prot_Ecto-sp13_S_contig12121.1802.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12121.1802.1
Unique Nameprot_Ecto-sp13_S_contig12121.1802.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length139
Homology
BLAST of mRNA_Ecto-sp13_S_contig12121.1802.1 vs. uniprot
Match: D7FHD2_ECTSI (PRP1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD2_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 1.260e-60
Identity = 110/131 (83.97%), Postives = 110/131 (83.97%), Query Frame = 0
Query:    1 GVTVTEPVRLHSYLTDLNSLKISSDAEVGDIEKARLLLKSVTSTNPKHGPGWIAAARVEEFAGKI--ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKXXXXXXXXXXTNASKKV 129
             VT    V    YLTDLNSLKISSDAEVGDIEKARLLLKSVTSTNPKHGPGWIAAARVEEFAGKI  ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVK          TNASKKV
Sbjct:  133 SVTGQTAVNPKGYLTDLNSLKISSDAEVGDIEKARLLLKSVTSTNPKHGPGWIAAARVEEFAGKIVQARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETTNASKKV 263          
BLAST of mRNA_Ecto-sp13_S_contig12121.1802.1 vs. uniprot
Match: A0A6H5L0W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W4_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 3.730e-52
Identity = 86/97 (88.66%), Postives = 87/97 (89.69%), Query Frame = 0
Query:   33 KARLLLKSVTSTNPKHGPGWIAAARVEEFAGKIARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKXXXXXXXXXXTNASKKV 129
            +ARLLLKSVTSTNPKHGPGWIAAARVEEFAGKIARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVK          TNASKKV
Sbjct:    4 QARLLLKSVTSTNPKHGPGWIAAARVEEFAGKIARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKIWLRAAELETTNASKKV 100          
BLAST of mRNA_Ecto-sp13_S_contig12121.1802.1 vs. uniprot
Match: A0A835YM25_9STRA (PRP1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM25_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.960e-50
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = 0
Query:    1 GVTVTEPVRLHSYLTDLNSLKISSDAEVGDIEKARLLLKSVTSTNPKHGPGWIAAARVEEFAGKI--ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVK 112
            G TV +P     YLTDLNSLKI+SDAEVGDIEKARLL++SVTSTNPKHGPGWIAAAR+EE+AGK+  ARK IK GCE CPDNEDVWLE ARLQTP+NAKTVLANA+R+LP SVK
Sbjct:  125 GQTVVDP---KGYLTDLNSLKINSDAEVGDIEKARLLMRSVTSTNPKHGPGWIAAARLEEYAGKLVAARKVIKQGCETCPDNEDVWLEAARLQTPDNAKTVLANAVRHLPGSVK 235          
BLAST of mRNA_Ecto-sp13_S_contig12121.1802.1 vs. uniprot
Match: A0A7S3XY73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY73_HETAK)

HSP 1 Score: 163 bits (412), Expect = 3.320e-44
Identity = 89/131 (67.94%), Postives = 101/131 (77.10%), Query Frame = 0
Query:    1 GVTVTEPVRLHSYLTDLNSLKISSDAEVGDIEKARLLLKSVTSTNPKHGPGWIAAARVEEFAGKI--ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKXXXXXXXXXXTNASKKV 129
            G TV +P     YLTDLNSLKISSDAEVGDIEKARLLL SV  TNP+HGP WIA+ARVEE+AGK+  ARK I+ GCEACPD EDVWLE ARL  P+NAK +LA+A++ LP SVKXXXXX        +KKV
Sbjct:   38 GQTVVDP---KGYLTDLNSLKISSDAEVGDIEKARLLLASVRRTNPRHGPAWIASARVEEYAGKVVQARKVIREGCEACPDAEDVWLEAARLHPPQNAKAILASAVQRLPASVKXXXXXADLEADAPAKKV 165          
BLAST of mRNA_Ecto-sp13_S_contig12121.1802.1 vs. uniprot
Match: A0A7S4LDX4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LDX4_9EUGL)

HSP 1 Score: 151 bits (381), Expect = 3.930e-43
Identity = 77/127 (60.63%), Postives = 92/127 (72.44%), Query Frame = 0
Query:    3 TVTEPVRLHSYLTDLNSLKISSDAEVGDIEKARLLLKSVTSTNPKHGPGWIAAARVEEFAGKIA--RKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKXXXXXXXXXXTNASK 127
            TV +P     YLT+LNS+KI++D+E+GD+++ARLLLKSVT+TNP HGPGWIAAARVEE AG+IA  RK I  GCE CP +EDVWLE  RLQTP NAK VLA A+  LP SVK          T+  K
Sbjct:    1 TVVDP---KGYLTNLNSMKITNDSEIGDLKRARLLLKSVTTTNPHHGPGWIAAARVEEIAGRIAVARKIIAEGCETCPMSEDVWLEAVRLQTPANAKIVLAKAVEKLPHSVKLWIQAAALEHTDVQK 124          
BLAST of mRNA_Ecto-sp13_S_contig12121.1802.1 vs. uniprot
Match: R1E6U8_EMIHU (PRP1_N domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E6U8_EMIHU)

HSP 1 Score: 160 bits (406), Expect = 4.310e-43
Identity = 80/114 (70.18%), Postives = 94/114 (82.46%), Query Frame = 0
Query:    1 GVTVTEPVRLHSYLTDLNSLKISSDAEVGDIEKARLLLKSVTSTNPKHGPGWIAAARVEEFAGKI--ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVK 112
            G TV +P     YLTDLNS+K+S++AE+GDI+KARLLLKSVT TNP HGPGWIAAAR+EE AGK+  AR+ I+ GC AC  NEDVWLE ARLQTPENAK VLA+AI+ +PTSVK
Sbjct:  241 GQTVVDP---KGYLTDLNSVKVSTEAEIGDIKKARLLLKSVTQTNPGHGPGWIAAARLEEVAGKLVAARQIIREGCRACAANEDVWLEAARLQTPENAKVVLADAIKKIPTSVK 351          
BLAST of mRNA_Ecto-sp13_S_contig12121.1802.1 vs. uniprot
Match: A0A3M6VD23_9STRA (PRP1_N domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VD23_9STRA)

HSP 1 Score: 160 bits (406), Expect = 4.400e-43
Identity = 80/113 (70.80%), Postives = 92/113 (81.42%), Query Frame = 0
Query:    1 GVTVTEPVRLHSYLTDLNSLKISSDAEVGDIEKARLLLKSVTSTNPKHGPGWIAAARVEEFAGKI--ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSV 111
            G TV +P     YLTDLNSLK++SDAE+GDI+KARLLLKSVT TNPKHGPGW+AAAR+EE AGKI  ARK I  GCE+C   EDVWLE ARLQ PENAKT+LA A+R++P SV
Sbjct:  281 GQTVVDP---KGYLTDLNSLKLTSDAEIGDIKKARLLLKSVTMTNPKHGPGWVAAARLEEVAGKIVQARKIIAQGCESCSTQEDVWLEAARLQNPENAKTILAKAVRHVPKSV 390          
BLAST of mRNA_Ecto-sp13_S_contig12121.1802.1 vs. uniprot
Match: A0A7S3LP65_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LP65_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.570e-42
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 0
Query:    1 GVTVTEPVRLHSYLTDLNSLKISSDAEVGDIEKARLLLKSVTSTNPKHGPGWIAAARVEEFAGKI--ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVKXXXXXXXXXXTNASKKVR 130
            G TV +P     YLTDLNSL+++S AE+GDI+KARLL KSVTSTNPKH PGWIAAAR+EE AGK+  AR  I+ GCEACP++EDVWLE ARLQT ++AK VLANA+R++P SVK          +N + K +
Sbjct:  120 GQTVVDP---KGYLTDLNSLRVNSSAEIGDIKKARLLYKSVTSTNPKHAPGWIAAARLEEVAGKLLQARVLIQKGCEACPESEDVWLEAARLQTAQHAKAVLANAVRHIPRSVKLWLHAADLESSNPTNKKK 248          
BLAST of mRNA_Ecto-sp13_S_contig12121.1802.1 vs. uniprot
Match: F0VZ29_9STRA (Uncharacterized protein AlNc14C1G170 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZ29_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.120e-42
Identity = 80/114 (70.18%), Postives = 92/114 (80.70%), Query Frame = 0
Query:    1 GVTVTEPVRLHSYLTDLNSLKISSDAEVGDIEKARLLLKSVTSTNPKHGPGWIAAARVEEFAGKI--ARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVK 112
            G TV +P     YLTDLNSLKI+SD E+GDI+KARLLL SVT TNPKHGPGWIAAAR+EE AGKI  ARK I+ GCE+C   EDVWLE AR Q+PENA+ VLA AIR++PTS+K
Sbjct:  307 GQTVVDP---KGYLTDLNSLKITSDVEIGDIKKARLLLHSVTMTNPKHGPGWIAAARLEEVAGKIVQARKLIRQGCESCSTQEDVWLEAARFQSPENARGVLAKAIRHVPTSIK 417          
BLAST of mRNA_Ecto-sp13_S_contig12121.1802.1 vs. uniprot
Match: A0A7S1U7V1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7V1_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.580e-41
Identity = 76/114 (66.67%), Postives = 94/114 (82.46%), Query Frame = 0
Query:    1 GVTVTEPVRLHSYLTDLNSLKISSDAEVGDIEKARLLLKSVTSTNPKHGPGWIAAARVEEFAGKIA--RKTIKAGCEACPDNEDVWLEGARLQTPENAKTVLANAIRNLPTSVK 112
            G TV +P     YLTDLNS+ + SDAEVGDI+KA+LLLKSVTSTNP+H PGWIAAARVEE+AGKIA  R+ I+ GCE CP+ EDVWLE ARL + +NAK +LA+A++++PTSVK
Sbjct:  187 GQTVVDP---KGYLTDLNSVTLRSDAEVGDIKKAQLLLKSVTSTNPRHAPGWIAAARVEEYAGKIAQARRKIREGCEKCPEAEDVWLEAARLHSGDNAKAILADAVKHVPTSVK 297          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12121.1802.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHD2_ECTSI1.260e-6083.97PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L0W4_9PHAE3.730e-5288.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YM25_9STRA1.960e-5078.95PRP1_N domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S3XY73_HETAK3.320e-4467.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4LDX4_9EUGL3.930e-4360.63Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
R1E6U8_EMIHU4.310e-4370.18PRP1_N domain-containing protein n=1 Tax=Emiliania... [more]
A0A3M6VD23_9STRA4.400e-4370.80PRP1_N domain-containing protein n=7 Tax=Peronospo... [more]
A0A7S3LP65_9STRA1.570e-4260.61Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
F0VZ29_9STRA2.120e-4270.18Uncharacterized protein AlNc14C1G170 n=1 Tax=Albug... [more]
A0A7S1U7V1_9STRA4.580e-4166.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 91..123
e-value: 0.012
score: 24.8
coord: 29..61
e-value: 0.23
score: 20.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 14..128
e-value: 8.1E-8
score: 33.5
NoneNo IPR availablePANTHERPTHR11246PRE-MRNA SPLICING FACTORcoord: 3..129
IPR027108Pre-mRNA-processing factor 6/Prp1/STA1PANTHERPTHR11246:SF1PRE-MRNA-PROCESSING FACTOR 6coord: 3..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12121contigEcto-sp13_S_contig12121:888..2330 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12121.1802.1mRNA_Ecto-sp13_S_contig12121.1802.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12121 888..2330 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12121.1802.1 ID=prot_Ecto-sp13_S_contig12121.1802.1|Name=mRNA_Ecto-sp13_S_contig12121.1802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
GVTVTEPVRLHSYLTDLNSLKISSDAEVGDIEKARLLLKSVTSTNPKHGP
GWIAAARVEEFAGKIARKTIKAGCEACPDNEDVWLEGARLQTPENAKTVL
ANAIRNLPTSVKIWLRAAELETTNASKKVREHLDFSSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR011990TPR-like_helical_dom_sf
IPR027108Prp6/Prp1/STA1