mRNA_Ecto-sp13_S_contig6991.18011.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6991.18011.1
Unique NamemRNA_Ecto-sp13_S_contig6991.18011.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6991.18011.1 vs. uniprot
Match: A0A6H5L6F7_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6F7_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 1.930e-84
Identity = 139/146 (95.21%), Postives = 140/146 (95.89%), Query Frame = 1
Query:   16 MDAAQLVQVEALCETLYNSTDEAARSHAQNQLLSLQTSAERIPQCQYILDHSENAYALLLASSSLTRLISSHWNNFTTPQRVEIRNYILNYLGSVGPGLTDYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFLQVRTFYLVYG 453
            MDAAQLVQVEALCETLYNSTDEAARSHAQNQLLSLQTSAERIPQCQYILDHSENAYALLLASSSLTRLISSHWNNFTTPQRVEIRNYILNYLGSVGPGLTDYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFLQ    + V G
Sbjct:    1 MDAAQLVQVEALCETLYNSTDEAARSHAQNQLLSLQTSAERIPQCQYILDHSENAYALLLASSSLTRLISSHWNNFTTPQRVEIRNYILNYLGSVGPGLTDYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFLQATNDHYVIG 146          
BLAST of mRNA_Ecto-sp13_S_contig6991.18011.1 vs. uniprot
Match: A0A2D4BKK5_PYTIN (Exportin-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKK5_PYTIN)

HSP 1 Score: 196 bits (499), Expect = 2.680e-55
Identity = 91/151 (60.26%), Postives = 116/151 (76.82%), Query Frame = 1
Query:    1 PPPLKMDAAQLVQVEALCETLYNSTDEAARSHAQNQLLSLQTSAERIPQCQYILDHSENAYALLLASSSLTRLISSHWNNFTTPQRVEIRNYILNYLGSVGPGLTDYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFLQVRTFYLVYG 453
            P P  MDAAQL  +E LC  LY S  E+ R+HAQ  +L LQ+SAE IPQCQY+LD+S + YALL+ASSSLT+LI++HWNNFTTPQR++IRNY+L YL   GP L  +V TSL+Q+LCR+TK GWFDD++HRE+VD V +FLQ    + + G
Sbjct:  921 PTPRSMDAAQLQTLETLCSALYESVHESERAHAQQAVLVLQSSAEYIPQCQYVLDNSTSPYALLVASSSLTKLITTHWNNFTTPQRIDIRNYVLAYLAQKGPTLQKFVTTSLVQMLCRLTKFGWFDDEQHREIVDEVTKFLQATVDHCIIG 1071          
BLAST of mRNA_Ecto-sp13_S_contig6991.18011.1 vs. uniprot
Match: A0A7S1USY4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USY4_9STRA)

HSP 1 Score: 179 bits (454), Expect = 3.830e-55
Identity = 92/144 (63.89%), Postives = 113/144 (78.47%), Query Frame = 1
Query:   16 MDAAQLVQVEALCETLYN---STDE----AARSHAQNQLLSLQTSAERIPQCQYILDHSENAYALLLASSSLTRLISSHWNNFTTPQRVEIRNYILNYLGSVGPGLTDYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFLQ 426
            MDA+QL QVEALCETLY+   ST E     +R+ AQ +LLSLQ+SAE IPQCQYILD S + YA L+AS+SLT LI+S+WN+FT  QR++IRNY+L YL + GPGL D+V  SLI+L+CRITKLGWFDD  HRE+ D V +FLQ
Sbjct:    1 MDASQLAQVEALCETLYSGAPSTSEDGKPISRADAQARLLSLQSSAEYIPQCQYILDQSNSQYARLVASNSLTELITSYWNSFTVAQRIDIRNYVLGYLANRGPGLQDFVVVSLIKLVCRITKLGWFDDPTHRELADDVTKFLQ 144          
BLAST of mRNA_Ecto-sp13_S_contig6991.18011.1 vs. uniprot
Match: A0A835YUW2_9STRA (RAN binding protein 16-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW2_9STRA)

HSP 1 Score: 195 bits (496), Expect = 6.230e-55
Identity = 91/138 (65.94%), Postives = 115/138 (83.33%), Query Frame = 1
Query:   10 LKMDAAQLVQVEALCETLYNSTDEAARSHAQNQLLSLQTSAERIPQCQYILDHSENAYALLLASSSLTRLISSHWNNFTTPQRVEIRNYILNYLGSVGPGLTDYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFL 423
            + MDA QL QVE+LC+ LYN+ +EA R+ AQ QL+SLQ+S + IPQCQYILD+S+N YA LLAS+SLT+LI+ HWN+F+ PQRV+IRNYIL+YL S GP L DYV T+L+QLLCRITKLGWFDD  HR++VD  ++FL
Sbjct:    1 MAMDAQQLAQVESLCDALYNAANEAQRASAQQQLMSLQSSVDYIPQCQYILDNSQNPYARLLASNSLTQLITQHWNSFSVPQRVDIRNYILSYLASQGPSLKDYVVTALVQLLCRITKLGWFDDAAHRDLVDETLKFL 138          
BLAST of mRNA_Ecto-sp13_S_contig6991.18011.1 vs. uniprot
Match: A0A8K1CLU5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLU5_PYTOL)

HSP 1 Score: 191 bits (486), Expect = 1.380e-53
Identity = 87/146 (59.59%), Postives = 113/146 (77.40%), Query Frame = 1
Query:   16 MDAAQLVQVEALCETLYNSTDEAARSHAQNQLLSLQTSAERIPQCQYILDHSENAYALLLASSSLTRLISSHWNNFTTPQRVEIRNYILNYLGSVGPGLTDYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFLQVRTFYLVYG 453
            MDA+QL  +E LC+ +Y S +E+ R+HAQ  +L LQ+SAE IPQCQY+LDHS + YALL+AS+SLT+LI++HWNNFT PQRV+IRNY+L YL   GP L  YV TSLIQ++CR+TK GWFDD+ HRE+V  V +FLQ    + + G
Sbjct:    1 MDASQLQNLEVLCKAIYESVNESERTHAQQSVLILQSSAEYIPQCQYVLDHSASPYALLVASTSLTKLITTHWNNFTAPQRVDIRNYVLGYLAEKGPKLEKYVTTSLIQMVCRLTKFGWFDDEHHREIVSEVTKFLQATVDHCLIG 146          
BLAST of mRNA_Ecto-sp13_S_contig6991.18011.1 vs. uniprot
Match: D0P208_PHYIT (Exportin-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P208_PHYIT)

HSP 1 Score: 189 bits (480), Expect = 1.520e-53
Identity = 89/146 (60.96%), Postives = 113/146 (77.40%), Query Frame = 1
Query:   16 MDAAQLVQVEALCETLYNSTDEAARSHAQNQLLSLQTSAERIPQCQYILDHSENAYALLLASSSLTRLISSHWNNFTTPQRVEIRNYILNYLGSVGPGLTDYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFLQVRTFYLVYG 453
            MDA QL ++E LC  LY S +E  R+HAQ  +L LQ+SAE IPQCQY+LD+S + YALL+AS+SLT+LI+SHWNNFTTPQRV+IRNY+L YL   GP L  +V TSLIQ++CR+TK GWFDD++HRE+V  V +FLQ    + V G
Sbjct:    1 MDANQLRELETLCRVLYESGNEVERAHAQQAVLILQSSAEYIPQCQYVLDNSSSPYALLVASTSLTKLITSHWNNFTTPQRVDIRNYVLGYLAQKGPTLEKFVTTSLIQMVCRLTKYGWFDDEQHREIVAEVTKFLQATVDHCVIG 146          
BLAST of mRNA_Ecto-sp13_S_contig6991.18011.1 vs. uniprot
Match: H3GGA7_PHYRM (Importin N-terminal domain-containing protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GGA7_PHYRM)

HSP 1 Score: 189 bits (481), Expect = 6.580e-53
Identity = 89/146 (60.96%), Postives = 114/146 (78.08%), Query Frame = 1
Query:   16 MDAAQLVQVEALCETLYNSTDEAARSHAQNQLLSLQTSAERIPQCQYILDHSENAYALLLASSSLTRLISSHWNNFTTPQRVEIRNYILNYLGSVGPGLTDYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFLQVRTFYLVYG 453
            MDA QL ++E LC  LY S +E+ R+HAQ  +L LQ+SAE IPQCQY+LD+S + YALL+AS+SLT+LI+SHWNNFTTPQRV+IRNY+L YL   GP L  +V TSLIQ++CR+TK GWFDD++HRE+V  V +FLQ    + V G
Sbjct:    1 MDANQLRELETLCRVLYESGNESERAHAQQAVLILQSSAEYIPQCQYVLDNSSSPYALLVASTSLTKLITSHWNNFTTPQRVDIRNYVLGYLAQKGPTLEKFVTTSLIQMVCRLTKYGWFDDEQHREIVAEVTKFLQATVDHCVIG 146          
BLAST of mRNA_Ecto-sp13_S_contig6991.18011.1 vs. uniprot
Match: A0A662YJ06_9STRA (Importin N-terminal domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJ06_9STRA)

HSP 1 Score: 189 bits (481), Expect = 6.600e-53
Identity = 91/150 (60.67%), Postives = 116/150 (77.33%), Query Frame = 1
Query:   16 MDAAQLVQVEALCETLYNSTDEAARSHAQNQLLSLQTSAERIPQCQYILDHSENAYALLLASSSLTRLISSHWNNFTTPQRVEIR----NYILNYLGSVGPGLTDYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFLQVRTFYLVYG 453
            MDA QL Q+E LC+ LY ST+E+ R+HAQ  +L LQ+SAE IPQCQY+LD+S + YALL+AS+SLT+LI+SHWNNFTTPQRV+IR    NY+L YL   GP L  +V TSLIQ++CR+TK GWFDD++HRE+V  V +FLQ    + V G
Sbjct:    1 MDAGQLQQLETLCKVLYESTNESERAHAQQAVLILQSSAEYIPQCQYVLDNSTSPYALLVASTSLTKLITSHWNNFTTPQRVDIRTSIGNYVLGYLAQKGPTLEKFVTTSLIQMVCRLTKYGWFDDEQHREIVSEVTKFLQATVDHCVIG 150          
BLAST of mRNA_Ecto-sp13_S_contig6991.18011.1 vs. uniprot
Match: A0A484EDS8_BRELC (Importin N-terminal domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDS8_BRELC)

HSP 1 Score: 188 bits (478), Expect = 1.670e-52
Identity = 88/146 (60.27%), Postives = 113/146 (77.40%), Query Frame = 1
Query:   16 MDAAQLVQVEALCETLYNSTDEAARSHAQNQLLSLQTSAERIPQCQYILDHSENAYALLLASSSLTRLISSHWNNFTTPQRVEIRNYILNYLGSVGPGLTDYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFLQVRTFYLVYG 453
            MDA QL ++E LC  LY ST+E  R+HAQ  +L LQ+SAE IPQCQY+LD+S + YALL+AS+SLT+LI++HWNNFT PQRV+IRNY+L YL   GP L  +V TSLIQ++CR+TK GWFDD++HRE+V  V +FLQ    + V G
Sbjct:    1 MDANQLRELETLCRVLYESTNEVERAHAQQAVLILQSSAEYIPQCQYVLDNSSSPYALLVASNSLTKLITTHWNNFTPPQRVDIRNYVLGYLAQHGPTLEKFVTTSLIQMVCRLTKYGWFDDEQHREIVTEVTKFLQATVDHCVIG 146          
BLAST of mRNA_Ecto-sp13_S_contig6991.18011.1 vs. uniprot
Match: A0A5D6XJM5_9STRA (Importin N-terminal domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJM5_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.090e-51
Identity = 87/146 (59.59%), Postives = 111/146 (76.03%), Query Frame = 1
Query:   16 MDAAQLVQVEALCETLYNSTDEAARSHAQNQLLSLQTSAERIPQCQYILDHSENAYALLLASSSLTRLISSHWNNFTTPQRVEIRNYILNYLGSVGPGLTDYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFLQVRTFYLVYG 453
            MDA QL  +E LC+ LY S  EA R+ AQ  +L LQ+SAE IPQCQY+LDHS + YALL+AS+SLT+LI++HWNNFT PQRV+IRNY+L YL   GP L  +V TSLIQ++CR+TK GWFDD++HRE+V  V +FLQ    + + G
Sbjct:    1 MDATQLRNLETLCKVLYESAVEAERARAQQSVLVLQSSAEYIPQCQYVLDHSASPYALLVASNSLTKLITTHWNNFTPPQRVDIRNYVLGYLAQKGPTLEKFVTTSLIQMVCRLTKFGWFDDEQHREIVGEVTKFLQATVDHCLIG 146          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6991.18011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6F7_9PHAE1.930e-8495.21Importin N-terminal domain-containing protein n=2 ... [more]
A0A2D4BKK5_PYTIN2.680e-5560.26Exportin-like protein n=1 Tax=Pythium insidiosum T... [more]
A0A7S1USY4_9STRA3.830e-5563.89Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A835YUW2_9STRA6.230e-5565.94RAN binding protein 16-like protein n=1 Tax=Tribon... [more]
A0A8K1CLU5_PYTOL1.380e-5359.59Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0P208_PHYIT1.520e-5360.96Exportin-like protein n=1 Tax=Phytophthora infesta... [more]
H3GGA7_PHYRM6.580e-5360.96Importin N-terminal domain-containing protein n=22... [more]
A0A662YJ06_9STRA6.600e-5360.67Importin N-terminal domain-containing protein n=2 ... [more]
A0A484EDS8_BRELC1.670e-5260.27Importin N-terminal domain-containing protein n=1 ... [more]
A0A5D6XJM5_9STRA1.090e-5159.59Importin N-terminal domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6991contigEcto-sp13_S_contig6991:920..1384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score280.4
Seed ortholog evalue4.9e-73
Seed eggNOG ortholog2880.D7G3N6
Preferred nameXPO7
Model size465
KEGG koko:K18460
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0012505,GO:0015031,GO:0015833,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0031267,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051020,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
Exons1
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsKOG1410@1,KOG1410@2759
Ec32 ortholog descriptionRAN binding protein 16-like, protein transporter
Ec32 orthologEc-00_006640.1
Cds size450
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463958.379008-CDS-Ecto-sp13_S_contig6991:919..13691681463958.379008-CDS-Ecto-sp13_S_contig6991:919..1369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6991 920..1369 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463958.3927677-UTR-Ecto-sp13_S_contig6991:1369..13841681463958.3927677-UTR-Ecto-sp13_S_contig6991:1369..1384Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6991 1370..1384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6991.18011.1prot_Ecto-sp13_S_contig6991.18011.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6991 920..1369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6991.18011.1

>prot_Ecto-sp13_S_contig6991.18011.1 ID=prot_Ecto-sp13_S_contig6991.18011.1|Name=mRNA_Ecto-sp13_S_contig6991.18011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp
MDAAQLVQVEALCETLYNSTDEAARSHAQNQLLSLQTSAERIPQCQYILD
HSENAYALLLASSSLTRLISSHWNNFTTPQRVEIRNYILNYLGSVGPGLT
DYVRTSLIQLLCRITKLGWFDDQRHREVVDAVMRFLQVRTFYLVYGTTV*
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mRNA from alignment at Ecto-sp13_S_contig6991:920..1384-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6991.18011.1 ID=mRNA_Ecto-sp13_S_contig6991.18011.1|Name=mRNA_Ecto-sp13_S_contig6991.18011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6991:920..1384- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCCACCTCTGAAGATGGACGCGGCCCAGCTGGTCCAGGTGGAGGCGCT GTGCGAGACTCTTTACAACTCCACGGACGAGGCGGCGCGCAGCCACGCTC AGAACCAGCTCCTCAGCCTGCAGACCTCTGCGGAGCGGATCCCGCAATGC CAGTACATCCTCGACCATTCGGAGAACGCCTACGCCCTCCTGCTGGCCTC GAGCAGCCTCACGAGGCTCATCTCCAGCCACTGGAACAACTTCACGACCC CGCAGCGGGTGGAGATCCGCAACTACATCCTCAACTACCTGGGCAGCGTC GGGCCGGGCCTGACGGACTACGTGAGGACGAGCCTGATCCAGCTGCTGTG CCGGATCACCAAGCTGGGGTGGTTTGACGACCAGAGACACAGGGAGGTTG TCGACGCAGTGATGAGATTTTTGCAGGTGCGAACCTTCTATTTAGTATAC GGTACAACAGTATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6991:920..1384-

>mRNA_Ecto-sp13_S_contig6991.18011.1 ID=mRNA_Ecto-sp13_S_contig6991.18011.1|Name=mRNA_Ecto-sp13_S_contig6991.18011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6991:920..1384- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCGGCCCAGCTGGTCCAGGTGGAGGCGCTGTGCGAGACTCTTTA
CAACTCCACGGACGAGGCGGCGCGCAGCCACGCTCAGAACCAGCTCCTCA
GCCTGCAGACCTCTGCGGAGCGGATCCCGCAATGCCAGTACATCCTCGAC
CATTCGGAGAACGCCTACGCCCTCCTGCTGGCCTCGAGCAGCCTCACGAG
GCTCATCTCCAGCCACTGGAACAACTTCACGACCCCGCAGCGGGTGGAGA
TCCGCAACTACATCCTCAACTACCTGGGCAGCGTCGGGCCGGGCCTGACG
GACTACGTGAGGACGAGCCTGATCCAGCTGCTGTGCCGGATCACCAAGCT
GGGGTGGTTTGACGACCAGAGACACAGGGAGGTTGTCGACGCAGTGATGA
GATTTTTGCAGGTGCGAACCTTCTATTTAGTATACGGTACAACAGTATAG
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