prot_Ecto-sp13_S_contig100.17.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig100.17.1
Unique Nameprot_Ecto-sp13_S_contig100.17.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length103
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: D8LHA3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA3_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 2.480e-36
Identity = 77/89 (86.52%), Postives = 78/89 (87.64%), Query Frame = 0 
Query:   14 GGPRTTSSHRTPSLALRRRSRSRRPTAPSSSTTSSRLAMRMVWWCGSTMPPGTSCRATPGSRTGSSSSRWTTTPALTGSRTPATSPSAE 102
            G  RTT SHRTPS ALRRRSRSRRPTAPSSSTTSSRLAM M WWCGSTMPP TSCRATP + TGSSSSRWTTT ALTGSRTPATS SAE
Sbjct:  217 GRSRTTYSHRTPSPALRRRSRSRRPTAPSSSTTSSRLAMPMAWWCGSTMPPRTSCRATPRATTGSSSSRWTTTRALTGSRTPATSLSAE 305
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHA3_ECTSI2.480e-3686.52Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100contigEcto-sp13_S_contig100:133..441 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100.17.1mRNA_Ecto-sp13_S_contig100.17.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig100 133..1826 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig100.17.1 ID=prot_Ecto-sp13_S_contig100.17.1|Name=mRNA_Ecto-sp13_S_contig100.17.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
RTWGRTSRTLCLLGGPRTTSSHRTPSLALRRRSRSRRPTAPSSSTTSSRL
AMRMVWWCGSTMPPGTSCRATPGSRTGSSSSRWTTTPALTGSRTPATSPS
AE*
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