mRNA_Ecto-sp13_S_contig69972.18021.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69972.18021.1
Unique NamemRNA_Ecto-sp13_S_contig69972.18021.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69972.18021.1 vs. uniprot
Match: A0A6H5KLW2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLW2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.220e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 AGVLPEPGETPTRSKTHEQNAAIKKQLEEIRSKR 102
            AGVLP+PGETPTRSKTHEQNAAIKKQLEEIRSKR
Sbjct:   63 AGVLPKPGETPTRSKTHEQNAAIKKQLEEIRSKR 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69972.18021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLW2_9PHAE1.220e-1297.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69972contigEcto-sp13_S_contig69972:600..704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score66.6
Seed ortholog evalue2.6e-09
Seed eggNOG ortholog2880.D8LBP5
Model size105
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2E32P@1,2SA7S@2759
Cds size105
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463958.9949722-CDS-Ecto-sp13_S_contig69972:599..7041681463958.9949722-CDS-Ecto-sp13_S_contig69972:599..704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69972 600..704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69972.18021.1prot_Ecto-sp13_S_contig69972.18021.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69972 600..704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69972.18021.1

>prot_Ecto-sp13_S_contig69972.18021.1 ID=prot_Ecto-sp13_S_contig69972.18021.1|Name=mRNA_Ecto-sp13_S_contig69972.18021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
AGVLPEPGETPTRSKTHEQNAAIKKQLEEIRSKR*
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mRNA from alignment at Ecto-sp13_S_contig69972:600..704-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69972.18021.1 ID=mRNA_Ecto-sp13_S_contig69972.18021.1|Name=mRNA_Ecto-sp13_S_contig69972.18021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69972:600..704- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGCGTGCTGCCGGAGCCGGGAGAGACGCCAACGAGGTCGAAGACCCA
TGAACAAAACGCCGCCATCAAGAAACAACTAGAGGAAATCAGATCGAAGA
GATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69972:600..704-

>mRNA_Ecto-sp13_S_contig69972.18021.1 ID=mRNA_Ecto-sp13_S_contig69972.18021.1|Name=mRNA_Ecto-sp13_S_contig69972.18021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69972:600..704- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGCGTGCTGCCGGAGCCGGGAGAGACGCCAACGAGGTCGAAGACCCA
TGAACAAAACGCCGCCATCAAGAAACAACTAGAGGAAATCAGATCGAAGA
GATGA
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