mRNA_Ecto-sp13_S_contig7.18030.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7.18030.1
Unique NamemRNA_Ecto-sp13_S_contig7.18030.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7.18030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7contigEcto-sp13_S_contig7:26576..33648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1821
Hectar predicted targeting categoryother localisation
Exons2
Cds size1086
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463959.6485639-UTR-Ecto-sp13_S_contig7:26575..271811681463959.6485639-UTR-Ecto-sp13_S_contig7:26575..27181Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7 26576..27181 -
1681463959.6710296-UTR-Ecto-sp13_S_contig7:28267..282921681463959.6710296-UTR-Ecto-sp13_S_contig7:28267..28292Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7 28268..28292 -
1681463959.6846108-UTR-Ecto-sp13_S_contig7:33544..336481681463959.6846108-UTR-Ecto-sp13_S_contig7:33544..33648Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7 33545..33648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463959.6602132-CDS-Ecto-sp13_S_contig7:27181..282671681463959.6602132-CDS-Ecto-sp13_S_contig7:27181..28267Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7 27182..28267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7.18030.1prot_Ecto-sp13_S_contig7.18030.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7 27182..28267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7.18030.1

>prot_Ecto-sp13_S_contig7.18030.1 ID=prot_Ecto-sp13_S_contig7.18030.1|Name=mRNA_Ecto-sp13_S_contig7.18030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=362bp
MARVEHGRDVRQGDVLQELDNHAPIGLAPRGRNLERARSWPGTANITDVE
SGFNVRSGDVVQGPGNPAPTDPCCRFPSVFLWHTLIISGLEAYFSIINAI
NHGHVSSFASWVFNASAWMESIGFLFALVIMALTSCNCNVIDSARLGSGG
SPLLMVWEANFALDGSRTPLMSTAVYVGFALQAAAIWVYSMVLLSDRSPV
DAIALGISVLAACGVVLIGFKKLIHLVHTRLAQAERRLVVTGRISYRARI
VTAFRSFVQNGPLVNALILLVFCLQYVVDWYQHIFVAPLVVEVIELVLIF
AGWSSSTSDSIVLAVLDLILVVSALPQVCWFLWKPLNVVLGIEVFFPTSD
ELYSVVQRVLP*
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mRNA from alignment at Ecto-sp13_S_contig7:26576..33648-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7.18030.1 ID=mRNA_Ecto-sp13_S_contig7.18030.1|Name=mRNA_Ecto-sp13_S_contig7.18030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7073bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:26576..33648- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGTGCTACCGACCCACTGGGAGAGCGCGCGGAGAGGCTGAACCCCTGGA
GACTGGTTAGCGCTGTGAGGATGTGCACAGGATCGGGCGAAGCGTGAGAA
TAAGGTGAGATATCTCACAGTCCGCAGGCTTGTGCGCGCCTTCGGACGTG
AAGCTACCTCACACATGCGTGTATTGAGTTGAAGATCCCTGAAGCCACTG
CCATCGCACAGAATATATAAGAGTACCCCGTCGTTCCCCTGGACAAGGGC
TTTCGCGTGATACCAGTATCAGCGCCGTGCGTTCCGAGATGTTTGAAAAC
CAGACTGCTGTATTGCGTGAAAATTTCCTTGAGATTTCTGCCTGTTGACA
TTCCCCCGCCCTGAAAAAAAAAAGTCATCCCCGGCCGTGCCTTCCACACG
GCCCTCTACAACAACGGCCACACAGATCGAACACACACTCGCGCGCTGCT
GAGTTCCCACACCGACACAAACTAGGGCTGTTTGAACTCCGAAAGCGCTC
GTCCTCCTTCCTCATCAACTGCATCTCTCGCCTAACGGAAAGCTGCTCCT
TGATGTACTCTGTGGTAGTTTCCTTCCATGTTGCCCCGGGTGTCGACATG
ACTATCCTGGTCACCGCTTTGGCGGCTTGTTGGTGGGGTAGCTGGGCTTT
GAGTATGACACATGAAGCCGTGTACAGCTCAACGTCTACAATATCACCCC
TAAAATAACTACAGGCGTCGTCGGTTAACCGGTGCCTGTCTTCGGGGTCT
AGCCCCCATCTCGCAAAAGACTCTTGCATATCGCGCCTCAGCAGCCTCTG
TCGCTTCGACGGAGCGTGAAAATGGGGTGCAATGATACGTGCCACCCTTT
TAGGGCAGATTACAAACATGTAGTCCCATATCCAACAGTTTTCAGAGTCG
CGCAGTTTGGTGAGCACTCGTCCGAAGGGCAGCTTCAGGTGTCGAGATGC
TTCATCACAAAGGTAAAACCAACTATCAGACATCGGTGGGATGGGAAGGT
CGTACAACCCCTCGCTGAAGATGAGGTTCGTGCGCAGCAACACCAATCGA
TCTACCCCGTCTAGGTAGGATAGAATCCTGTTACCCTCAACCGTAGCAAC
CCTGTCGAACAAGTGCGCTTCGTGCTGCACACTCGCCGCTATGCTTGCGG
CATCTGAGGAGAGCCTCTTGTTCTTGACTGCCCACTCGAAGAGCATCACT
TTCTTCGGAATTTCAACAGCAGGCAGTCTATTCCACAGCTCCCTTCTGAC
CAGAACGCTTCTCACTCCTACCTTCGGGGTCTTACTCTCCGTTGTGCAAA
AGTCCCCTGCAACCAATCCAGGAGTGGGCGCTATGCCGTTGAGACTCTGC
ATTCGTTTTGCGAGGCTTTCGACACGTGATTTTTTCACTCGGCGTTGTTT
TGCATCCGCTAGTTCCCTCTTGCGGTCGGCCTCCTCTTGTTTTCGGCGCC
TGGAGTCGGCTGCAATCTTTACGAGCGCGCCCACCTCCTCGCGAACGAAC
AGTTGCATGTCTGGGCCGTTTCTGTAGTGGGGGTTGGGCGCATAAAGTTT
ACGTATGCTGTACAAGTCAGTCTGACTTGCGCCTGCCGAGAGAGCCTCGG
TCTTCGTCATGAGGTCGATCGACACCACGCATTGCTCGCATACGATCGTC
AGTGGCACCCGGAGGTGATACTGCCCGGAAAATTCGCTTGAGCAAGTGTT
GCAGATCATTGTTGCTGGCTTTGGGACTGCGGTGGTGGCTTTCTTGGATG
GTCTCAATCTGAACCGTCGAGAATAGGCGGATTTTAAAAAGCTGTGTAGC
ACACATATAACGTACCAAACATGCACCGGTATGGCAACAACCCGCGAGTT
CTTACCCACACCGTAGGCGATGCCATCCGAGCATGTACAATCCGGAAACG
GACCGTCGAGCTGTGTTTTCAGCTGTGGTGTTGCTCCCTGGTGTTTTCCG
CGGTCTTGATACTGTCGTTGTTGCTGTACTTTGTTCTGATAATGGTATCG
CTGGCAGTGGCACCGGGCGTCGAGCTCGTTCAGTCCACGCCCTAAAATAT
ATCCGAAGTATCCAGGGCTCAACATGACAGAATGCGACTTCCTTGACGTG
GCAAACGTGGGAAAAATTCAGGGCGAAGGATACTTGGTGTTGCTGTATTC
TGGGCAATCCATTGATTGCGAAGAGTTGCGCGTCCGCAGTGTGTCTTCCA
ATATATGTGAAGCGTCGTTCGCGGCATGTGCCCTCGAGAACGACCCGCTC
AATTTTATCGAAGCATGCATTTCAAAATGCTTTTCAAAGCTTGTTTCCGA
CAAGATGTCGGCTTTGCTGGAACGGCACCTCGGCACGCACTGCTGGTTCA
CGTGCGATGTCTCGAAAAAAACGTTCTTCATGACCCTCGTGACCACCAGA
AATGGCCACTTGTTTGAAATATTTACCGACAGAGAAGAGACTAGAGTCGA
CGTATTGAACCACGGCAGGGTTCTCTCTGGATTAGTGACACACCACGGCG
ATTCAGCCTCGCTCTTTCGAACGGCTTGTTCGGCCGTTACCGACTTGGTG
GGATACGATAGATGCATGGTGTACCAGTTCCAGCAAGACTTATCTGGAAA
GGTTGTTTTCGAATGGATACGGCCCGCGATGGTGGGCACCCTAGAGCCCT
GGCTAGATACCTTTTTTCCTGCTTCCGATATTCCGCTACCAGCGAGGCAG
ATGTTTCTGGTCGTCCCTGTAAGAGTGATATTTGACACCCAAAAGCCACC
CGTGGACGTCGTCGGCAATCCACAAGACGGTGCGGCGGACCTATCCAAGG
GCACATTACGGGCCATCCACCCCGTTCATATTAGCTACCTGAAAAACATG
GGGGTGCGGTCGTCCATGTCCATCGCCATCATCGTACACAGCGAACTATG
GGGCTTGTTGTGTTTCCATTCTTATGGGGAAGCCAAGAGTCCGCGGGGGT
GGGAGACTAGCTTCTTCAACAGCTTGAGTGTCCCCGTGTCAGCAAATATC
TCTAAAATTCACCGCGAGGCAATCGAGAAACGACAGAGGTCCCTGTCACG
TGTCGTCGACCAGGGGTTCTCTTGTGGAGGAGTGCTGGAGTTTTTTCAGA
GATGCGCGCTTGACCTCCTCAAGGTAGTGGGGCCGATTGTACATGCCTCC
TCTTGAAAAACAAGGTACACTCGTATGGCGACTCCAGCCTCGCACTGACC
GAGGATGAGATAAAGCGCATCCTGAGGAACTCCGACGGGCACGAGTGCGT
CGTCGGAAAACTCAGTGAGCCGCGGCGCGGGGTTATGTGCGTCCAAAACA
CAGATCTCATCGTTGCTTTCACGCGTAAGAGTGTCGTGGGAGATAAGGTG
TGGGGGGGAGATCCATTCCAGCAGAAACTTATGCGACCCGATGGTGTACC
GGGTCCCCGCGGGTCCTTCGCGCGGTACGTACAATCTGATGCGGACAGCC
TAAACAAGTGGGACACGCAGGATCAGCACCTAGCCACCCACCTGTCCGAG
CGAATCAAACTACTCTCCACCACTCTAGACTCTTTTTCGAACAAGCTGAA
GCTCATCGACCAACCTGGTGCCGAAGGACAACTGGCCTACAGCACGGTCC
CCTCCGGAGCACCGAAGATCGACACCGCGTTTATCTCGCATTTTTCACAC
GAAATGAAAACCCCTTTGCACGGTGTCTCGAGCGCCCTCACATTGCTACT
CGAAGACTCCGAGATGACACCGAGAGAGACGCGGTCAAAATTGCTGTACG
GTTTGGAGTGTGTTAAGAGTGTCCAGAAGGTGGCTGGCGACGTGCTGAGC
ATCGTCGGCGGCCACGGGGCGCCGGTCGCGACGAGACACGTGGAAAGGAT
TTGTTTGCAAGGGTTCGTGGACACACTCAGAGAAAGATTCGGCCACAACA
GAAGCTTCACGGCGTCAAACCACGTCCCGGAAGAGCATGGCGAAATCCTG
ATCGATCGGGACGGGCTGCACGATGCCCTTTGCGAGATGATCCATAACTC
CTTGTCGTCACCTACCGAGCAAGTACACTTGTCGGTTAAGTGCCATGCAA
CACACCGGGAGGCCGTCTTGGAGTGGAAGGACCAGACGACGGGATACGAT
CACCGCAACATCCGCAACTCAGAAGAGGGCGGTGTCGCCGAGTCAGATGC
GTGGTACACGTTCAGCGTGCAAGATAAAGGTTGTGGCGTCTACGGCGATA
TGATAGACAACGTAATATCTTACCGTGACGACACCCGGTCATCCACAACA
CTCGCTCACTCTCACCAAGGTGCCGGCGTCGGCGTTTACAAGTGTTTATC
TAATGTCGTGTTTAGCATGAACGGCAGCGTTGGCATTGCCTCCACGGTGT
CTGAGGGCACCGTAGTGTCCCTCATGATTCCTGCTTCTAGGGTTGAGCGG
GTCGGCGGAGGCAAGCCAATCGAACCCGTTGACGTTGGCACATTTTTGGT
GGTGGACGATAATTCCATAAACCGCAAGCTGGCATCGCGCATGGTCACTG
TAGCGTTCACGAAGAGGGTCGGTGGCTCGCTACACAAACCTCTGGAGGGA
CGACTCGGTCCCCTGACAACCGACTTGTGCGAGGATTTGTGCGTGGCCTG
GGTGCACCTCTCTTCTTGACTCTCATTTTTTGTACATGTACTGTATTCAA
ACATTAATCCAGCGAAAACTCCCGGGACGGACGTCTCCCTGGAGTGCGCG
CCAGTGTGCCACATCGAGCGCGGAGAAAATTAACAAAAAAATGTAAACCC
GTGAGCAAGTTGCCGCTAGCAGCAGTGTTGGAGAGGGGTATTGGATAATC
GATCGCCGCTTTTTTACACCCCCAGTACGCTTAGCCGCCCCAGCTGCTAG
TCAATTTCCAGTTAAACAGCTTTTAGGAAAGGTTTTGACGCGCGCGAAGC
GCGCGGTGAAAAACAAAGCCGGCGCGAAAGCGGAAAGAGATTGTTTTAGA
TGGGTGATTTTCTTCTCCGCGCACCTTAATTAAATACGCATTAACACGTA
ACACCCCCTGCCGATAGAGCGACCCCTGAGACTTGCCCTGAATAAATAAT
TAAATACGTGTTAATGTGATTCCGTGCGTGTGCGTGTGTGCGTGTGTGCC
CTCATTTTGCACACACACCTTTGCACCGGCCAAGAAGCCATTTGGGGATC
GACTAAGAAACGTTTCTTTCTTGTATAGAATAATAAGGACGCTTCGATAG
GAAAATTGTGCATACGCAAACGTTGACGACCCTCTGCTCTGGTCGCAAGT
CTCCTTTCTGTGCGTGGCGAAGCAAAATTAGGGAATATGTCATTTCAACA
GGACCTGTGCTCGTACCCATGTGTACATCCACCTTCGCTACATTCGTTCG
CCACAGAGGGTTGGCTAGGTACGACTACAACATGGCCCGCGTCGAACATG
GTCGCGACGTACGCCAGGGTGATGTACTTCAAGAGCTCGACAATCATGCG
CCGATCGGTCTGGCTCCACGGGGTCGAAACCTCGAGCGCGCCAGAAGTTG
GCCAGGTACGGCTAACATCACCGACGTCGAATCTGGCTTCAATGTACGCA
GCGGTGATGTCGTTCAAGGACCCGGCAATCCTGCGCCGACCGACCCATGT
TGCAGGTTTCCGTCAGTATTTTTGTGGCATACGCTCATCATCAGCGGCCT
CGAGGCGTACTTCAGTATTATTAACGCTATAAACCATGGGCACGTCAGCT
CGTTTGCGAGTTGGGTATTCAATGCATCCGCGTGGATGGAGAGTATCGGC
TTCCTGTTTGCGTTGGTCATCATGGCTTTGACATCGTGCAACTGCAATGT
TATCGATTCTGCAAGACTGGGCAGCGGGGGTTCGCCACTTTTGATGGTCT
GGGAAGCAAATTTTGCCTTGGACGGTAGTAGGACGCCCCTCATGAGCACT
GCTGTCTACGTGGGGTTCGCATTGCAAGCGGCTGCGATCTGGGTGTACTC
GATGGTGCTTTTGAGTGATCGTAGTCCTGTGGATGCCATAGCGCTCGGCA
TTTCTGTTCTTGCTGCGTGCGGAGTTGTGCTCATTGGATTCAAGAAGCTT
ATCCACCTAGTCCATACCAGGCTTGCCCAAGCCGAGAGGAGATTGGTAGT
CACGGGACGGATATCGTATCGTGCGAGAATCGTCACTGCTTTTCGCTCTT
TTGTTCAAAATGGCCCTCTTGTGAATGCGCTGATACTGTTGGTTTTCTGT
CTCCAATATGTTGTTGATTGGTACCAACATATCTTCGTAGCCCCACTAGT
AGTCGAGGTAATCGAGCTGGTTCTGATTTTCGCTGGATGGTCGTCTAGTA
CTTCCGATTCAATAGTTCTCGCAGTCTTGGACCTAATTCTCGTTGTGTCA
GCCCTCCCGCAAGTCTGTTGGTTTTTGTGGAAACCCCTCAATGTGGTTCT
AGGAATTGAAGTTTTTTTCCCAACCAGTGACGAGTTATACTCGGTGGTCC
AGAGAGTCCTACCCTAACGTGCACGTAGAATAAACCGCCTGGTGTAATAG
ATACCCTGGGGTAGGATGCATTTCATATTTTGTGGCTTTCCTTCCGCGCT
CTTCGCACTAGTCTGGTCCATCTCTTTTAATATTTCGTTTGCCTTCGTGG
TCACCTTTTTCGGGGAGTTAATTGAGAGCCCGAGAAGTCTACGTCGCTTG
GAAACAGTAGTGTCGACATTATCACTTGGTCCGGATAGTAATTGGGTGGC
AGCACGTTGGGAATTGAACGTGTTCGCGCACAGATAAAATCATAAAATGA
TGGATATGATTTCGAATGACTGGATCGAATTGGGCACTATCTTGGTACCA
TTTATTTATATTTCGCTAGATAAGCGAGTGTACCGTAGACGGCAGGATTG
GGGCTGATACCTCCGAATAATGGACGTGAATCATTTCGAATAAAAAATAT
AAGTAATAATGTAACGAGAGGGGCACTGTAGTTTTGTTTGGCCATTTTTC
ACCGCGTCGTAGACGCAGCAGGAATGTATAATGAAACGTGCCTAGACCTG
GAGCCCGTTCTGCTTGCTGTCGAGCCGCATTCGGCAGCCTTCCGAACTGC
CAGATATCGTGGACATGAGAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7:26576..33648-

>mRNA_Ecto-sp13_S_contig7.18030.1 ID=mRNA_Ecto-sp13_S_contig7.18030.1|Name=mRNA_Ecto-sp13_S_contig7.18030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1086bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:26576..33648- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCGCGTCGAACATGGTCGCGACGTACGCCAGGGTGATGTACTTCA
AGAGCTCGACAATCATGCGCCGATCGGTCTGGCTCCACGGGGTCGAAACC
TCGAGCGCGCCAGAAGTTGGCCAGGTACGGCTAACATCACCGACGTCGAA
TCTGGCTTCAATGTACGCAGCGGTGATGTCGTTCAAGGACCCGGCAATCC
TGCGCCGACCGACCCATGTTGCAGGTTTCCGTCAGTATTTTTGTGGCATA
CGCTCATCATCAGCGGCCTCGAGGCGTACTTCAGTATTATTAACGCTATA
AACCATGGGCACGTCAGCTCGTTTGCGAGTTGGGTATTCAATGCATCCGC
GTGGATGGAGAGTATCGGCTTCCTGTTTGCGTTGGTCATCATGGCTTTGA
CATCGTGCAACTGCAATGTTATCGATTCTGCAAGACTGGGCAGCGGGGGT
TCGCCACTTTTGATGGTCTGGGAAGCAAATTTTGCCTTGGACGGTAGTAG
GACGCCCCTCATGAGCACTGCTGTCTACGTGGGGTTCGCATTGCAAGCGG
CTGCGATCTGGGTGTACTCGATGGTGCTTTTGAGTGATCGTAGTCCTGTG
GATGCCATAGCGCTCGGCATTTCTGTTCTTGCTGCGTGCGGAGTTGTGCT
CATTGGATTCAAGAAGCTTATCCACCTAGTCCATACCAGGCTTGCCCAAG
CCGAGAGGAGATTGGTAGTCACGGGACGGATATCGTATCGTGCGAGAATC
GTCACTGCTTTTCGCTCTTTTGTTCAAAATGGCCCTCTTGTGAATGCGCT
GATACTGTTGGTTTTCTGTCTCCAATATGTTGTTGATTGGTACCAACATA
TCTTCGTAGCCCCACTAGTAGTCGAGGTAATCGAGCTGGTTCTGATTTTC
GCTGGATGGTCGTCTAGTACTTCCGATTCAATAGTTCTCGCAGTCTTGGA
CCTAATTCTCGTTGTGTCAGCCCTCCCGCAAGTCTGTTGGTTTTTGTGGA
AACCCCTCAATGTGGTTCTAGGAATTGAAGTTTTTTTCCCAACCAGTGAC
GAGTTATACTCGGTGGTCCAGAGAGTCCTACCCTAA
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