLYDLPIPPMSDSWFYLCDEASRHLK 777
            C  C+  F     +  + LT VCE C+VS +L+TKT A+S GA   DL  +     PNP+YRN     LF+ EEV  +  IA  +R R++     K E+    +R     R + L KR+Q+          PTPGLV+GDFCT+ +KTPK+ V  +  R  +W  L  + +P +V LF +   N+  +     I ++V    +  D+V   EGNR+L +L  ++RL   R      + L+ LP+  MSD  + LC   S  L+
Sbjct:    4 CGKCAEPFVDHLSINGITLTRVCEGCLVSTELLTKTSAMSLGARVEDLDRLDHRREPNPYYRNAASTYLFLEEEVKYVAGIANAARERRECARKSKEEIQSRAKRMKHDDRSKCLEKRIQTATSRIKPVGPPTPGLVSGDFCTSATKTPKISVAKLAKRVAIWRSLSNLSLPPRVNLFRFGCANELYALSGEEIESAVASAHYSLDKVVLGEGNRVLQFLSPMERLHATRAVPSMHQELHGLPVSAMSDDMYALCQYTSVKLE 266
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7.18031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QN98_ESV1K5.190e-4236.50EsV-1-191 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPL0_ECTSI2.200e-3934.60EsV-1-191 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7contigEcto-sp13_S_contig7:31940..32716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size777
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-191
Ec32 orthologEc-06_005010.1
Cds size777
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463959.7203062-CDS-Ecto-sp13_S_contig7:31939..327161681463959.7203062-CDS-Ecto-sp13_S_contig7:31939..32716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7 31940..32716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7.18031.1prot_Ecto-sp13_S_contig7.18031.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7 31940..32716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7.18031.1

>prot_Ecto-sp13_S_contig7.18031.1 ID=prot_Ecto-sp13_S_contig7.18031.1|Name=mRNA_Ecto-sp13_S_contig7.18031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
MICNTCSSEFSGQYHLRVPLTIVCEQCVVSIDLMTKTEALSAGASQTDLY
SIRKLYAPNPHYRNGPDMQLFVREEVGALVKIAADSRRRKQEEADRKREL
ADAKQRRVKKSRVESLAKRMQSLNGIAPTPGLVAGDFCTTESKTPKVGVR
SVLVRRELWNRLPAVEIPKKVMLFEWAVKNKRLSSDAASIAASVQHEAHL
FDRVATVEGNRILSYLDGVDRLVLLRTNLIFSEGLYDLPIPPMSDSWFYL
CDEASRHLK
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mRNA from alignment at Ecto-sp13_S_contig7:31940..32716+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7.18031.1 ID=mRNA_Ecto-sp13_S_contig7.18031.1|Name=mRNA_Ecto-sp13_S_contig7.18031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:31940..32716+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCTGCAACACTTGCTCAAGCGAATTTTCCGGGCAGTATCACCTCCG
GGTGCCACTGACGATCGTATGCGAGCAATGCGTGGTGTCGATCGACCTCA
TGACGAAGACCGAGGCTCTCTCGGCAGGCGCAAGTCAGACTGACTTGTAC
AGCATACGTAAACTTTATGCGCCCAACCCCCACTACAGAAACGGCCCAGA
CATGCAACTGTTCGTTCGCGAGGAGGTGGGCGCGCTCGTAAAGATTGCAG
CCGACTCCAGGCGCCGAAAACAAGAGGAGGCCGACCGCAAGAGGGAACTA
GCGGATGCAAAACAACGCCGAGTGAAAAAATCACGTGTCGAAAGCCTCGC
AAAACGAATGCAGAGTCTCAACGGCATAGCGCCCACTCCTGGATTGGTTG
CAGGGGACTTTTGCACAACGGAGAGTAAGACCCCGAAGGTAGGAGTGAGA
AGCGTTCTGGTCAGAAGGGAGCTGTGGAATAGACTGCCTGCTGTTGAAAT
TCCGAAGAAAGTGATGCTCTTCGAGTGGGCAGTCAAGAACAAGAGGCTCT
CCTCAGATGCCGCAAGCATAGCGGCGAGTGTGCAGCACGAAGCGCACTTG
TTCGACAGGGTTGCTACGGTTGAGGGTAACAGGATTCTATCCTACCTAGA
CGGGGTAGATCGATTGGTGTTGCTGCGCACGAACCTCATCTTCAGCGAGG
GGTTGTACGACCTTCCCATCCCACCGATGTCTGATAGTTGGTTTTACCTT
TGTGATGAAGCATCTCGACACCTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7:31940..32716+

>mRNA_Ecto-sp13_S_contig7.18031.1 ID=mRNA_Ecto-sp13_S_contig7.18031.1|Name=mRNA_Ecto-sp13_S_contig7.18031.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:31940..32716+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCTGCAACACTTGCTCAAGCGAATTTTCCGGGCAGTATCACCTCCG
GGTGCCACTGACGATCGTATGCGAGCAATGCGTGGTGTCGATCGACCTCA
TGACGAAGACCGAGGCTCTCTCGGCAGGCGCAAGTCAGACTGACTTGTAC
AGCATACGTAAACTTTATGCGCCCAACCCCCACTACAGAAACGGCCCAGA
CATGCAACTGTTCGTTCGCGAGGAGGTGGGCGCGCTCGTAAAGATTGCAG
CCGACTCCAGGCGCCGAAAACAAGAGGAGGCCGACCGCAAGAGGGAACTA
GCGGATGCAAAACAACGCCGAGTGAAAAAATCACGTGTCGAAAGCCTCGC
AAAACGAATGCAGAGTCTCAACGGCATAGCGCCCACTCCTGGATTGGTTG
CAGGGGACTTTTGCACAACGGAGAGTAAGACCCCGAAGGTAGGAGTGAGA
AGCGTTCTGGTCAGAAGGGAGCTGTGGAATAGACTGCCTGCTGTTGAAAT
TCCGAAGAAAGTGATGCTCTTCGAGTGGGCAGTCAAGAACAAGAGGCTCT
CCTCAGATGCCGCAAGCATAGCGGCGAGTGTGCAGCACGAAGCGCACTTG
TTCGACAGGGTTGCTACGGTTGAGGGTAACAGGATTCTATCCTACCTAGA
CGGGGTAGATCGATTGGTGTTGCTGCGCACGAACCTCATCTTCAGCGAGG
GGTTGTACGACCTTCCCATCCCACCGATGTCTGATAGTTGGTTTTACCTT
TGTGATGAAGCATCTCGACACCTGAAG
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