mRNA_Ecto-sp13_S_contig69994.18023.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69994.18023.1
Unique NamemRNA_Ecto-sp13_S_contig69994.18023.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69994.18023.1 vs. uniprot
Match: A0A6H5KXX9_9PHAE (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.210e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:   43 DLVVPRLKKVAGKTRLLVMLRDPVKRAYSHYQ 138
            DLV+PRLKKVAGKTRLLVMLRDPVKRAYSHYQ
Sbjct:  265 DLVIPRLKKVAGKTRLLVMLRDPVKRAYSHYQ 296
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BLAST of mRNA_Ecto-sp13_S_contig69994.18023.1 vs. uniprot
Match: D8LJQ2_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ2_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.790e-10
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:   43 DLVVPRLKKVAGKTRLLVMLRDPVKRAYSHY 135
            DLV+PRLK VAGKTRLLVMLRDPVKRAYSHY
Sbjct:  350 DLVIPRLKNVAGKTRLLVMLRDPVKRAYSHY 380
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BLAST of mRNA_Ecto-sp13_S_contig69994.18023.1 vs. uniprot
Match: A0A835YZ41_9STRA (Sulfotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ41_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.300e-6
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   43 DLVVPRLKKVAGKTRLLVMLRDPVKRAYSHYQ 138
            D+V+PRL+ VA   +L+VMLRDPVKRAYSHYQ
Sbjct:  373 DVVIPRLQAVAPHAKLIVMLRDPVKRAYSHYQ 404
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69994.18023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KXX9_9PHAE1.210e-1196.88Asp_Arg_Hydrox domain-containing protein n=1 Tax=E... [more]
D8LJQ2_ECTSI2.790e-1093.55Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A835YZ41_9STRA1.300e-671.88Sulfotransferase n=1 Tax=Tribonema minus TaxID=303... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69994contigEcto-sp13_S_contig69994:11..148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score62.8
Seed ortholog evalue4.9e-08
Seed eggNOG ortholog2880.D8LJQ2
Model size138
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity
EggNOG OGs2CN6N@1,2QU6N@2759
Cds size138
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463959.1223593-CDS-Ecto-sp13_S_contig69994:10..1481681463959.1223593-CDS-Ecto-sp13_S_contig69994:10..148Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69994 11..148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69994.18023.1prot_Ecto-sp13_S_contig69994.18023.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69994 11..148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69994.18023.1

>prot_Ecto-sp13_S_contig69994.18023.1 ID=prot_Ecto-sp13_S_contig69994.18023.1|Name=mRNA_Ecto-sp13_S_contig69994.18023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
PCLWRPGVCLISYRDLVVPRLKKVAGKTRLLVMLRDPVKRAYSHYQ
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mRNA from alignment at Ecto-sp13_S_contig69994:11..148-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69994.18023.1 ID=mRNA_Ecto-sp13_S_contig69994.18023.1|Name=mRNA_Ecto-sp13_S_contig69994.18023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69994:11..148- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTGCCTTTGGCGGCCTGGGGTGTGTCTGATTTCCTACAGAGATCTGGT
CGTACCTCGATTGAAGAAGGTCGCCGGGAAGACACGCCTCCTGGTGATGC
TGAGGGACCCCGTGAAACGGGCGTACTCGCACTACCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69994:11..148-

>mRNA_Ecto-sp13_S_contig69994.18023.1 ID=mRNA_Ecto-sp13_S_contig69994.18023.1|Name=mRNA_Ecto-sp13_S_contig69994.18023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69994:11..148- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTGCCTTTGGCGGCCTGGGGTGTGTCTGATTTCCTACAGAGATCTGGT
CGTACCTCGATTGAAGAAGGTCGCCGGGAAGACACGCCTCCTGGTGATGC
TGAGGGACCCCGTGAAACGGGCGTACTCGCACTACCAG
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