mRNA_Ecto-sp13_S_contig69930.18018.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69930.18018.1
Unique NamemRNA_Ecto-sp13_S_contig69930.18018.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69930.18018.1 vs. uniprot
Match: A0A7X7FSE6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7FSE6_9BACT)

HSP 1 Score: 105 bits (262), Expect = 3.760e-24
Identity = 76/216 (35.19%), Postives = 105/216 (48.61%), Query Frame = 1 
Query:   22 FYIRVLDADSGNPIEGMEFIPSLECKVNLEKHRLLLKKRTGGLDIYYQENPEAASPLLAPIKKRTKFGFGLVISDPDFFSRYDPDLNDP--PQLYFDNLDGAGALLAGATEVLSENSQVQLVDTAKIYAKTFSVATDLTVAPAPTSYSIKEKHGPATLQTVL---IDNSLGTNQVTTKLNDPIQQAASYVDASGPYLLESDSGLPATSTIYLDDQL 654
            F + V    S   + G  F PS      L  H LL + R  GL+I+Y  NP A+SPLL  I+ R +F F +  +DP F+  Y PDL     PQ+Y DNL+GAG L       L+  + VQ  D  K+    F+ A  +   PAPT   +K+K  P  +  VL   I  S G     TK++   Q A       GPYLL ++    A+  +Y+D+ L
Sbjct:   11 FRVTVRQDGSDALLPGFSFRPSAATVRRLADHALLFQGREAGLEIFYCTNPLASSPLLGRIRNRVRFTFEVHQADPSFYKTYLPDLTPATGPQIYLDNLNGAGVLPPVPLTELTAGAFVQAADMVKVRPPVFTAAIAIDGGPAPTELLVKDKFDPTRI--VLHAPITVSPGAKLGMTKIDLSAQPA-------GPYLLHTNVAGTASHALYVDEAL 217
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69930.18018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X7FSE6_9BACT3.760e-2435.19Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69930contigEcto-sp13_S_contig69930:34..687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size654
Hectar predicted targeting categoryother localisation
Exons1
Cds size654
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463958.8015933-CDS-Ecto-sp13_S_contig69930:33..6871681463958.8015933-CDS-Ecto-sp13_S_contig69930:33..687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69930 34..687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69930.18018.1prot_Ecto-sp13_S_contig69930.18018.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69930 34..687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69930.18018.1

>prot_Ecto-sp13_S_contig69930.18018.1 ID=prot_Ecto-sp13_S_contig69930.18018.1|Name=mRNA_Ecto-sp13_S_contig69930.18018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp
YTILYRFFYIRVLDADSGNPIEGMEFIPSLECKVNLEKHRLLLKKRTGGL
DIYYQENPEAASPLLAPIKKRTKFGFGLVISDPDFFSRYDPDLNDPPQLY
FDNLDGAGALLAGATEVLSENSQVQLVDTAKIYAKTFSVATDLTVAPAPT
SYSIKEKHGPATLQTVLIDNSLGTNQVTTKLNDPIQQAASYVDASGPYLL
ESDSGLPATSTIYLDDQL
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mRNA from alignment at Ecto-sp13_S_contig69930:34..687+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69930.18018.1 ID=mRNA_Ecto-sp13_S_contig69930.18018.1|Name=mRNA_Ecto-sp13_S_contig69930.18018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69930:34..687+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACACTATCTTATATCGATTTTTTTACATCCGCGTGCTTGACGCGGATAG
TGGAAACCCTATTGAGGGAATGGAGTTCATTCCCAGTTTGGAATGCAAAG
TAAATTTGGAAAAACACCGATTACTGCTGAAAAAACGAACAGGAGGGCTC
GATATTTATTATCAGGAAAATCCAGAGGCCGCCAGTCCGTTGCTGGCACC
CATCAAAAAACGCACGAAATTCGGTTTTGGTCTTGTAATCAGTGATCCGG
ACTTCTTTTCTAGATACGACCCGGATCTCAACGATCCACCACAATTGTAT
TTTGACAACTTGGACGGGGCCGGTGCCCTATTGGCCGGAGCCACCGAAGT
ATTGAGCGAGAACTCCCAAGTACAGCTAGTAGATACTGCGAAGATATACG
CAAAGACCTTTTCCGTGGCCACTGACCTTACTGTTGCACCGGCACCCACT
TCCTATTCCATAAAAGAAAAACATGGGCCAGCAACCCTTCAAACGGTACT
GATCGACAATTCCTTAGGTACGAACCAGGTGACCACAAAACTCAATGACC
CCATACAACAAGCCGCATCTTATGTCGACGCTTCGGGTCCCTACCTGTTA
GAATCGGATAGCGGCCTGCCAGCGACCAGTACCATTTATTTAGATGACCA
GTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69930:34..687+

>mRNA_Ecto-sp13_S_contig69930.18018.1 ID=mRNA_Ecto-sp13_S_contig69930.18018.1|Name=mRNA_Ecto-sp13_S_contig69930.18018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69930:34..687+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACACTATCTTATATCGATTTTTTTACATCCGCGTGCTTGACGCGGATAG
TGGAAACCCTATTGAGGGAATGGAGTTCATTCCCAGTTTGGAATGCAAAG
TAAATTTGGAAAAACACCGATTACTGCTGAAAAAACGAACAGGAGGGCTC
GATATTTATTATCAGGAAAATCCAGAGGCCGCCAGTCCGTTGCTGGCACC
CATCAAAAAACGCACGAAATTCGGTTTTGGTCTTGTAATCAGTGATCCGG
ACTTCTTTTCTAGATACGACCCGGATCTCAACGATCCACCACAATTGTAT
TTTGACAACTTGGACGGGGCCGGTGCCCTATTGGCCGGAGCCACCGAAGT
ATTGAGCGAGAACTCCCAAGTACAGCTAGTAGATACTGCGAAGATATACG
CAAAGACCTTTTCCGTGGCCACTGACCTTACTGTTGCACCGGCACCCACT
TCCTATTCCATAAAAGAAAAACATGGGCCAGCAACCCTTCAAACGGTACT
GATCGACAATTCCTTAGGTACGAACCAGGTGACCACAAAACTCAATGACC
CCATACAACAAGCCGCATCTTATGTCGACGCTTCGGGTCCCTACCTGTTA
GAATCGGATAGCGGCCTGCCAGCGACCAGTACCATTTATTTAGATGACCA
GTTG
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