mRNA_Ecto-sp13_S_contig699.18008.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig699.18008.1
Unique NamemRNA_Ecto-sp13_S_contig699.18008.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig699.18008.1 vs. uniprot
Match: A0A6H5K7G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G3_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 8.150e-44
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 APAAGNDVVTLGQLAEAVELLKEVHSQYDELHREHDAKLGRFQRAVDRITRKLAAVSDDLVPQDELREILALHDELLRERSADNK 255
            APAAGNDVVTLGQLAEAVE LKEVHS+YDELHREHDAKLGRFQRAVDRITRKLAAVS+DLVPQDELRE+LALHDELLRERSADN+
Sbjct:  194 APAAGNDVVTLGQLAEAVEPLKEVHSKYDELHREHDAKLGRFQRAVDRITRKLAAVSNDLVPQDELREMLALHDELLRERSADNR 278
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BLAST of mRNA_Ecto-sp13_S_contig699.18008.1 vs. uniprot
Match: A0A6H5KC16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.250e-42
Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:    1 APAAGNDVVTLGQLAEAVELLKEVHSQYDELHREHDAKLGRFQRAVDRITRKLAAVSDDLVPQDELREILALHDELLRERSADNK 255
            APAA NDVVTLGQLAEAVELLK+ HSQY+ELHREHDAKLGRFQRAVDRITRKLAAVSDDLVPQDELREILALHDELLRERSADN+
Sbjct:  308 APAADNDVVTLGQLAEAVELLKDEHSQYNELHREHDAKLGRFQRAVDRITRKLAAVSDDLVPQDELREILALHDELLRERSADNR 392
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BLAST of mRNA_Ecto-sp13_S_contig699.18008.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 5.480e-37
Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = 1 
Query:    1 APAAGNDVVTLGQLAEAVELLKEVHSQYDELHREHDAKLGRFQRAVDRITRKLAAVSDDLVPQDELREILALHDELLRERSADNK 255
            APAAGNDVVTLGQLAEAVELLKEVHS+ DELHREHDAKL RFQ AVDRITRKLAAVS+DLVPQ+ELREILALHDELLRERSA N+
Sbjct:  877 APAAGNDVVTLGQLAEAVELLKEVHSKNDELHREHDAKLTRFQGAVDRITRKLAAVSNDLVPQNELREILALHDELLRERSAINR 961
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BLAST of mRNA_Ecto-sp13_S_contig699.18008.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 3.540e-36
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 APAAGNDVVTLGQLAEAVELLKEVHSQYDELHREHDAKLGRFQRAVDRITRKLAAVSDDLVPQDELREILALHDELLRERSADNK 255
            APAAGNDVVTLGQL EAVELLKEVHS+YDELHREHDAKL RFQRAVDRITRK    S+DLVPQ+ELREILALHDELLRERSA N+
Sbjct:  900 APAAGNDVVTLGQLTEAVELLKEVHSKYDELHREHDAKLSRFQRAVDRITRKCTLESNDLVPQNELREILALHDELLRERSAINR 984
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BLAST of mRNA_Ecto-sp13_S_contig699.18008.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 5.760e-30
Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 1 
Query:    1 APAAGNDVVTLGQLAEAVELLKEVHSQYDELHREHDAKLGRFQRAVDRITRKLAAVSDDLVPQDELREILALHDELLRERSADNK 255
            APAAGNDVVTLGQLAEAVELLKEV S++DELHREHDA L R QRAV +ITRK   +SD LVPQDELRE LALHDELLRE  A N+
Sbjct: 1109 APAAGNDVVTLGQLAEAVELLKEVLSKHDELHREHDATLSRVQRAVCKITRKSETMSDGLVPQDELRETLALHDELLRELGAKNR 1193
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BLAST of mRNA_Ecto-sp13_S_contig699.18008.1 vs. uniprot
Match: A0A6H5JHX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.110e-20
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 APAAGNDVVTLGQLAEAVELLKEVHSQYDELHREHDAKLGRFQRAVDRITRKLAAVS 171
            APAA NDVVTLGQ+AEAVELLKEVH +YDELHREHDAKL RFQR +D+I RK  + S
Sbjct:   15 APAASNDVVTLGQVAEAVELLKEVHCKYDELHREHDAKLSRFQRTIDKIGRKCTSES 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig699.18008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K7G3_9PHAE8.150e-4494.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC16_9PHAE2.250e-4294.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA2_ECTSI5.480e-3790.59Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FUA1_ECTSI3.540e-3687.06Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FUA0_ECTSI5.760e-3078.82Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5JHX7_9PHAE1.110e-2077.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig699contigEcto-sp13_S_contig699:11811..12766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score146.0
Seed ortholog evalue8.2e-33
Seed eggNOG ortholog2880.D7FUA2
Model size259
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons2
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size258
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463958.233218-CDS-Ecto-sp13_S_contig699:11810..119671681463958.233218-CDS-Ecto-sp13_S_contig699:11810..11967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig699 11811..11967 +
1681463958.2444668-CDS-Ecto-sp13_S_contig699:12665..127661681463958.2444668-CDS-Ecto-sp13_S_contig699:12665..12766Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig699 12666..12766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig699.18008.1prot_Ecto-sp13_S_contig699.18008.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig699 11811..12766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig699.18008.1

>prot_Ecto-sp13_S_contig699.18008.1 ID=prot_Ecto-sp13_S_contig699.18008.1|Name=mRNA_Ecto-sp13_S_contig699.18008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
APAAGNDVVTLGQLAEAVELLKEVHSQYDELHREHDAKLGRFQRAVDRIT
RKLAAVSDDLVPQDELREILALHDELLRERSADNK*
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mRNA from alignment at Ecto-sp13_S_contig699:11811..12766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig699.18008.1 ID=mRNA_Ecto-sp13_S_contig699.18008.1|Name=mRNA_Ecto-sp13_S_contig699.18008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=956bp|location=Sequence derived from alignment at Ecto-sp13_S_contig699:11811..12766+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCGGCTGCGGGCAATGATGTGGTGACCCTGGGGCAGCTGGCAGAGGC
CGTGGAACTCCTTAAGGAAGTGCATAGCCAGTACGATGAGCTGCATCGCG
AGCATGATGCCAAGCTGGGCCGTTTTCAGAGGGCGGTTGACAGGATCACC
CGCAAATGTCCGTCAGAATCGGGTTCACGACCACTAGATATGCCTCTCTT
TTTTAGAGTGATTGAGAACAACCAAACTCAGCATTCACACGCCTTCATTT
GGGCTTCGCCTCGTGAGCAACTACGGGCAAGAAATAGAAAACAATATCCA
CAGGCTTTCAGCTATCTCTTGCGTGCGGAGGAAATATGCCTCGCTGTTGT
CGTGGCTTCGCGGCAAGGCAAACGTTCATTTCAAACATCGTATTTTCTAG
GCCCATATCATGCTGGGCCCTGCCTCTCTCCATTGCACAATTTTCTCATT
CACAAACGTGTTATCGCCGCGCTAACCGGGCCGCGAGGAATCGTTATCTT
TGATGGTGTTCGAAGGTGTTGTCTTGACCGGATGTCGAAGTTTGACGTGT
TTGGTGGAACATGGCAACGTTGACCACATAGTCGAAGTTTCTTTGGGTAT
CGTTTGTGGTTTTGTCTGATAGGTGCTTGGTCATCCCAGCGAGCTTGGCG
TTCACTTGTGTCCCCAAACTGTTGGTGCCATTTTCGTGTTTTCACGTCGC
GATACCCCACCTGTTCTGGCTTAGTTGACAACTAAGCGGCTGAACATTCT
TCTTCGTATTTTCGCTTGAGACCCTCGTGCCACTTACGTTCATGTTTGCC
GTGCCTCGTTTTCCTGTTTACGGTTGGGAACTTCATGGGGCGTTGCTTCC
ATCAGTGGCGGCTGTGAGTGATGACCTTGTGCCCCAGGACGAGCTGAGAG
AGATACTGGCACTCCACGATGAGCTGCTTCGCGAACGTAGTGCTGACAAC
AAATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig699:11811..12766+

>mRNA_Ecto-sp13_S_contig699.18008.1 ID=mRNA_Ecto-sp13_S_contig699.18008.1|Name=mRNA_Ecto-sp13_S_contig699.18008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig699:11811..12766+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCGGCTGCGGGCAATGATGTGGTGACCCTGGGGCAGCTGGCAGAGGC
CGTGGAACTCCTTAAGGAAGTGCATAGCCAGTACGATGAGCTGCATCGCG
AGCATGATGCCAAGCTGGGCCGTTTTCAGAGGGCGGTTGACAGGATCACC
CGCAAATTGGCGGCTGTGAGTGATGACCTTGTGCCCCAGGACGAGCTGAG
AGAGATACTGGCACTCCACGATGAGCTGCTTCGCGAACGTAGTGCTGACA
ACAAATAG
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