mRNA_Ecto-sp13_S_contig100.17.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: A0A6H5KHR6_9PHAE (MEP22d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR6_9PHAE) HSP 1 Score: 198 bits (504), Expect = 5.390e-58 Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 3 Query: 3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPVC 302
YLGSDEPDVVSSGRSQNN+FSQNSFAGA ETIKIKEADGTQFLDN+FEVGDADGLVVRFDNATGNLMQGNTGL+DGEFELKVDNDACFDGESDSGYEPVC
Sbjct: 19 YLGSDEPDVVSSGRSQNNVFSQNSFAGAAETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATGNLMQGNTGLDDGEFELKVDNDACFDGESDSGYEPVC 118
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: A0A6H5JTN9_9PHAE (MEP5b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN9_9PHAE) HSP 1 Score: 187 bits (474), Expect = 1.460e-52 Identity = 90/100 (90.00%), Postives = 97/100 (97.00%), Query Frame = 3 Query: 3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPVC 302
YLGSDEPDVVSSGRSQNN+FSQNSFAGA ETIKIKEADGTQFLDN+FEVGDADGLVVRFD+ATGNLM+GNTGL+DGEFELKV ND+CFD ESDSGYEP+C
Sbjct: 93 YLGSDEPDVVSSGRSQNNVFSQNSFAGAAETIKIKEADGTQFLDNVFEVGDADGLVVRFDDATGNLMKGNTGLDDGEFELKVTNDSCFDEESDSGYEPLC 192
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 194 bits (493), Expect = 1.060e-51 Identity = 93/100 (93.00%), Postives = 99/100 (99.00%), Query Frame = 3 Query: 3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPVC 302
YLG+DEPDVVSSGRSQNN+FSQNSF+GAEETIKIKEADGTQFLDN+FEVGDADGLVVRFDNAT NLMQGNTGL+DGEFELKVDNDACFDGE+DSGYEPVC
Sbjct: 409 YLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDNDACFDGEADSGYEPVC 508
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 183 bits (465), Expect = 1.070e-47 Identity = 87/100 (87.00%), Postives = 97/100 (97.00%), Query Frame = 3 Query: 3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPVC 302
YLGSDEPDVVSSGRSQNN+FSQNSF+GAEETIKIKEADGTQFLDN+FEVGDADGLVVRFD+A ++MQGNTGL++G+FELKV ND+CFDGESDSGYEPVC
Sbjct: 413 YLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGDFELKVTNDSCFDGESDSGYEPVC 512
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: D8LHA3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA3_ECTSI) HSP 1 Score: 135 bits (340), Expect = 4.760e-32 Identity = 77/89 (86.52%), Postives = 78/89 (87.64%), Query Frame = 1 Query: 40 GGPRTTSSHRTPSLALRRRSRSRRPTAPSSSTTSSRLAMRMVWWCGSTMPPGTSCRATPGSRTGSSSSRWTTTPALTGSRTPATSPSAE 306
G RTT SHRTPS ALRRRSRSRRPTAPSSSTTSSRLAM M WWCGSTMPP TSCRATP + TGSSSSRWTTT ALTGSRTPATS SAE
Sbjct: 217 GRSRTTYSHRTPSPALRRRSRSRRPTAPSSSTTSSRLAMPMAWWCGSTMPPRTSCRATPRATTGSSSSRWTTTRALTGSRTPATSLSAE 305
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE) HSP 1 Score: 102 bits (253), Expect = 4.100e-20 Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 3 Query: 3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPVC 302
Y GSD+P VV SGRSQ+N+FS N+ G +E+IK+ ADGT+F+DN F+ VRF++A +M GNTGL G LKV ACFD +SDS Y+PVC
Sbjct: 232 YEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKSA----KTVRFEDAQDTIMSGNTGL--GSATLKVSKGACFDKKSDSDYKPVC 325
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE) HSP 1 Score: 100 bits (249), Expect = 4.800e-20 Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 3 Query: 3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPV 299
YLG+D PDVV SGRS++N F +N+ G ET+KI +ADGT+F+ N FE D + +RFD+A +M GNTGL D +LKV N A FD +D G+EP+
Sbjct: 173 YLGTDAPDVVKSGRSKDNCFQENTIVGGIETLKIMDADGTEFIGNSFE----DAVTIRFDDAARTVMSGNTGLTD--TKLKVHNGASFDKRADYGFEPI 265
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 103 bits (257), Expect = 6.900e-20 Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 3 Query: 3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPV 299
YLG+D+P+VV SGRSQ+N+F +N+ G E+I +KEADGTQF+DN F+ D +RF +AT LM GNTGL D LKVD A FD SD G+EP+
Sbjct: 380 YLGADKPEVVDSGRSQDNVFMENNIIGGVESILLKEADGTQFIDNTFK----DAAAIRFVDATKTLMSGNTGLADST--LKVDRGATFDESSDHGFEPI 472
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 100 bits (249), Expect = 8.420e-19 Identity = 53/99 (53.54%), Postives = 67/99 (67.68%), Query Frame = 3 Query: 3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPV 299
YLGSD PDVV SGRSQ+N+F +N+ G E+IK+ +ADGTQF+DN FE D +RF++A LM GN GL +LKV N A FD SD G+EP+
Sbjct: 406 YLGSDAPDVVDSGRSQDNVFQENNIIGGVESIKLLDADGTQFIDNTFE----DATTIRFNDAKKTLMSGNIGLN--MSKLKVVNGASFDASSDYGFEPI 498
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE) HSP 1 Score: 100 bits (249), Expect = 8.570e-19 Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = 3 Query: 3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPVC 302
Y GSD+P VV SGRSQ+N+FS N+ G +E+IK+ ADGT+F+DN F+ RF++A LM GNTGL G LKV ACFD +SDS Y+PVC
Sbjct: 409 YEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKRA----KTARFEDAETTLMSGNTGL--GSATLKVSKGACFDKKSDSDYKPVC 502 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig100.17.1 >prot_Ecto-sp13_S_contig100.17.1 ID=prot_Ecto-sp13_S_contig100.17.1|Name=mRNA_Ecto-sp13_S_contig100.17.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp RTWGRTSRTLCLLGGPRTTSSHRTPSLALRRRSRSRRPTAPSSSTTSSRLback to top mRNA from alignment at Ecto-sp13_S_contig100:133..1826+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig100.17.1 ID=mRNA_Ecto-sp13_S_contig100.17.1|Name=mRNA_Ecto-sp13_S_contig100.17.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1694bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100:133..1826+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100:133..1826+ >mRNA_Ecto-sp13_S_contig100.17.1 ID=mRNA_Ecto-sp13_S_contig100.17.1|Name=mRNA_Ecto-sp13_S_contig100.17.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100:133..1826+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |