mRNA_Ecto-sp13_S_contig6988.18004.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6988.18004.1
Unique NamemRNA_Ecto-sp13_S_contig6988.18004.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6988.18004.1 vs. uniprot
Match: D8LAX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX3_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 3.140e-102
Identity = 161/181 (88.95%), Postives = 166/181 (91.71%), Query Frame = 1 
Query:    1 QVWFTAHHVGHVLKTLRSGRLDDLHRWPGSVGNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRRSDPDTRRGKTSTHEQQRASGGSSRSGMSRASSRTWSLPPLTDATHPKGGEEDQGVSSGGIWRAPCHGRAVAAPPMVRDCRAVHLDEAAILNKVYEFL 543
            QVWFTAHHVGHVLKTLRSGRLDDLHR      NPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRRSDP TRRGKTSTHEQQRASGGS RSGMSR+SSRTWSLPPLT+A H KGGEEDQG SSGG  RAPCHG AVAAP +VR+CRAVHLDEAAILNK+YEFL
Sbjct:   44 QVWFTAHHVGHVLKTLRSGRLDDLHR--RMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRRSDPGTRRGKTSTHEQQRASGGS-RSGMSRSSSRTWSLPPLTEAIHLKGGEEDQGFSSGGGGRAPCHGGAVAAPSVVRECRAVHLDEAAILNKIYEFL 221
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BLAST of mRNA_Ecto-sp13_S_contig6988.18004.1 vs. uniprot
Match: A0A6H5JYH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH9_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 3.380e-102
Identity = 159/180 (88.33%), Postives = 161/180 (89.44%), Query Frame = 1 
Query:    4 VWFTAHHVGHVLKTLRSGRLDDLHRWPGSVGNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRRSDPDTRRGKTSTHEQQRASGGSSRSGMSRASSRTWSLPPLTDATHPKGGEEDQGVSSGGIWRAPCHGRAVAAPPMVRDCRAVHLDEAAILNKVYEFL 543
            VWFTAHHVGHVLKTLRSGRLDDLHR      NPHVLDARVCRAVIWWSILAEAMEAAKE      XX ECRRLVVGLAVSQRRSDP TRRGKT THEQQRASGGSSRSGMSR+SSRTWSLPPLTDATH KGGEEDQGVSSGG WRAPCHG AVAAPP VR+CRAVHLDEAAILNKVYEFL
Sbjct:   36 VWFTAHHVGHVLKTLRSGRLDDLHR--RMKRNPHVLDARVCRAVIWWSILAEAMEAAKEXXXXXXXXXECRRLVVGLAVSQRRSDPGTRRGKTFTHEQQRASGGSSRSGMSRSSSRTWSLPPLTDATHLKGGEEDQGVSSGGGWRAPCHGGAVAAPPAVRECRAVHLDEAAILNKVYEFL 213
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6988.18004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAX3_ECTSI3.140e-10288.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYH9_9PHAE3.380e-10288.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6988contigEcto-sp13_S_contig6988:478..1343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size546
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006110.1
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463957.9911659-CDS-Ecto-sp13_S_contig6988:477..5541681463957.9911659-CDS-Ecto-sp13_S_contig6988:477..554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6988 478..554 +
1681463958.001519-CDS-Ecto-sp13_S_contig6988:874..13431681463958.001519-CDS-Ecto-sp13_S_contig6988:874..1343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6988 875..1343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6988.18004.1prot_Ecto-sp13_S_contig6988.18004.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6988 478..1343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6988.18004.1

>prot_Ecto-sp13_S_contig6988.18004.1 ID=prot_Ecto-sp13_S_contig6988.18004.1|Name=mRNA_Ecto-sp13_S_contig6988.18004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
QVWFTAHHVGHVLKTLRSGRLDDLHRWPGSVGNPHVLDARVCRAVIWWSI
LAEAMEAAKEAERRRARRRECRRLVVGLAVSQRRSDPDTRRGKTSTHEQQ
RASGGSSRSGMSRASSRTWSLPPLTDATHPKGGEEDQGVSSGGIWRAPCH
GRAVAAPPMVRDCRAVHLDEAAILNKVYEFL*
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mRNA from alignment at Ecto-sp13_S_contig6988:478..1343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6988.18004.1 ID=mRNA_Ecto-sp13_S_contig6988.18004.1|Name=mRNA_Ecto-sp13_S_contig6988.18004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=866bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6988:478..1343+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTGGTTCACGGCGCATCACGTGGGCCACGTCCTGAAAACGTTGCG
ATCGGGCCGGTTGGACGACCTTCACAGGTAGGTGCCGCTGTAAGGCGTTG
TGTACTACGACGATTTTCCGGAACTCCTCTGAGCTATTTTGTGCTGCGAG
CCAGTTGGACTCCATCCTTTGCCACCCGCCAATGCTCATCGCCCAAACCA
CGACTTGCCCACGACATCCGCAGGACACCTCACAGGTAGTTAGAATAGAA
TCTGCGTTCGCAAGCATCCAATTATCTCGAGAAGACTACGCCCTCTCGAC
GGCCTAATCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCGCGAGAGAAACAGCGACCCCCCCATGGCGGCAACCCCCGCGTAGGTG
GCCGGGATCTGTCGGGAACCCACACGTGCTGGACGCCCGCGTTTGTCGGG
CGGTCATTTGGTGGAGCATTCTTGCGGAGGCGATGGAAGCCGCGAAGGAG
GCCGAGCGGCGGCGGGCTAGGCGGCGAGAATGCCGCCGGTTGGTGGTCGG
GCTCGCCGTCTCGCAGCGGCGGAGCGACCCCGACACTCGACGAGGCAAAA
CCAGCACGCACGAACAGCAACGAGCATCGGGCGGGTCGTCCCGATCGGGC
ATGTCCCGCGCGTCCTCTCGCACGTGGTCACTCCCACCATTAACGGACGC
GACTCACCCCAAGGGCGGCGAGGAGGACCAAGGGGTTTCTAGCGGTGGCA
TTTGGCGTGCTCCCTGCCACGGGAGAGCGGTGGCGGCGCCGCCGATGGTT
CGGGATTGTCGCGCGGTTCACCTTGACGAAGCGGCTATTCTCAATAAAGT
CTACGAATTTTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6988:478..1343+

>mRNA_Ecto-sp13_S_contig6988.18004.1 ID=mRNA_Ecto-sp13_S_contig6988.18004.1|Name=mRNA_Ecto-sp13_S_contig6988.18004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6988:478..1343+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTGGTTCACGGCGCATCACGTGGGCCACGTCCTGAAAACGTTGCG
ATCGGGCCGGTTGGACGACCTTCACAGGTGGCCGGGATCTGTCGGGAACC
CACACGTGCTGGACGCCCGCGTTTGTCGGGCGGTCATTTGGTGGAGCATT
CTTGCGGAGGCGATGGAAGCCGCGAAGGAGGCCGAGCGGCGGCGGGCTAG
GCGGCGAGAATGCCGCCGGTTGGTGGTCGGGCTCGCCGTCTCGCAGCGGC
GGAGCGACCCCGACACTCGACGAGGCAAAACCAGCACGCACGAACAGCAA
CGAGCATCGGGCGGGTCGTCCCGATCGGGCATGTCCCGCGCGTCCTCTCG
CACGTGGTCACTCCCACCATTAACGGACGCGACTCACCCCAAGGGCGGCG
AGGAGGACCAAGGGGTTTCTAGCGGTGGCATTTGGCGTGCTCCCTGCCAC
GGGAGAGCGGTGGCGGCGCCGCCGATGGTTCGGGATTGTCGCGCGGTTCA
CCTTGACGAAGCGGCTATTCTCAATAAAGTCTACGAATTTTTGTGA
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