prot_Ecto-sp13_S_contig7.18024.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7.18024.1
Unique Nameprot_Ecto-sp13_S_contig7.18024.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length470
Homology
BLAST of mRNA_Ecto-sp13_S_contig7.18024.1 vs. uniprot
Match: D7FGT8_ECTSI (SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT8_ECTSI)

HSP 1 Score: 746 bits (1925), Expect = 5.170e-254
Identity = 396/469 (84.43%), Postives = 418/469 (89.13%), Query Frame = 0
Query:    1 MPFGDHCEPDVDWSPCADSTGYPAVLPVYYLCYASLYGATGLLYATSMGRTMQNQLREKRKLSFNSAMQMHVGIITFSIAGFIRGVDMKLVARSRPVLDYLRRVKHVVIGSSVLWCLRTVFFVISACMDKPLPVLVWAVLRGGTAVTGIATALLYYVVIGSNVAARAAKAAANEGSRRPDGVGQASGTMTGNGTVQKKFQALAKIVSNGANQLIETTIASMGETSARVHVDGDSEEPKLFQRIASGTRWSTRGRVDSGASSRGSFSKKAAEGGGATAPLRSETGDSMKLPDELSSETKQPMADTRGSQVRMRDGFTFDVRSADDSDGGGDGKSRYPSVRNLGGCGGKERGGGGMWHTPVSPVTTPTPSPPGGFTDGGGVPEERKSELTDCEXXXXXXXXXXXXXXXXXXKSGLQKRSSWSRAHLTSSDDSAASSGESRNKTEEFWELEELEAGSFYNSSSREASNQSSR 469
            MPFGDHCEPDVDWSPCADSTGYPAVL VYY CYASLYGATGLLYATSMGRTMQNQLREK+KLSFNSAMQMHVGIITFS+AGFIRGVDMKLVARSRPVLDYLRRVK+VVIGSSVLWCLRTV FVISACMDKPLPVLVW VLRGGTAVTGIATALLYYVVIGSNVAARAAKAAA+EGSRRPDGVGQ          VQKKFQALAKIVSNGANQLIETTIAS+GETSARV+VDGDSEEPKLFQRIASGTRWSTRGRVDSGASSRGS S+K  EGGGATA LRS TGDS+K+PDELSSETKQPMADTRG+QV MR+GFTFD+RSAD+SDGGGDGKSR+PSVRNLGG GGKERGGGGMWHTPVSPVTTPTPSPPGGF DGG VPEERK+ELT+CE                  K GLQKRSSW RAHL SS+D+A SS ESR KTE+ WELEELEAGSF +SS RE S++SSR
Sbjct: 1086 MPFGDHCEPDVDWSPCADSTGYPAVLTVYYPCYASLYGATGLLYATSMGRTMQNQLREKKKLSFNSAMQMHVGIITFSLAGFIRGVDMKLVARSRPVLDYLRRVKYVVIGSSVLWCLRTVLFVISACMDKPLPVLVWVVLRGGTAVTGIATALLYYVVIGSNVAARAAKAAASEGSRRPDGVGQ----------VQKKFQALAKIVSNGANQLIETTIASIGETSARVYVDGDSEEPKLFQRIASGTRWSTRGRVDSGASSRGSVSRKVTEGGGATAQLRSGTGDSLKVPDELSSETKQPMADTRGAQVGMREGFTFDLRSADNSDGGGDGKSRHPSVRNLGGRGGKERGGGGMWHTPVSPVTTPTPSPPGGFNDGGEVPEERKNELTECEDTDANSGDEGSGEDQQRRKPGLQKRSSWCRAHLPSSEDTAGSSDESRKKTEQVWELEELEAGSFSHSSYREVSDRSSR 1544          
BLAST of mRNA_Ecto-sp13_S_contig7.18024.1 vs. uniprot
Match: A0A6H5KV19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV19_9PHAE)

HSP 1 Score: 656 bits (1692), Expect = 3.240e-233
Identity = 366/507 (72.19%), Postives = 379/507 (74.75%), Query Frame = 0
Query:    1 MPFGDHCEPDVDWSPCADSTGYPAVLPVYYLCYASLYGATGLLYATSMGRTMQNQLREKRKLSFNSAMQMHVGIITFSIAGFIRGV-----------------------------------DMKLVARSRPVLDYLRRVKHVVIGSSVLWCLRTVFFVISACMDKPLPVLVWAVLRGGTAVTGIATALLYYVVIGSNVAARAAKAAANEGSRRPDGVGQASGTMTGNGTVQKKFQALAKIVSNGANQLIETTIASMGETSARVHVDGDSEEPKLFQRIASGTRWSTRGRVDSGASSRGSFSKKAAEGGGATAPLRSETGDSMKLPDELSSETKQPMADTRGSQVR-------------MRDGFTFDVRSADDSDGGGDGKSRYPSVRNLGGCGGKERGGGGMWHTPVSPVTTPTPSPPGGFTDGGGVPEERKSELTDCEXXXXXXXXXXXXXXXXXXKSGLQKRSSWSRAHLTSSDDSAASSGESRNKTEEFWELEELEAGSFYNSS 459
            M FGDHCEPDVDWSPCADSTGYPAVLPVYYLCYASLYG+TGLLYATSMGRT+QNQLREKRKLSFNSA+QMHVGII FSIAG IRGV                                   DMKLVARSRPVLDYLRRVK+VVIGSSVLWCLRTV FV SACMDKPLPVLVWAVLRGGTA TGIATALLYYVVIG+                                 VQKKFQALA IVSNGA+Q I+T IASMGE SARV+VDGDSEEPKLFQRIASG RWSTR RVDSG SSRGSFSKKAAEGGGATAPLRS TGDSMK+PDELSSETKQPMADTRG+QV              MRDGFTFDVRSADDSDG GDGKS+YPSV++LGGCGGKERGG   WHTPVSP TTPTPSPP GFTDG  VPEERKSELTDCE                  K GLQKRSSWSRAHLTSSD SA SS ESR KTEEFWELEELE GSFYNSS
Sbjct:    1 MSFGDHCEPDVDWSPCADSTGYPAVLPVYYLCYASLYGSTGLLYATSMGRTVQNQLREKRKLSFNSAIQMHVGIIAFSIAGLIRGVPLKASRKARTSINDTIEVPRLRHKSTLFYPVAALQDMKLVARSRPVLDYLRRVKYVVIGSSVLWCLRTVLFVTSACMDKPLPVLVWAVLRGGTAATGIATALLYYVVIGAC-------------------------------QVQKKFQALATIVSNGASQFIKTPIASMGEASARVYVDGDSEEPKLFQRIASGMRWSTRRRVDSGTSSRGSFSKKAAEGGGATAPLRSGTGDSMKVPDELSSETKQPMADTRGAQVGPADPAMSQGRVVGMRDGFTFDVRSADDSDGEGDGKSKYPSVKDLGGCGGKERGGEETWHTPVSPATTPTPSPPEGFTDGSEVPEERKSELTDCEDGDANSGDEGWGEDQQRRKPGLQKRSSWSRAHLTSSDASAGSSSESRKKTEEFWELEELEEGSFYNSS 476          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7.18024.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGT8_ECTSI5.170e-25484.43SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1... [more]
A0A6H5KV19_9PHAE3.240e-23372.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 106..127
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 159..469
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 87..105
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..86
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..66
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 134..158
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 128..133
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..27
NoneNo IPR availableTMHMMTMhelixcoord: 137..159
NoneNo IPR availableTMHMMTMhelixcoord: 22..44
NoneNo IPR availableTMHMMTMhelixcoord: 106..125
NoneNo IPR availableTMHMMTMhelixcoord: 64..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7contigEcto-sp13_S_contig7:4412..12008 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7.18024.1mRNA_Ecto-sp13_S_contig7.18024.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7 4412..12008 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7.18024.1 ID=prot_Ecto-sp13_S_contig7.18024.1|Name=mRNA_Ecto-sp13_S_contig7.18024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=470bp
MPFGDHCEPDVDWSPCADSTGYPAVLPVYYLCYASLYGATGLLYATSMGR
TMQNQLREKRKLSFNSAMQMHVGIITFSIAGFIRGVDMKLVARSRPVLDY
LRRVKHVVIGSSVLWCLRTVFFVISACMDKPLPVLVWAVLRGGTAVTGIA
TALLYYVVIGSNVAARAAKAAANEGSRRPDGVGQASGTMTGNGTVQKKFQ
ALAKIVSNGANQLIETTIASMGETSARVHVDGDSEEPKLFQRIASGTRWS
TRGRVDSGASSRGSFSKKAAEGGGATAPLRSETGDSMKLPDELSSETKQP
MADTRGSQVRMRDGFTFDVRSADDSDGGGDGKSRYPSVRNLGGCGGKERG
GGGMWHTPVSPVTTPTPSPPGGFTDGGGVPEERKSELTDCEDDDANNGDE
GSGEDQQRRKSGLQKRSSWSRAHLTSSDDSAASSGESRNKTEEFWELEEL
EAGSFYNSSSREASNQSSR*
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