mRNA_Ecto-sp13_S_contig7.18026.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7.18026.1 vs. uniprot
Match: D7FHJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ0_ECTSI) HSP 1 Score: 863 bits (2230), Expect = 8.490e-301 Identity = 472/841 (56.12%), Postives = 581/841 (69.08%), Query Frame = 1
Query: 1 MKKREKQALEQVEAFKETVD-KTTRKIDKLTYLGLVRTLVGGLTGEGEGQLEITPGKVFFKRDKLASLQKFYDLNAKYDPADVGVVLNETCVKIDGVVYTVESFEDGWYSLDAPPIRIGQPQLFDNRCARDGGAPGACVTLEEDQKRYVLSLIAAHEEMWHTYIPYLDRGQDPQKYVDEVGTDGMLDDWSKRELSSKEREELESVANMRRLSKLAFLDASEADIFHTLPVGARRAGDDGHEEATFLRDFASKKGSLCDLNGLSRLRVPDVLRDQRDRTVMLKRSSDDEVHGSYHAHIDHAVELLQYVYRLNRVMSLHEAYLPLCTEELELLRGHFTCWNDNEDADEHFSLDPYYIGGSKGGMTVAMRFSLERSGHILPVAPPAMIRVLARDQEEHGTLQDRSVHTGITTKIAKALALQKFIMDRYPEVDQREATATTAALGKVYGKVGKFLRKKRNQSGHEEGMHSGLHGPALRVRKGKGLFAGCTNEESLEMLELLFEGMYQNGMKKILDAINEIDTACAGKGGLCYDILKAAQVAAQNTAKKAKFKEEQLEG-DEDQKARIDHVVRELRARVGAREITRKDFMYASVAAALRDMCSSASLRNQGFFFRPATRLCVEHRRESRNLGRMVAGLPKKSKVSKHGNGSGNGVAREHVIDVDCGDWYAITTIIGRPFFRSFDDYDGKQSPYIGPVDERGHAMSQKRFNRIVKKIGRSYLGVQCLTFNQLRSACTSLVFKECTKLGKRMDDPVVTDFASTILSSVKTMRKQYDIHRAARPLDRGIHEKYKGAVDFCGGAYGILKGAVQREREMTGGGKASSAGAGVKEGTGAELRMQRDLELKDR 2517
MKK K A EQV A+ +T D TTRK + +T+ L+ TLV GL G+GEGQLEI GKV+FKRD+L SL+K+Y+LNAKY+P D+GVVL ETCVK DGVVYTVES E+GWYSL I + Q +L ++R + DGG + VTLEED +RY+ SL++ HE M+ + +P+ QK V VGTDGMLDDWSKRELSS+ERE+LESVA+MRRLSKLAF++ S ADIFH LPV A R GD GH+EA FLR FAS KGSLC L+GL LR + DR +M++ S DD +HG+Y +HI++A++LLQY YRL R +S +EAYLP+C E ++L HF CW DNE + E FS++P+ I G MTVAMRFSLER ++P PPAM++VL++D +GTL D+S HTG TK AKAL L K +M R PE+ E+ T ALG+VY +VGKFL+ KRN++G EEG SGL G A + RKG FA EES E+++ L GMY NGMK++LDAI+EID C G G CYDIL+ A+VA+ + K+ F E+QL G DE Q+ RI VV L++R I R+ F AS A +RDM S LRNQGFFFR V RRESRN GRMVAGLP K+ +SKHG+GSGNGVAREHVIDVDCG WYA+T +IGR FF S DD G+ SPYIGPVD RG M+QKRFN IVKKIGR+YL V+ LT Q R+AC +LV T LG M PV+ DFAS LSS K M +Y +HRA +YKG VDF GGAY ILKGAV+ EREM GG SSAG RDL+L++R
Sbjct: 1 MKKNMKLAEEQVRAYADTFDGTTTRKDETMTFPILISTLVDGLPGDGEGQLEIVRGKVYFKRDELDSLKKWYNLNAKYNPTDIGVVLEETCVKFDGVVYTVESVEEGWYSLRDSNIEMEQWELLESRFSEDGGVSNSPVTLEEDLRRYIRSLLSWHELMYRSLVPF-------QKGVQPVGTDGMLDDWSKRELSSEEREQLESVASMRRLSKLAFVNTSVADIFHALPVRATREGDTGHDEANFLRAFASSKGSLCRLDGLGGLREHGDFMVENDRKLMVRMSGDD-LHGAYPSHINYAMQLLQYSYRLTRPISFYEAYLPICAGERKVLSDHFDCWRDNEKSQEDFSVEPFRINGDPKKMTVAMRFSLERCNEVIPNIPPAMVKVLSKDDGRYGTLIDKSNHTGTFTKAAKALPLLKCVMQRDPELGLEESGPTEFALGQVYNQVGKFLQAKRNEAGEEEGRESGLKGVAKKARKGNVPFARLPYEESFELVKFLLRGMYINGMKRVLDAIDEIDGKCLGDDGWCYDILRVAEVASTSVKKRPVFTEKQLRGVDEVQRRRIAAVVEGLKSR----GIRREHFELASAATGVRDMVSPHPLRNQGFFFRRWANFSVNGRRESRNPGRMVAGLPPKNNLSKHGHGSGNGVAREHVIDVDCGYWYAVTNVIGRAFFESVDDPQGELSPYIGPVDARGGVMAQKRFNGIVKKIGRAYLAVENLTIMQFRTACCTLVMSLSTALGIPMSSPVIKDFASGFLSSEKMMETRYYVHRAVTKQTGRFQLRYKGVVDFSGGAYSILKGAVEHEREMEGG---SSAGG-------------RDLQLRER 813
BLAST of mRNA_Ecto-sp13_S_contig7.18026.1 vs. uniprot
Match: D8LD08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD08_ECTSI) HSP 1 Score: 573 bits (1476), Expect = 1.550e-189 Identity = 313/630 (49.68%), Postives = 413/630 (65.56%), Query Frame = 1
Query: 550 MLDDWSKRELSSKEREELESVANMRRLSKLAFLDASEADIFHTLPVGARRAGDDGHEEATFLRDFASKKGSLCDLNGLSRLRVPD----VLRDQRDRTVMLKRSS--DDEVHGSYHAHIDHAVELLQYVYRLNRVMSLHEAYLPLCTEELELLRGHFTCWNDNEDADEHFSLDPYYIGGSKGGMTVAMRFSLERSGHILPVAPPAMIRVLARDQEEHGTLQDRSVHTGITTKIAKALALQKFIMDRYPEVDQREATATTAALGKVYGKVGKFLRKKRNQSGHEEGMHSGLHGPALRVRKGKGLFAGCTNEESLEMLELLFEGMYQNGMKKILDAINEIDTACAGKGGLCYDILKAAQVAAQNTAKKAKFKEEQLEGDEDQKARIDHVVRELRARVGAREITRKDFMYASVAAALRDMCSSASLRNQGFFFRPATRLCVEHRRESRNLGRMVAGLPKKSKVSKHGNGSGNGVAREHVIDVDCGDWYAITTIIGRPFFRSFDDYDGKQSPYIGPVDERGHAMSQKRFNRIVKKIGRSYLGVQCLTFNQLRSACTSLVFKECTKLGKRMDDPVVTDFASTILSSVKTMRKQYDIHRAARPLDRGIHEKYKGAVDFCGGAYGILKGAVQREREM 2421
ML+DWS R+LS E+ ELE +ANMRRLS L F +AS D HTLPV A GD GHEEAT LR FAS +GSL LN L L D L D D+ +M++ + + VHG+Y +HI+H V LLQY YRLNR +SLHE Y PLC E E+LR HF CW+DNED + +++ S G T AMRFSLE S +LPV PP MI VL+RD +++GT D S + +K+AKA + K +MD+ +Q T AA+ ++Y ++ L KR Q+G EG SGL G A + +KG+ +NE +L L+LLF+G+Y NGMK ++DAI EID CAGKGG CYDIL+AA+ A NT KKA EQLEG+ Q+ + +V L+ + +TRK F ASV A++RD+ +S LRNQGF++R AT L V + ES+N GR+VA LP KSKVSKHGNGSG+G A+EHVIDVD GDWYAI ++GR F RSF + S +IGP+D++G+ M +RF I+KKIG++YL + ++ +R+ +LV ECT LG RMDDP++ DFAS+ILSS TM+K YD HRA R + Y+G +DF GGAYG+++G+ +R EM
Sbjct: 1 MLEDWSNRDLSRDEKTELEGIANMRRLSILVFANASVEDTVHTLPVKATEEGDAGHEEATALRAFASSEGSLSKLNFLGGLGGADNISAALVDDNDKKLMVRMVARKGESVHGAYPSHINHVVHLLQYTYRLNRPISLHEGYHPLCAAEREVLREHFGCWDDNEDDQDDYTISLVSTNFS-GDKTFAMRFSLESSNEVLPVMPPTMIGVLSRDPDKYGTKLDTSSYVDTFSKVAKAFDVLKIVMDQNAVDNQGGGGQTDAAIERMYAQIKYLLHDKRLQAGALEGKISGLTGVATKTKKGRVPLVTFSNEHNLRALKLLFKGLYVNGMKPLMDAIAEIDATCAGKGGWCYDILRAAEFPATNTKKKAVVTVEQLEGNAKQRLLVMKMVEALKEK----GVTRKHFELASVCASVRDVFTSYPLRNQGFYYRRATHLHVNGQNESKNPGRVVARLPGKSKVSKHGNGSGDGAAQEHVIDVDTGDWYAIPNVVGRAFHRSFSGDNSIASQFIGPMDKKGNDMKPERFKGILKKIGQAYLSSENMSVTSMRTVVVTLVMAECTALGIRMDDPIIKDFASSILSS--TMQKHYDAHRATIRQSRRVQRGYEGTIDFSGGAYGVVEGSEKRRLEM 623
BLAST of mRNA_Ecto-sp13_S_contig7.18026.1 vs. uniprot
Match: A0A6H5JK98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK98_9PHAE) HSP 1 Score: 238 bits (608), Expect = 8.020e-62 Identity = 223/766 (29.11%), Postives = 353/766 (46.08%), Query Frame = 1
Query: 211 YDLNAKYDPADVGVVLNETCVKIDGVVYTVESFEDGWYSL----DAPPIRIGQPQLFDNRCARDGGAPGACVTLEEDQKRYVLSLIAAHEEMWHTYIPYLDRGQ----DPQKYVDEVGTDGMLDDWSKRELSSKEREELESVANMRRLSKLAFLDASEADIFHTLPV-GARRAGDDGHEEATFLRDFASKKGSLCDLNGLSRLRVPDVLRDQR--DRTVMLKRSS----DDEVHGSYHAHIDHAVELLQYVYRLNRVMSLHEAYLPLCTEELELLRGHFTCWNDNEDADEHFSLDPYYIGGSKGGMTVAMRFSLERSGHILPVAPPAMIRVLARDQEEHGTLQDRSVHTGITTKIAKALALQKFIMDRYPEVDQREATATTAALGKVYGKVGKFLRKKRNQSGHEEGMHSGLHGPALRVRKGKGLFAGCTNEESLEMLELLFEGMYQNGMKKILDAINEIDTACAGKGGLCYDILKAAQVAAQNTAKKAKFKEEQLEG-DEDQKARIDHVVRELRARVGAREITRKDFMYASVAAALRDMCSSASLRNQGFFFRPATRLCVEHRRESRNLGRMVAGLPKK-SKVSKHGNGSGN-GVAREHVIDVDCGDWYAITTIIGRPFFRSFDDYDGKQ-SPYIGPVDERGHAMSQKRFNRIVKKIGRSYLGVQCLTFNQLRSACTSLVFKECTKLGKRMDDPVVTDFASTILSSVKTMRKQYDIHRAARPLDRGIHEKYKGAVDFCGGAYGILKGAVQRER-------EMTGG 2430
Y++ +K +P D+G+++ ET VK+DGV YTV S EDG YSL A +GQ ++ +NR DG TLEEDQ+++ +SLI + MW T +PYL+ GQ + + V + D S L+++ E V R L+K A D L G + GDD LR FA ++GSL +LNGL +L L D+ D+ ++L S + G + A I+H + + QY YRL R S+HE Y PLC +E+ L F W +++D D L + M+ A RF++ RS I P PA + + +RD E+HG++ D S H + TK KA + K+I+ D + TA ++ + R + + +G G + ++KGK +S E L L+ E + +NG + I+ ID GK G C++I+ A + + G + +K RID +V +L+ + +DF A A ++ + A LR+Q F R + R E++ GR G + +V+ G G G +E V D C +W + +IG F+ D +G +G + G + F+ ++KK+G ++LGV+ LT + LR+ +SL K G ++D + A ++ + VK + Y+ PL G H K + D G ++ ER E+TGG
Sbjct: 182 YNMVSKVNPGDIGIIMGETRVKMDGVHYTVVSVEDGLYSLAKDGGAASKELGQWEVLENRI-HDGQGHA---TLEEDQRKFAISLILQYGNMWLTMVPYLNHGQAAIPEGEGRVQVSNMTYKMTDVSGEGLAARH----EDVMTARSLTKAALKKLKMVDAIDGLRFPGLAQEGDDD------LRTFAEREGSLGELNGLQKL-----LGDKSGLDKKILLNIRSRYPPGMKPTGDFKAVINHMLRVQQYAYRLGRPASIHEGYHPLCDKEVTALSKFFRGWEEDDD-DSGQCLG---TSSTSENMSWATRFAVRRSSMIYPDLFPASLEIESRDTEKHGSVVDSSKHVNVYTKTRKAKHVIKWILQNGGVCDNMDKKIDTAVA--IFELTKSTVTDARAKKKDYDDTTTGSQGDSNTLKKGKLPLLLLDPLKSEECLRLMTEALTKNGWGYLRGQIDLIDPMAWGKNGWCWEIVVDGFKDATDKSNPPATGHAHFGGRNGKEKKRIDRMVEKLKDA----GVELRDFEAAWGATSVLSAYNGACLRDQ--FHRFLKKRTAHIRSENKVTGRRGLGDGRNVDRVTMWPPGKGKTGKCKERVFDPLCSEWLTVLLVIGWAFY----DKEGVVLEDEMGIPNSNGKMKLKGSFDVVMKKVGSTFLGVENLTLHNLRTVVSSLAVKYFYGKGYNLNDAPLLQLAESMDTGVKMLVGPYN-DAVLGPLQHG-HLKNEKDADVSLGIQELVSYFADLERKGIRVTGEVTGG 910
BLAST of mRNA_Ecto-sp13_S_contig7.18026.1 vs. uniprot
Match: D7G514_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G514_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.350e-18 Identity = 57/115 (49.57%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 589 EREELESVANMRRLSKLAFLDASEADIFHTLPVGARRAGDDGHEEATFLRDFASKKGSLCDLNGLSRL----RVPDVLRDQRDRTVMLKRSS--DDEVHGSYHAHIDHAVELLQY 915
E+ EL VA MRRLS+LAF +AS D H LPV A GD GHEEA LR FAS +GSL LN L + D L D D +M++ + VHG+Y +HI+HAV LLQY
Sbjct: 27 EKAELGGVATMRRLSRLAFANASMEDTVHALPVKATAEGDAGHEEAIALRAFASSEGSLSKLNFLGGIGGADETSDALVDDNDTALMIRMVTRKGKSVHGAYPSHINHAVHLLQY 141 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7.18026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7.18026.1 >prot_Ecto-sp13_S_contig7.18026.1 ID=prot_Ecto-sp13_S_contig7.18026.1|Name=mRNA_Ecto-sp13_S_contig7.18026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=919bp MKKREKQALEQVEAFKETVDKTTRKIDKLTYLGLVRTLVGGLTGEGEGQLback to top mRNA from alignment at Ecto-sp13_S_contig7:16836..20450+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7.18026.1 ID=mRNA_Ecto-sp13_S_contig7.18026.1|Name=mRNA_Ecto-sp13_S_contig7.18026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:16836..20450+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7:16836..20450+ >mRNA_Ecto-sp13_S_contig7.18026.1 ID=mRNA_Ecto-sp13_S_contig7.18026.1|Name=mRNA_Ecto-sp13_S_contig7.18026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2757bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:16836..20450+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |