mRNA_Ecto-sp13_S_contig6993.18016.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6993.18016.1
Unique NamemRNA_Ecto-sp13_S_contig6993.18016.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6993.18016.1 vs. uniprot
Match: A0A6H5JNX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX0_9PHAE)

HSP 1 Score: 433 bits (1113), Expect = 4.150e-150
Identity = 227/239 (94.98%), Postives = 229/239 (95.82%), Query Frame = 2 
Query:   20 MARGLVNPRSSCRSCLLLVAASAATTQAFFVGGRCPLQAIQARGARTTAAPAKRQHRTRARSGLSMIIPPPELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGGLGEAESDGMY 736
            M RGLVN RSSCRSCLLLVAASAATTQAFFVGGRCPLQA   RGART AAPA+RQ RTRARSGLSMIIPP ELGYVTEAYDDFPDYVPNMGAWGESKPG+TPEAYPADSLDLD FWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPD GGLGEAESDGMY
Sbjct:    1 MTRGLVNARSSCRSCLLLVAASAATTQAFFVGGRCPLQA---RGARTAAAPAERQCRTRARSGLSMIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGSTPEAYPADSLDLDDFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDMGGLGEAESDGMY 236
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BLAST of mRNA_Ecto-sp13_S_contig6993.18016.1 vs. uniprot
Match: D7FQ37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ37_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 6.080e-113
Identity = 170/174 (97.70%), Postives = 170/174 (97.70%), Query Frame = 2 
Query:  215 MIIPPPELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGGLGEAESDGMY 736
            MIIPP ELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQ ERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTG LG AESDGMY
Sbjct:    1 MIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQTERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGDLGGAESDGMY 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6993.18016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNX0_9PHAE4.150e-15094.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ37_ECTSI6.080e-11397.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6993contigEcto-sp13_S_contig6993:550..4790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1203
Hectar predicted targeting categorychloroplast
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007610.1
Cds size720
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6993.18016.1prot_Ecto-sp13_S_contig6993.18016.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6993 1014..4771 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463958.6426768-UTR-Ecto-sp13_S_contig6993:549..10131681463958.6426768-UTR-Ecto-sp13_S_contig6993:549..1013Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6993 550..1013 -
1681463958.7168107-UTR-Ecto-sp13_S_contig6993:4771..47901681463958.7168107-UTR-Ecto-sp13_S_contig6993:4771..4790Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6993 4772..4790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463958.6549087-CDS-Ecto-sp13_S_contig6993:1013..11901681463958.6549087-CDS-Ecto-sp13_S_contig6993:1013..1190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6993 1014..1190 -
1681463958.665729-CDS-Ecto-sp13_S_contig6993:2250..23541681463958.665729-CDS-Ecto-sp13_S_contig6993:2250..2354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6993 2251..2354 -
1681463958.680249-CDS-Ecto-sp13_S_contig6993:3363..34951681463958.680249-CDS-Ecto-sp13_S_contig6993:3363..3495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6993 3364..3495 -
1681463958.6910322-CDS-Ecto-sp13_S_contig6993:3887..39791681463958.6910322-CDS-Ecto-sp13_S_contig6993:3887..3979Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6993 3888..3979 -
1681463958.703611-CDS-Ecto-sp13_S_contig6993:4556..47711681463958.703611-CDS-Ecto-sp13_S_contig6993:4556..4771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6993 4557..4771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6993.18016.1

>prot_Ecto-sp13_S_contig6993.18016.1 ID=prot_Ecto-sp13_S_contig6993.18016.1|Name=mRNA_Ecto-sp13_S_contig6993.18016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MARGLVNPRSSCRSCLLLVAASAATTQAFFVGGRCPLQAIQARGARTTAA
PAKRQHRTRARSGLSMIIPPPELGYVTEAYDDFPDYVPNMGAWGESKPGN
TPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTM
LPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIE
VGVIDVPPPPVDFDDSDGYDDGYDPDTGGLGEAESDGMY*
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mRNA from alignment at Ecto-sp13_S_contig6993:550..4790-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6993.18016.1 ID=mRNA_Ecto-sp13_S_contig6993.18016.1|Name=mRNA_Ecto-sp13_S_contig6993.18016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4241bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6993:550..4790- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCTAGGCAAGAGGCAGCATGGCCAGGGGCTTGGTGAACCCGAGGTCGT
CATGTCGGAGTTGCCTCCTGCTGGTGGCGGCTTCCGCAGCAACAACGCAG
GCCTTCTTTGTGGGGGGGCGGTGTCCTCTACAAGCGATACAAGCGAGAGG
AGCGAGAACAACAGCAGCACCCGCCAAACGACAGCACAGAACAAGAGCGC
GATCGGGGCTTTCAATGATCATCCCACCCCCAGAGTGAGTTGAAGCGTCC
TCCACGCACTGGTTTGGTTGTGGTTGAAGGTTGTTGAGCTGGTGTACGCG
GACCGTGTTGATGGCCGCGAGGCAAACTGATGGCACGATACCACTCTCAA
AACATGAACACACGCCGTATGCTGCATAGTGCGGTGCTCCTTGCCAAGGT
GAACAAGCGTTGCGCACAACCACTTCATAAACTGCAAGCTTTGGAAGAAC
GTCCACAGACATTGCCTTTCTACTGCAAATGACGACTCTTACAACAGGTC
TGTGGGTTGTTACAGTAGCTGCACCATGGGATCGATACTTGTACTCAGCA
GTCTATTTCTGCCTGTGTAAGCTGGTGGGAAGCAAGAAGCAAACGCCAGC
CTTTCTATGCATGCAACTGTAAATCTAAAACGCACTTTTGAATGCGCATG
CACTGCTGTAAAACTGGTATCGATATAGACTACAAGGTCCCAAGTTTCAT
TTTATGTGCTACACGCAGTAACTTCGAACACCAGCAGTCCTTGAACACGT
TGTTTGCTCCCCTCCTCACGATTTCGCTTCACCGTAACTCAACACGCCAC
GCGGATGCCAGGTTGGGGTACGTTACAGAGGCCTACGACGACTTTCCAGA
CTATGTTCCCAACATGGGTGCTTGGGGAGAGTCAAAGCCGGGAAACACTC
CGGGTGAGAGGCAGGGAGAGAGAGAAGGGGGGACAGCCATGGAACCGGAA
TGGACCGGAGGGGGGAGGAGGGGGAGGAGAGAGAAGCAGAGAGAGTTGGG
GATTAAGAGAGAGGGAGGGAGGCAGGTGTCGAGGACGTTGTTGTGGTTTC
AGGACGGCGTCTAGTACAGAGGCGGCTTGATGTTTGTTTAAGGAGCGCAG
GAGTCGCTCGCATACAAAAGCCCGCCGACATTCCTTGAATCGGAGCTGGA
GACTAGGCAGCACACCAAAGAGTGTTTCATTGTTTTAAGTGTCAAATGCA
CGACTGGGTTGACCACCAAGAGCTGTCCTGAAATACCCACCGTACACCGG
TGAAAAAAACGATGCTGACTTTGAGATGTGTCCCGATCGTTTCAGAGGCT
TACCCGGCGGACTCGCTGGATCTGGACGCCTTTTGGAACGGAGGGGCGGA
GGCGGTGGACTTTCACGACATCCCGGTGGTCGACCGGCCTGTCTTTGTGG
AGATGAAGCAGTTTATCGACAATGAAGGTCATACATCTTTTTCGCTCCGA
TTTTCGCACAATTGGCCCAGTCGTTTGGCAAAGGACTAGCCTGAGTTGTT
CGTGCTTTTTTAGGCCGATTCGATTCCATTTTGGTCGTGAGTGTCCCTGT
ATTCCCGATAGGATGATGAAAGTCATCGCGAAGTACCCAGTCCCTCCGCA
AAAAAAAAAAACACAAATTGTTTGTCAGCCAATAGTCGAGGGGCTACAGT
CGCTCCGAAAAATCTGAGCTCCTTGCCGGACAAAGAGTGACTTGACTTGA
GTATAAAAAGTGTCCGCAAAACACGCGGGGACACTTTGAATACTGACGCC
AAGTCAGCAAAGTTTCCCAGTACCAGGCGATGTACAGCAGTGTTACGACC
CAGGGGGCACCCGGGTTGGGATATTGCGTACAGCAAGTTGGAGGCCCAGA
AGCGGCATCACACAGCGTATCACACAGCGTACCACCTCAGCCAAGCATGG
TAGACCAAGGGTTCTCACGTGCGTTGCACACAGCGGACCCTAAGGGTGAC
TACACTGCGGTAAATAGGCACTTGAGTGCTGTGCCTCTCAAGTGTCCCCA
TTTCGGCTTCGACTACTAGGAGGGTTGAAACGTTCTGGAAATGGATGGAT
GTCTTAGTCTTCGAACTGAGTCAGACGTCAGTGCACCAGACTGCATGGCA
CCTCGAACGTAGGACTTGTGTGGACTTGTGTCAAAGACATGCAACTGAGG
GTGACTTTCAAGCTTGGCTGACCGCCAGGAGCACAAGGACGAGGTCATAC
GCGCGTAGTGGGTGTTGAACGGCGATTCCAACCTAACAAGCAGCGATGAT
CGGTCCGGCAGCAGCACCGTCGTGCTCGGAGGGTCCGTTTAGCTTGCACA
CTATTTGCTGGAGCATGCGTCACAGACATACTCGGTTCCGGAGCCTCCGT
GAGCCGAGGTCACTGCTTGCTGTGTAGACTCGAGTCCGACCCATTCAGCG
CTTCGATGTTCGCTGCCACCTTTCGCTGCGTGCTAGGGCTAACAATGCTC
CCATCGGAGACCGAGCTATTGGAGAGGGATATCCAGAACGAGCGGAGAGC
ACGCGCAAAGGCCAGGAAGGAGCGCTTCGCGGACGAACCGGTGAATACGA
TTGGGGGAGTTGTATGCGCTACCTGCTGCTGGCGTCTGGGGGCGCAAGAG
CGCCGTAAGACAATCGACTGTTTTTTTTTTCCCCTTCTGTCTACAGGTTG
GGTAGAATATTGATTTCGATGTTATTGCAGTATCTTCACTGATTGGAACA
TGCAGTTTATCCACGCATTTCGGGAGAAAGCGAAAAAACTCGTGTTTCAA
ACCGCGTGTGGTCGGGTCGCTCCCTCGTACGCGACACAGCATGTTTCCCA
TGTACACGGGGCGATCTCGCGTAGCCGTGCAACATCACAACACCACCGTT
GGAGGCCTGGCAAAAAGCAAACAGGATGTTTTTGACAGCGGTCTTTCTTT
CGGCGTCAAAAGTGATGACGTCATGGCCAGGGTTTACGCAATCCACCGCC
GATGTTTCGCGAAACGCTCGCTTTCAACGTTGAGAATGTCTGCTTCCCGC
TTCTATCAATTTTGCGGAGCGCAAAGAGCTCTCTGCGTGAACCCTTTGGT
TTGGTGGTCGGTGGCGTTCTGCACGGTACGCGATGTTGACAGTTATTTGG
AAGATCTATTGAACAGGAGCACATGCCTCTTCGGTGCCATGCTTGCCAGT
CGCTGCTTCTTGCTCTCGGAGCTGTTGAGTATGGTCTGCGAACGATTTCA
TTCAGCACCCGATTCATGCCTACCTCAGACACAACAAAAGTGGTGCGACG
TGTACACAGTGTTGGACACGCCGGCATTAGTACGCTCTCATGCAAATAGG
TCTGCTGAATGTTGTAGCTCCCGTTCAGACAACCCGCCCTCGGCCGTTTC
TTTTCCCTGGCCCATGTTTCATTCTCTCGGCCCGTGTTTCCATGATTCTT
GCATTATTTGTCACCGATTTGCTTCTACGGCGTCAAAAATAAACACGAAA
TCTACCACCCGTCGTGCTTTCGTACACGCCACTAGTGAGATATATTGTTT
CGATCACGAAGTCGGCCATCCTCAGACACCGGGTTTTTCTTTGAAGTAAA
CCACTCCCTACCCACAATTTGAAACCGGTCGGGTCTTACATGCCGGACAG
GATGAGGATCTGGTGGACGACACCCTGGACGACTTACCGCTCGACGACGA
GATCGAGGTCGGCGTGATCGACGTCCCGCCGCCGCCGGTAGATTTCGACG
ACAGTGACGGTTACGACGACGGGTACGACCCGGACACGGGGGGCCTCGGA
GAGGCAGAGAGCGATGGCATGTACTAAATATCCAAAGACGCTTCGGTGTG
TGTGTATCCCCTCCCCCAGCACCCTTGAGGGTAACTGATGAGAGCCTTGA
TTTACAAACCAAGCGTGTCATGGCTGCAGGAAAGGGAGCGTTCGTGTAGC
AACCAAACGTTATATTGCTGCAGTAAAGAGCTGATTCAATGATGTTGCTG
CTCCCGGTGCTCGTGAGTCTATCTGGTGAAGACGTTCAGCCGAGGGCAGC
AGGTTTAGGCGATACCGGAATTGTTGCTTGTGGTTGTTGGTAGACCAGCG
GCGGAAAGTATCGGAAGACAAGTGTGGTTCCTCATCTCTGCGACCACTGA
CGGTAGAGCGAAACAGGCAGTACCAGCAATCAGCGTGAGGCAGTATCTGT
TGTCATGCCCAACAAGTGTTGTCTGAATTGATGGAAGAGTTTTGTTTCTT
TTGGCGATTGCCTCAGTTAAAGCCCACCCTTTCAAAGAACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6993:550..4790-

>mRNA_Ecto-sp13_S_contig6993.18016.1 ID=mRNA_Ecto-sp13_S_contig6993.18016.1|Name=mRNA_Ecto-sp13_S_contig6993.18016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6993:550..4790- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGGGGCTTGGTGAACCCGAGGTCGTCATGTCGGAGTTGCCTCCT
GCTGGTGGCGGCTTCCGCAGCAACAACGCAGGCCTTCTTTGTGGGGGGGC
GGTGTCCTCTACAAGCGATACAAGCGAGAGGAGCGAGAACAACAGCAGCA
CCCGCCAAACGACAGCACAGAACAAGAGCGCGATCGGGGCTTTCAATGAT
CATCCCACCCCCAGAGTTGGGGTACGTTACAGAGGCCTACGACGACTTTC
CAGACTATGTTCCCAACATGGGTGCTTGGGGAGAGTCAAAGCCGGGAAAC
ACTCCGGAGGCTTACCCGGCGGACTCGCTGGATCTGGACGCCTTTTGGAA
CGGAGGGGCGGAGGCGGTGGACTTTCACGACATCCCGGTGGTCGACCGGC
CTGTCTTTGTGGAGATGAAGCAGTTTATCGACAATGAAGGGCTAACAATG
CTCCCATCGGAGACCGAGCTATTGGAGAGGGATATCCAGAACGAGCGGAG
AGCACGCGCAAAGGCCAGGAAGGAGCGCTTCGCGGACGAACCGGATGAGG
ATCTGGTGGACGACACCCTGGACGACTTACCGCTCGACGACGAGATCGAG
GTCGGCGTGATCGACGTCCCGCCGCCGCCGGTAGATTTCGACGACAGTGA
CGGTTACGACGACGGGTACGACCCGGACACGGGGGGCCTCGGAGAGGCAG
AGAGCGATGGCATGTACTAA
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