mRNA_Ecto-sp13_S_contig7.18027.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7.18027.1
Unique NamemRNA_Ecto-sp13_S_contig7.18027.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7.18027.1 vs. uniprot
Match: A0A835Z303_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z303_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.250e-20
Identity = 62/170 (36.47%), Postives = 94/170 (55.29%), Query Frame = 1
Query:  586 TIEGQIRRKKQENRVSNKLKAWGFDFDCETTINSRRQDCLTDTERYYSRLDFTIINCTNAVLILEVDEEQHTWYNLSCEFSRMVDVTASLATSGYDLPIYWLRYSPNGPYHVDSGNQKMGRVAREAKLKKHLEFLCSPDFDPKNKMNVHYMFYDLKSREDGPVILNDADF 1095
            T EG  R+ KQ+ RV+N LK  G+  D E TI  +   C+ D +R+ +RLD  I+  T+ +LI+EVDEE H  Y +SCE +RM+ V  ++ + GY +P+ ++RY+PNG    D    KM R  RE  L + L  +       +  +N+ Y+ Y   +    P +  D DF
Sbjct:  343 TKEGAKRQLKQQMRVANLLKEAGYTVDEECTI--QYGGCVPDPDRHRARLDIYIVTITSCILIVEVDEEAHASYLVSCELTRMLQVHEAILSRGYTVPVVFVRYNPNGCITKDGVCIKMTREEREVVLLEFLGRVRDGQQVFQEPLNLVYLCY--PTTYGLPTVCEDTDF 508          
BLAST of mRNA_Ecto-sp13_S_contig7.18027.1 vs. uniprot
Match: A0A835YQ85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ85_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.010e-19
Identity = 55/133 (41.35%), Postives = 80/133 (60.15%), Query Frame = 1
Query:  592 EGQIRRKKQENRVSNKLKAWGFDFDCETTINSRRQDCLTDTERYYSRLDFTIINCTNAVLILEVDEEQHTWYNLSCEFSRMVDVTASLATSGYDLPIYWLRYSPNGPYHVDSGNQKMGRVAREAKLKKHLEFL 990
            EG  R+ KQ+ RV   LK  G+  D E TI  +   C+ D +R+++RLD  ++  T+ +LI+EVDEE H  Y +SCE +RM+ +  ++ T GY +P+ ++RYSPNG    D    +M R  RE  L   LEFL
Sbjct:  245 EGAKRQLKQQMRVVKVLKEAGYTVDEECTI--QYTGCVPDPDRHHARLDVYVVTITSCILIVEVDEEAHASYLVSCEITRMLQMHEAILTRGYTVPVVFVRYSPNGAITRDGVYFEMTRKEREVAL---LEFL 372          
BLAST of mRNA_Ecto-sp13_S_contig7.18027.1 vs. uniprot
Match: A0A836CIF6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.320e-16
Identity = 47/151 (31.13%), Postives = 82/151 (54.30%), Query Frame = 1
Query:  592 EGQIRRKKQENRVSNKLKAWGFDFDCETTINSRRQDCLTDTERYYSRLDFTIINCTNAVLILEVDEEQHTWYNLSCEFSRMVDVTASLATSGYDLPIYWLRYSPNGPYHVDSGNQKMGRVAREAKLKKHLEFLCSPDFDPKNKMNVHYMFY 1044
            E Q+R+KK E  V   LK   F+ D E  I  R  + + + ++ Y+R+D  + N T  V+ILE+DE+ H +Y + CE +RM+ +  +L   G   P+ ++R++P+G    D     + +  R   LK++L  +   D    + +N+ Y+FY
Sbjct:  103 ENQMRQKKMEFAVMKYLKENSFNLDDEVHI--RYNESVVNADKAYARIDLFVCNITAYVVILEIDEKAHRFYEVRCEQTRMLQIDDALRKGGIAAPVVFIRFNPDGLVTRDGQKFTISQEERLEYLKQYLTSIVDGDVIFSDPINLVYLFY 251          
BLAST of mRNA_Ecto-sp13_S_contig7.18027.1 vs. uniprot
Match: A0A835Z3M2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3M2_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.310e-15
Identity = 50/187 (26.74%), Postives = 98/187 (52.41%), Query Frame = 1
Query:  586 TIEGQIRRKKQENRVSNKLK-AWGFDFDCETTINSRRQDCLTDTERYYSRLDFTIINCTNAVLILEVDEEQHTWYNLSCEFSRMVDVTASLATSGYDL----------------PIYWLRYSPNGPYHVDSGNQKMGRVAREAKLKKHLEFLCSPDFDPKNKMNVHYMFYDLKSREDGPVILNDADF 1095
            T+EGQ ++ ++++RV   L+ A+  D +C          C+ D +++ +R+D+ ++  TNA++I+E DE+ H  Y L+CE SRM  +  ++  + + +                P+ ++R++P+ P+ VD   +   R  REA L + L+ +     +  + +N+ Y+ Y +   E  PV+  D DF
Sbjct:  227 TVEGQQKKIRKQDRVRQVLESAYTVDSECHVRYQG---GCVPDPDKFCARIDYHVLGITNAIVIVECDEQGHKDYTLTCELSRMEQIHEAIIKANFSMVVAKAGEAYALTASMKPVVFVRFNPD-PWKVDGEKELSRRCDREAVLLEVLQDISDGTLELPHPLNLVYIGYSMLDGE--PVVCGDPDF 407          
BLAST of mRNA_Ecto-sp13_S_contig7.18027.1 vs. uniprot
Match: A0A836CH89_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH89_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.030e-12
Identity = 50/187 (26.74%), Postives = 94/187 (50.27%), Query Frame = 1
Query:  586 TIEGQIRRKKQENRVSNKL-KAWGFDFDCETTINSRRQDCLTDTERYYSRLDFTIINCTNAVLILEVDEEQHTWYNLSCEFSRMVDVTASLATSGYDL----------------PIYWLRYSPNGPYHVDSGNQKMGRVAREAKLKKHLEFLCSPDFDPKNKMNVHYMFYDLKSREDGPVILNDADF 1095
            T EGQ ++ ++++RV   + K +  D +C          C+ D +++ + +D+ ++  TNA++I+E DEE H  Y L+CE SRM  V  ++  + + +                P+ ++R++P+ P  VD   +   R  REA L + L+ +     +  + +N+ Y+ YD+   E  PV+    DF
Sbjct:  338 TKEGQQKKIRKQDRVRQIMEKIYAVDSECHVRYQG---GCVPDPDKFCACVDYHVLGITNAIIIVECDEEGHKDYVLACELSRMEQVHEAIVKANFSMMVAREGEEYALTTLMKPVVFVRFNPD-PRKVDGKKEITRRCDREAILLQVLQDISDGIVELSHPLNIVYIGYDMLEGE--PVVCGGPDF 518          
BLAST of mRNA_Ecto-sp13_S_contig7.18027.1 vs. uniprot
Match: A0A835YKM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKM9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.640e-10
Identity = 49/187 (26.20%), Postives = 86/187 (45.99%), Query Frame = 1
Query:  586 TIEGQIRRKKQENRVSNKLKA-WGFDFDCETTINSRRQDCLTDTERYYSRLDFTIINCTNAVLILEVDEEQHTWYNLSCEFSRMVDVTASLATSGYD----------------LPIYWLRYSPNGPYHVDSGNQKMGRVAREAKLKKHLEFLCSPDFDPKNKMNVHYMFYDLKSREDGPVILNDADF 1095
            T EG   + ++++R+   L+  +  D +C          C+ D +++ SRLDF ++  TNA++I+E DE +H  Y L CE SRM      +    +                  P+ ++RY+P+    VD   +K  R ++EA +   L  + S      + +N+ Y+ Y     +  PV+  D DF
Sbjct:   10 TKEGMESKIRKQDRLRKVLEGTYAVDSECHIRYKG---GCVPDPDKFCSRLDFHVVGITNAIVIVECDENEHNDYVLRCELSRMEQAHEGVIKGQFAEMKAVKGEATAMATPLRPVVFVRYNPDCRM-VDGVGEKRSRASKEADMMSVLSDIESGVLALPHPLNLVYVNYSTYHHK--PVVSYDPDF 190          
BLAST of mRNA_Ecto-sp13_S_contig7.18027.1 vs. uniprot
Match: A0A6I9YXP4_9SAUR (Krueppel-like factor 1 n=2 Tax=Thamnophis TaxID=34999 RepID=A0A6I9YXP4_9SAUR)

HSP 1 Score: 55.5 bits (132), Expect = 7.310e-5
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1
Query:    4 KSERAHSPAAHKKSVSKPKIVCHHERCGKAFARNSDLKKHMRTHTGEKPYH 156
            KS + H    HK+  S    VC H  CGK + ++S LK H+RTHTGEKPYH
Sbjct:  281 KSRKGHKQWGHKRPASH---VCSHPSCGKTYTKSSHLKAHLRTHTGEKPYH 328          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7.18027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835Z303_9STRA2.250e-2036.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQ85_9STRA1.010e-1941.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIF6_9STRA5.320e-1631.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3M2_9STRA4.310e-1526.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CH89_9STRA3.030e-1226.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKM9_9STRA3.640e-1026.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6I9YXP4_9SAUR7.310e-550.98Krueppel-like factor 1 n=2 Tax=Thamnophis TaxID=34... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7contigEcto-sp13_S_contig7:21668..22762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1095
Hectar predicted targeting categoryother localisation
Exons1
Cds size1095
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463959.4191425-CDS-Ecto-sp13_S_contig7:21667..227621681463959.4191425-CDS-Ecto-sp13_S_contig7:21667..22762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7 21668..22762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7.18027.1prot_Ecto-sp13_S_contig7.18027.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7 21668..22762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7.18027.1

>prot_Ecto-sp13_S_contig7.18027.1 ID=prot_Ecto-sp13_S_contig7.18027.1|Name=mRNA_Ecto-sp13_S_contig7.18027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=365bp
MKSERAHSPAAHKKSVSKPKIVCHHERCGKAFARNSDLKKHMRTHTGEKP
YHCTHPGCGLAFSTSSSLTRHILTHSGERPFPCLHPKCGLAFARSSDFTR
HMLTHSGERPFPCLHPGCGLAFARSDHLTRHMLTHSGERPFPCLHPGCGL
AFSQSDHLTRHMLTHSGERPFPCLHPGCGLAFSQIGNLTTHMQTHTIEGQ
IRRKKQENRVSNKLKAWGFDFDCETTINSRRQDCLTDTERYYSRLDFTII
NCTNAVLILEVDEEQHTWYNLSCEFSRMVDVTASLATSGYDLPIYWLRYS
PNGPYHVDSGNQKMGRVAREAKLKKHLEFLCSPDFDPKNKMNVHYMFYDL
KSREDGPVILNDADF
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mRNA from alignment at Ecto-sp13_S_contig7:21668..22762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7.18027.1 ID=mRNA_Ecto-sp13_S_contig7.18027.1|Name=mRNA_Ecto-sp13_S_contig7.18027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:21668..22762+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTCCGAGCGTGCACACAGCCCTGCCGCACACAAGAAGTCTGTTTC TAAACCCAAGATCGTTTGCCATCATGAACGTTGTGGAAAGGCATTCGCGC GAAATAGTGATTTGAAAAAGCATATGCGGACGCATACCGGCGAAAAGCCG TACCACTGCACGCACCCGGGCTGTGGGTTGGCATTCTCGACAAGTAGTAG TTTGACGAGGCATATACTCACCCACAGCGGAGAGCGCCCCTTCCCCTGCC TGCACCCGAAATGTGGGTTGGCATTCGCTCGAAGTAGTGATTTCACGAGG CATATGCTCACCCACAGCGGAGAGCGCCCGTTCCCGTGTCTACACCCGGG CTGTGGATTGGCTTTTGCGCGAAGTGACCACTTGACGAGGCACATGCTCA CCCACAGCGGAGAGCGCCCGTTCCCGTGTCTACACCCGGGCTGTGGGTTG GCATTCTCGCAAAGTGACCATTTGACGAGGCACATGCTCACCCACAGCGG AGAGCGCCCGTTCCCGTGTCTACACCCGGGCTGTGGATTGGCATTCTCGC AAATTGGTAATTTGACGACGCATATGCAGACCCATACAATCGAGGGGCAA ATCCGTCGGAAGAAGCAGGAGAATCGGGTGTCGAACAAGCTCAAGGCATG GGGCTTTGATTTTGATTGCGAAACTACTATAAACTCGAGGAGACAGGACT GTCTGACGGACACTGAGCGGTACTACTCACGGCTTGATTTCACTATCATC AACTGCACCAATGCGGTTCTCATTTTGGAAGTAGACGAGGAGCAGCACAC TTGGTACAATCTGAGCTGCGAGTTCAGTCGAATGGTAGACGTCACCGCGT CGTTGGCCACCTCGGGGTACGATCTGCCAATCTACTGGCTCCGTTACAGC CCGAATGGGCCGTATCACGTAGACTCGGGGAATCAGAAGATGGGTAGGGT CGCGCGCGAGGCGAAGCTGAAGAAGCACTTGGAGTTTCTTTGTTCTCCGG ACTTCGATCCCAAAAACAAAATGAATGTCCATTACATGTTTTATGACCTT AAGTCAAGGGAAGATGGGCCTGTTATCCTCAATGACGCGGACTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7:21668..22762+

>mRNA_Ecto-sp13_S_contig7.18027.1 ID=mRNA_Ecto-sp13_S_contig7.18027.1|Name=mRNA_Ecto-sp13_S_contig7.18027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:21668..22762+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTCCGAGCGTGCACACAGCCCTGCCGCACACAAGAAGTCTGTTTC
TAAACCCAAGATCGTTTGCCATCATGAACGTTGTGGAAAGGCATTCGCGC
GAAATAGTGATTTGAAAAAGCATATGCGGACGCATACCGGCGAAAAGCCG
TACCACTGCACGCACCCGGGCTGTGGGTTGGCATTCTCGACAAGTAGTAG
TTTGACGAGGCATATACTCACCCACAGCGGAGAGCGCCCCTTCCCCTGCC
TGCACCCGAAATGTGGGTTGGCATTCGCTCGAAGTAGTGATTTCACGAGG
CATATGCTCACCCACAGCGGAGAGCGCCCGTTCCCGTGTCTACACCCGGG
CTGTGGATTGGCTTTTGCGCGAAGTGACCACTTGACGAGGCACATGCTCA
CCCACAGCGGAGAGCGCCCGTTCCCGTGTCTACACCCGGGCTGTGGGTTG
GCATTCTCGCAAAGTGACCATTTGACGAGGCACATGCTCACCCACAGCGG
AGAGCGCCCGTTCCCGTGTCTACACCCGGGCTGTGGATTGGCATTCTCGC
AAATTGGTAATTTGACGACGCATATGCAGACCCATACAATCGAGGGGCAA
ATCCGTCGGAAGAAGCAGGAGAATCGGGTGTCGAACAAGCTCAAGGCATG
GGGCTTTGATTTTGATTGCGAAACTACTATAAACTCGAGGAGACAGGACT
GTCTGACGGACACTGAGCGGTACTACTCACGGCTTGATTTCACTATCATC
AACTGCACCAATGCGGTTCTCATTTTGGAAGTAGACGAGGAGCAGCACAC
TTGGTACAATCTGAGCTGCGAGTTCAGTCGAATGGTAGACGTCACCGCGT
CGTTGGCCACCTCGGGGTACGATCTGCCAATCTACTGGCTCCGTTACAGC
CCGAATGGGCCGTATCACGTAGACTCGGGGAATCAGAAGATGGGTAGGGT
CGCGCGCGAGGCGAAGCTGAAGAAGCACTTGGAGTTTCTTTGTTCTCCGG
ACTTCGATCCCAAAAACAAAATGAATGTCCATTACATGTTTTATGACCTT
AAGTCAAGGGAAGATGGGCCTGTTATCCTCAATGACGCGGACTTT
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