mRNA_Ecto-sp13_S_contig7.18025.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7.18025.1
Unique NamemRNA_Ecto-sp13_S_contig7.18025.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7.18025.1 vs. uniprot
Match: D7FHI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI9_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 8.070e-15
Identity = 73/186 (39.25%), Postives = 78/186 (41.94%), Query Frame = 1 
Query:    1 HPDDIPELIYTKFGTVTKTGSNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDCGVAPMEVSDDDIASDFGDFGGDFGGGERSDGDVDDXXXXXXXXXXXXXXXXXAPSPTYHASSIP------SSPDTGKQQEDLDDERDALPLSGGGVRTSARRRHPSRFRVECPVFHRFPGRRESWRQGQ 540
            +PD+IPEL YT  GTV  TGSNI                              G DCGVAPM VSDDDIA      GGDFGG   SDGDVD XX           XXXX                   +PD         +ER   P   G V T +          ECPVF RFPGRRE W QGQ
Sbjct:   11 NPDNIPELAYTTKGTVRVTGSNIPKSNGHGGGGKLTAGGAGGR----------GSDCGVAPMGVSDDDIA------GGDFGGXXSSDGDVDXXXGSAASTSSPTNXXXXXXXXXXXXXXXXXXXXXXGTPDA--------NERQVAPAFDGAVPTGS----------ECPVFRRFPGRRERWWQGQ 162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7.18025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHI9_ECTSI8.070e-1539.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7contigEcto-sp13_S_contig7:15567..16759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size567
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_002200.1
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463959.1555815-CDS-Ecto-sp13_S_contig7:15566..157061681463959.1555815-CDS-Ecto-sp13_S_contig7:15566..15706Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7 15567..15706 +
1681463959.1708882-CDS-Ecto-sp13_S_contig7:15987..162711681463959.1708882-CDS-Ecto-sp13_S_contig7:15987..16271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7 15988..16271 +
1681463959.1805108-CDS-Ecto-sp13_S_contig7:16592..167101681463959.1805108-CDS-Ecto-sp13_S_contig7:16592..16710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7 16593..16710 +
1681463959.1893983-CDS-Ecto-sp13_S_contig7:16734..167591681463959.1893983-CDS-Ecto-sp13_S_contig7:16734..16759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7 16735..16759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7.18025.1prot_Ecto-sp13_S_contig7.18025.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7 15567..16759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7.18025.1

>prot_Ecto-sp13_S_contig7.18025.1 ID=prot_Ecto-sp13_S_contig7.18025.1|Name=mRNA_Ecto-sp13_S_contig7.18025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
HPDDIPELIYTKFGTVTKTGSNININGGSGGGGGRSGSRGGGRGRGNDDD
GAGGGDCGVAPMEVSDDDIASDFGDFGGDFGGGERSDGDVDDGDDSAAST
SSSTSSTESAPSPTYHASSIPSSPDTGKQQEDLDDERDALPLSGGGVRTS
ARRRHPSRFRVECPVFHRFPGRRESWRQGQGQGQGQGQG
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mRNA from alignment at Ecto-sp13_S_contig7:15567..16759+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7.18025.1 ID=mRNA_Ecto-sp13_S_contig7.18025.1|Name=mRNA_Ecto-sp13_S_contig7.18025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:15567..16759+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCCTGACGACATCCCCGAGTTGATATACACCAAGTTTGGTACAGTAAC
AAAGACGGGCAGCAACATCAATATCAACGGTGGTAGTGGCGGTGGCGGTG
GCCGTAGTGGCAGCCGTGGTGGTGGCCGTGGTCGTGGCAAGTCCGGTGGT
GGCCGCGGCGGTGATGGTAACCGCAAGAACGCTGGTGCGGTGGCGTTAAA
CGCAAGTCCGATGGGGGCGGTGGCCGCGGCGACGGCAACGACGACGACGA
CAGCGCGGCTCCCACGAATGTGGTTTGTGGTGGTGGCCGTGGCAGTGGCC
GTGGTGGTGGCCGTGGTGGTGGCGGTGGCCGTGGAGGCAAACCCAAGACC
GGCGGGGGCAGTTGCCGCAGCAGTGGCGGCACACACAAGTCCGATGGGGG
CGGTGGCGGTGGCGACGGCAGCGACGACGACGGTGCGGGTGGCGGTGACT
GTGGGGTCGCTCCCATGGAAGTGAGCGACGATGATATCGCCAGTGACTTT
GGTGACTTTGGTGGTGACTTTGGTGGCGGCGAAAGAAGCGACGGGGACGT
TGACGATGGCGACGATTCCGCTGCGAGTACTTCGTCTTCGACCAGTTCCA
CCGAGAGTGCCCCGTCTCCCACTTATCACGCGTCGAGCATCCCGTCTTCA
CCAGATACCGGCAAGCAGCAGGAGGACTTGGATGACGAGCGGGACGCTCT
ACCGTGTCAGAAATGCGGCAAAAACGACGACATTCCAAACACTTTGCTCT
GCGCCAGGCCCATCGGGCGCAAGGAGGACGGCAGGTTCTGTGACAAGGCC
TGCCATGTCCGGTGCACAGGTTTAGAAGATGTGCCAGAGGGAGATGTGAG
TGAATATACGGTAAAAACAGATTAAAACAAGTCTCCCTGCAGGAAATAGC
AAATTTGCGTCTTCTCTCCGTGGCACCCGCTAACCTCCTGAGTTGACAAA
GGCGATCATACTGACCAATCTCTCCTTCTCTTTTTTACTGCCCTATGTGT
TGCTGTCTCAGTGGTATTGCCCAGAGTGTCTGGAGGAGGGGTTCGTACCT
CCGCCAGGAGGCGCCATCCCTCCCGTTTCCGCGTCGAGTGCCCCGTCTTC
CACCGATTCCCGGGACGGAGGGAAAGTTGGCGGCAAGGGCAAGGGTAACG
GTAAGGGCAAGGGAAAAGGCAAGGGCAGGGGCAAGGGCAAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7:15567..16759+

>mRNA_Ecto-sp13_S_contig7.18025.1 ID=mRNA_Ecto-sp13_S_contig7.18025.1|Name=mRNA_Ecto-sp13_S_contig7.18025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7:15567..16759+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCCTGACGACATCCCCGAGTTGATATACACCAAGTTTGGTACAGTAAC
AAAGACGGGCAGCAACATCAATATCAACGGTGGTAGTGGCGGTGGCGGTG
GCCGTAGTGGCAGCCGTGGTGGTGGCCGTGGTCGTGGCAACGACGACGAC
GGTGCGGGTGGCGGTGACTGTGGGGTCGCTCCCATGGAAGTGAGCGACGA
TGATATCGCCAGTGACTTTGGTGACTTTGGTGGTGACTTTGGTGGCGGCG
AAAGAAGCGACGGGGACGTTGACGATGGCGACGATTCCGCTGCGAGTACT
TCGTCTTCGACCAGTTCCACCGAGAGTGCCCCGTCTCCCACTTATCACGC
GTCGAGCATCCCGTCTTCACCAGATACCGGCAAGCAGCAGGAGGACTTGG
ATGACGAGCGGGACGCTCTACCGTTGTCTGGAGGAGGGGTTCGTACCTCC
GCCAGGAGGCGCCATCCCTCCCGTTTCCGCGTCGAGTGCCCCGTCTTCCA
CCGATTCCCGGGACGGAGGGAAAGTTGGCGGCAAGGGCAAGGGCAAGGGC
AGGGGCAAGGGCAAGGG
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