prot_Ecto-sp13_S_contig6993.18016.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6993.18016.1
Unique Nameprot_Ecto-sp13_S_contig6993.18016.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length240
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6993.18016.1 vs. uniprot
Match: A0A6H5JNX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX0_9PHAE)

HSP 1 Score: 434 bits (1115), Expect = 4.300e-153
Identity = 227/239 (94.98%), Postives = 229/239 (95.82%), Query Frame = 0 
Query:    1 MARGLVNPRSSCRSCLLLVAASAATTQAFFVGGRCPLQAIQARGARTTAAPAKRQHRTRARSGLSMIIPPPELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGGLGEAESDGMY 239
            M RGLVN RSSCRSCLLLVAASAATTQAFFVGGRCPLQA   RGART AAPA+RQ RTRARSGLSMIIPP ELGYVTEAYDDFPDYVPNMGAWGESKPG+TPEAYPADSLDLD FWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPD GGLGEAESDGMY
Sbjct:    1 MTRGLVNARSSCRSCLLLVAASAATTQAFFVGGRCPLQA---RGARTAAAPAERQCRTRARSGLSMIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGSTPEAYPADSLDLDDFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDMGGLGEAESDGMY 236
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BLAST of mRNA_Ecto-sp13_S_contig6993.18016.1 vs. uniprot
Match: D7FQ37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ37_ECTSI)

HSP 1 Score: 337 bits (865), Expect = 5.880e-116
Identity = 170/174 (97.70%), Postives = 170/174 (97.70%), Query Frame = 0 
Query:   66 MIIPPPELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGGLGEAESDGMY 239
            MIIPP ELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQ ERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTG LG AESDGMY
Sbjct:    1 MIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQTERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGDLGGAESDGMY 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6993.18016.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNX0_9PHAE4.300e-15394.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ37_ECTSI5.880e-11697.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 155..175
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..239
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.599

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6993contigEcto-sp13_S_contig6993:1014..4771 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6993.18016.1mRNA_Ecto-sp13_S_contig6993.18016.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6993 550..4790 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6993.18016.1 ID=prot_Ecto-sp13_S_contig6993.18016.1|Name=mRNA_Ecto-sp13_S_contig6993.18016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MARGLVNPRSSCRSCLLLVAASAATTQAFFVGGRCPLQAIQARGARTTAA
PAKRQHRTRARSGLSMIIPPPELGYVTEAYDDFPDYVPNMGAWGESKPGN
TPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTM
LPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIE
VGVIDVPPPPVDFDDSDGYDDGYDPDTGGLGEAESDGMY*
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