mRNA_Ecto-sp13_S_contig6989.18006.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6989.18006.1
Unique NamemRNA_Ecto-sp13_S_contig6989.18006.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6989.18006.1 vs. uniprot
Match: A0A6H5K7R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R3_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 1.060e-101
Identity = 199/241 (82.57%), Postives = 205/241 (85.06%), Query Frame = 1 
Query:    1 ASERIWRASLSGNHNINNNSYHEHGRRNGGGRAKAKDASKAGVVPGGVRDDVSSTKGMGLLKSEGHRRHQQRQAPQCLPSGARPMATPSTTSRSAGVDEHDKADPSRVATGDRTAARATTSTPALFSVPPSPVPSSSPAAANNALSSEHPPCNKLPPEVLASMLLSDPEDDIVGKEIVPAASALAERTRQWELQQQRDRQXXXXXXXXXXXLRNQAHVLLQPFPDLPYGFTDLGRRVNVDD 723
            ASERIWRASLSGNH+INN SYHEHGRRNGGGRAKA D SKAGVVPGGVRD V STKGM LLKSEGHR   QRQAP  LPSG RPMATP+TTS SAGVDEH+ AD S VATG +TAAR TTSTPALFSVPPSP  SS PAAA  A SSEHP CNKLPPEVLASMLLS  ++DI GKEIV AA ALAERTRQWELQQ      XXXXXXXXXXLRNQAHVLLQPFPDLPYGFTDLGRRVNVDD
Sbjct:  422 ASERIWRASLSGNHDINN-SYHEHGRRNGGGRAKATDTSKAGVVPGGVRDGVPSTKGMDLLKSEGHR---QRQAPPRLPSGTRPMATPNTTSLSAGVDEHNNADASGVATGGQTAARTTTSTPALFSVPPSPAASSCPAAAV-ASSSEHPRCNKLPPEVLASMLLSVHDEDIGGKEIVHAAGALAERTRQWELQQ------XXXXXXXXXXLRNQAHVLLQPFPDLPYGFTDLGRRVNVDD 651
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BLAST of mRNA_Ecto-sp13_S_contig6989.18006.1 vs. uniprot
Match: D7FHP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP8_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 8.840e-29
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 ASERIWRASLSGNHNINNNSYHEHGRRNGGGRAKAKDASKAGVVPGGVRDDVSSTKGMGLLKSEGHRRHQQRQAPQCLPSGARPMAT 261
            ASERIWRASLSGNH+INN SYHEHGRRNGGGRA+AKDASKAGVVPGGVRD+V ST GMG L++EGH    QRQAP  LPSG+ P AT
Sbjct:  464 ASERIWRASLSGNHDINN-SYHEHGRRNGGGRAEAKDASKAGVVPGGVRDEVPSTDGMGSLQAEGH---WQRQAPPRLPSGSTPPAT 546
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6989.18006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K7R3_9PHAE1.060e-10182.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHP8_ECTSI8.840e-2979.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6989contigEcto-sp13_S_contig6989:5314..6036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size724
Hectar predicted targeting categoryother localisation
Exons1
Cds size723
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463958.1147661-CDS-Ecto-sp13_S_contig6989:5313..60361681463958.1147661-CDS-Ecto-sp13_S_contig6989:5313..6036Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6989 5314..6036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6989.18006.1prot_Ecto-sp13_S_contig6989.18006.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6989 5314..6036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6989.18006.1

>prot_Ecto-sp13_S_contig6989.18006.1 ID=prot_Ecto-sp13_S_contig6989.18006.1|Name=mRNA_Ecto-sp13_S_contig6989.18006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=241bp
ASERIWRASLSGNHNINNNSYHEHGRRNGGGRAKAKDASKAGVVPGGVRD
DVSSTKGMGLLKSEGHRRHQQRQAPQCLPSGARPMATPSTTSRSAGVDEH
DKADPSRVATGDRTAARATTSTPALFSVPPSPVPSSSPAAANNALSSEHP
PCNKLPPEVLASMLLSDPEDDIVGKEIVPAASALAERTRQWELQQQRDRQ
LQQQQRRQQQQLRNQAHVLLQPFPDLPYGFTDLGRRVNVDD
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mRNA from alignment at Ecto-sp13_S_contig6989:5314..6036+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6989.18006.1 ID=mRNA_Ecto-sp13_S_contig6989.18006.1|Name=mRNA_Ecto-sp13_S_contig6989.18006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6989:5314..6036+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTCTGAGAGGATATGGAGGGCGAGCCTGTCGGGGAACCACAACATCAA
CAACAACAGCTACCACGAGCACGGGCGACGAAACGGTGGCGGAAGGGCAA
AGGCCAAGGATGCCTCGAAAGCGGGTGTTGTGCCCGGCGGCGTCAGGGAT
GATGTGTCGTCCACGAAAGGGATGGGTTTGCTCAAGTCGGAGGGACACCG
GCGACACCAGCAACGGCAAGCCCCCCAGTGTCTGCCCAGCGGGGCTAGAC
CCATGGCCACGCCAAGCACGACTTCCCGTTCGGCTGGGGTTGATGAGCAC
GACAAAGCCGACCCATCGAGGGTGGCAACGGGAGACCGAACAGCAGCGCG
GGCGACGACGTCGACACCGGCGTTGTTCTCAGTACCACCATCACCAGTTC
CTTCTTCTTCTCCTGCTGCTGCCAACAACGCGTTGAGCTCAGAGCACCCC
CCCTGCAACAAGCTACCGCCCGAGGTTCTCGCGAGCATGCTCCTCTCCGA
CCCCGAGGATGACATTGTCGGGAAGGAGATAGTGCCCGCGGCCAGTGCCC
TAGCCGAGCGCACGCGGCAGTGGGAGCTTCAGCAGCAGCGCGACAGGCAG
CTGCAGCAGCAGCAACGACGACAGCAGCAACAGCTTAGGAACCAGGCGCA
CGTGCTTCTACAACCGTTTCCAGACCTCCCGTATGGCTTCACGGACCTTG
GCAGGCGGGTGAACGTCGACGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6989:5314..6036+

>mRNA_Ecto-sp13_S_contig6989.18006.1 ID=mRNA_Ecto-sp13_S_contig6989.18006.1|Name=mRNA_Ecto-sp13_S_contig6989.18006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6989:5314..6036+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTCTGAGAGGATATGGAGGGCGAGCCTGTCGGGGAACCACAACATCAA
CAACAACAGCTACCACGAGCACGGGCGACGAAACGGTGGCGGAAGGGCAA
AGGCCAAGGATGCCTCGAAAGCGGGTGTTGTGCCCGGCGGCGTCAGGGAT
GATGTGTCGTCCACGAAAGGGATGGGTTTGCTCAAGTCGGAGGGACACCG
GCGACACCAGCAACGGCAAGCCCCCCAGTGTCTGCCCAGCGGGGCTAGAC
CCATGGCCACGCCAAGCACGACTTCCCGTTCGGCTGGGGTTGATGAGCAC
GACAAAGCCGACCCATCGAGGGTGGCAACGGGAGACCGAACAGCAGCGCG
GGCGACGACGTCGACACCGGCGTTGTTCTCAGTACCACCATCACCAGTTC
CTTCTTCTTCTCCTGCTGCTGCCAACAACGCGTTGAGCTCAGAGCACCCC
CCCTGCAACAAGCTACCGCCCGAGGTTCTCGCGAGCATGCTCCTCTCCGA
CCCCGAGGATGACATTGTCGGGAAGGAGATAGTGCCCGCGGCCAGTGCCC
TAGCCGAGCGCACGCGGCAGTGGGAGCTTCAGCAGCAGCGCGACAGGCAG
CTGCAGCAGCAGCAACGACGACAGCAGCAACAGCTTAGGAACCAGGCGCA
CGTGCTTCTACAACCGTTTCCAGACCTCCCGTATGGCTTCACGGACCTTG
GCAGGCGGGTGAACGTCGACGAC
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