mRNA_Ecto-sp13_S_contig100.17.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100.17.1
Unique NamemRNA_Ecto-sp13_S_contig100.17.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: A0A6H5KHR6_9PHAE (MEP22d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR6_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 5.390e-58
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 3 
Query:    3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPVC 302
            YLGSDEPDVVSSGRSQNN+FSQNSFAGA ETIKIKEADGTQFLDN+FEVGDADGLVVRFDNATGNLMQGNTGL+DGEFELKVDNDACFDGESDSGYEPVC
Sbjct:   19 YLGSDEPDVVSSGRSQNNVFSQNSFAGAAETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATGNLMQGNTGLDDGEFELKVDNDACFDGESDSGYEPVC 118
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BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: A0A6H5JTN9_9PHAE (MEP5b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN9_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.460e-52
Identity = 90/100 (90.00%), Postives = 97/100 (97.00%), Query Frame = 3 
Query:    3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPVC 302
            YLGSDEPDVVSSGRSQNN+FSQNSFAGA ETIKIKEADGTQFLDN+FEVGDADGLVVRFD+ATGNLM+GNTGL+DGEFELKV ND+CFD ESDSGYEP+C
Sbjct:   93 YLGSDEPDVVSSGRSQNNVFSQNSFAGAAETIKIKEADGTQFLDNVFEVGDADGLVVRFDDATGNLMKGNTGLDDGEFELKVTNDSCFDEESDSGYEPLC 192
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BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.060e-51
Identity = 93/100 (93.00%), Postives = 99/100 (99.00%), Query Frame = 3 
Query:    3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPVC 302
            YLG+DEPDVVSSGRSQNN+FSQNSF+GAEETIKIKEADGTQFLDN+FEVGDADGLVVRFDNAT NLMQGNTGL+DGEFELKVDNDACFDGE+DSGYEPVC
Sbjct:  409 YLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDNDACFDGEADSGYEPVC 508
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BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.070e-47
Identity = 87/100 (87.00%), Postives = 97/100 (97.00%), Query Frame = 3 
Query:    3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPVC 302
            YLGSDEPDVVSSGRSQNN+FSQNSF+GAEETIKIKEADGTQFLDN+FEVGDADGLVVRFD+A  ++MQGNTGL++G+FELKV ND+CFDGESDSGYEPVC
Sbjct:  413 YLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGDFELKVTNDSCFDGESDSGYEPVC 512
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BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: D8LHA3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA3_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 4.760e-32
Identity = 77/89 (86.52%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:   40 GGPRTTSSHRTPSLALRRRSRSRRPTAPSSSTTSSRLAMRMVWWCGSTMPPGTSCRATPGSRTGSSSSRWTTTPALTGSRTPATSPSAE 306
            G  RTT SHRTPS ALRRRSRSRRPTAPSSSTTSSRLAM M WWCGSTMPP TSCRATP + TGSSSSRWTTT ALTGSRTPATS SAE
Sbjct:  217 GRSRTTYSHRTPSPALRRRSRSRRPTAPSSSTTSSRLAMPMAWWCGSTMPPRTSCRATPRATTGSSSSRWTTTRALTGSRTPATSLSAE 305
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BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.100e-20
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 3 
Query:    3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPVC 302
            Y GSD+P VV SGRSQ+N+FS N+  G +E+IK+  ADGT+F+DN F+        VRF++A   +M GNTGL  G   LKV   ACFD +SDS Y+PVC
Sbjct:  232 YEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKSA----KTVRFEDAQDTIMSGNTGL--GSATLKVSKGACFDKKSDSDYKPVC 325
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BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 4.800e-20
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 3 
Query:    3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPV 299
            YLG+D PDVV SGRS++N F +N+  G  ET+KI +ADGT+F+ N FE    D + +RFD+A   +M GNTGL D   +LKV N A FD  +D G+EP+
Sbjct:  173 YLGTDAPDVVKSGRSKDNCFQENTIVGGIETLKIMDADGTEFIGNSFE----DAVTIRFDDAARTVMSGNTGLTD--TKLKVHNGASFDKRADYGFEPI 265
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BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.900e-20
Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 3 
Query:    3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPV 299
            YLG+D+P+VV SGRSQ+N+F +N+  G  E+I +KEADGTQF+DN F+    D   +RF +AT  LM GNTGL D    LKVD  A FD  SD G+EP+
Sbjct:  380 YLGADKPEVVDSGRSQDNVFMENNIIGGVESILLKEADGTQFIDNTFK----DAAAIRFVDATKTLMSGNTGLADST--LKVDRGATFDESSDHGFEPI 472
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BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 8.420e-19
Identity = 53/99 (53.54%), Postives = 67/99 (67.68%), Query Frame = 3 
Query:    3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPV 299
            YLGSD PDVV SGRSQ+N+F +N+  G  E+IK+ +ADGTQF+DN FE    D   +RF++A   LM GN GL     +LKV N A FD  SD G+EP+
Sbjct:  406 YLGSDAPDVVDSGRSQDNVFQENNIIGGVESIKLLDADGTQFIDNTFE----DATTIRFNDAKKTLMSGNIGLN--MSKLKVVNGASFDASSDYGFEPI 498
[Close]
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 8.570e-19
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = 3 
Query:    3 YLGSDEPDVVSSGRSQNNLFSQNSFAGAEETIKIKEADGTQFLDNIFEVGDADGLVVRFDNATGNLMQGNTGLEDGEFELKVDNDACFDGESDSGYEPVC 302
            Y GSD+P VV SGRSQ+N+FS N+  G +E+IK+  ADGT+F+DN F+         RF++A   LM GNTGL  G   LKV   ACFD +SDS Y+PVC
Sbjct:  409 YEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKRA----KTARFEDAETTLMSGNTGL--GSATLKVSKGACFDKKSDSDYKPVC 502
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KHR6_9PHAE5.390e-5896.00MEP22d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
A0A6H5JTN9_9PHAE1.460e-5290.00MEP5b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G339_ECTSI1.060e-5193.00Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI1.070e-4787.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LHA3_ECTSI4.760e-3286.52Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAJ9_9PHAE4.100e-2053.00Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAK0_9PHAE4.800e-2051.52Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ8_9PHAE6.900e-2054.55Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ7_9PHAE8.420e-1953.54Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
Q7XAK2_9PHAE8.570e-1953.00Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100contigEcto-sp13_S_contig100:133..1826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1695
Hectar predicted targeting categorymitochondrion
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462498.7700772-CDS-Ecto-sp13_S_contig100:132..4411681462498.7700772-CDS-Ecto-sp13_S_contig100:132..441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100 133..441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462498.7812195-UTR-Ecto-sp13_S_contig100:441..18261681462498.7812195-UTR-Ecto-sp13_S_contig100:441..1826Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig100 442..1826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100.17.1prot_Ecto-sp13_S_contig100.17.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100 133..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100.17.1

>prot_Ecto-sp13_S_contig100.17.1 ID=prot_Ecto-sp13_S_contig100.17.1|Name=mRNA_Ecto-sp13_S_contig100.17.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
RTWGRTSRTLCLLGGPRTTSSHRTPSLALRRRSRSRRPTAPSSSTTSSRL
AMRMVWWCGSTMPPGTSCRATPGSRTGSSSSRWTTTPALTGSRTPATSPS
AE*
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mRNA from alignment at Ecto-sp13_S_contig100:133..1826+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100.17.1 ID=mRNA_Ecto-sp13_S_contig100.17.1|Name=mRNA_Ecto-sp13_S_contig100.17.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1694bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100:133..1826+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTACCTGGGGTCGGACGAGCCGGACGTTGTGTCTTCTGGGCGGTCCCAG
AACAACCTCTTCTCACAGAACTCCTTCGCTGGCGCTGAGGAGACGATCAA
GATCAAGGAGGCCGACGGCACCCAGTTCCTCGACAACATCTTCGAGGTTG
GCGATGCGGATGGTCTGGTGGTGCGGTTCGACAATGCCACCGGGAACCTC
ATGCAGGGCAACACCGGGCTCGAGGACGGGGAGTTCGAGCTCAAGGTGGA
CAACGACGCCTGCTTTGACGGGGAGTCGGACTCCGGCTACGAGCCCGTCT
GCTGAGTGACATAGCCGTATTTCGCTTGTGTACAATAATGGTGGAAGGCT
GAAGCGGCATGGTGTAGGGGTGTTGGTTTTGCTAGCTCTCAGTGGGGGCG
AAGAACCCATCTGTCGGGGGGGAGGGTACAACAACTCGGTCGTATATCGG
ATTGTGCCGGCAGCATCATCATGATCAGATTTAGCCACACCAATATTTTT
TCTCACCTATTCGTGATACTGTTGTTCATCCTCCTAATCCAGACTATGTG
GGGCTGGGGTCTCTCTTGTTTTTTTTTATGCGATTGTCGTCGTTCGCGAT
TGAATTATTCTCGCGAACGCTCCCTAGATTTCATCGCCCGTTGTCATGTT
GATTTCTTTTTATTATCTGTCTAGCGCCGTCTAGATTTTTGAAGCCCTCG
TGATTGTTGGTCGTGGTCGTGGTGTGTGTGTTGATGTGTGACGTGTGGTG
TGCATGCCCCGTACCGCAGAAGCCTGAAGAAACACGGATTTTTGTCGACT
TGCGGTGTGATGTGGGGCGGTTGTCAAGGACGCAAGCTGAGAAGCAACCC
GTGCCCCCAACCGCTCTGGACGCGCTAGCTACCGTTCCCAGCGTAGCAAA
GAACATGACAATGGCCAGCGGTATTCTGTGAGTATGTTAACACTTTGTTT
GGCCCTTGCTTCGAGAATGTTGTTGTCTTCGTATGTGAGGATTGTGGTGT
GTCCTGGCTACAGTAATATAGCAGTTCTATTATTGCACCGTCGTGATGAA
ATTCTGGCTGTTTGTCTTATCTTGTTTTTATCTTGTATTCGGGTACGATA
GTACCGCAGTTTCCTTCTACCAGCACTGTGTGGAATTGTTAGGTGGTTTG
TTTCGTGAGCAGTAGGAAGGCGGATTCCATGTTTGATTTTTGTGCAGAAC
GTCGAGAGATCGATCGAACGTACGTGTTTTGAAGCAACAGGCCGCCCTTG
GGTGATACTGATGCAATAGAGATTCCGTGCGACCATTTGGTGTTGAGAAG
GTAGATTTCCTTTGAGAGGGCCTTGTGCAAATACGAAAGGCGTGGGTGGG
TTTCAATTTCGTGCTCAGGGTTCAAGAGAGTGTAGGAATTTTCGTGTTCG
TTTGTTGCGGTGTCCTTGAGACATTGATCACGTTTATTGTTTTCGGGAGT
TGCCCACGTCGAGACCCACCCGACCATCTTCGAGCTTGAGGCGTCCAAAC
GCCATGCCACGTGCATCCGTACGAAGCCCAGCAGGCACAAGAGGCACAGG
AGGGAGAAGAATGGTTTCATTCTTGTGTCGTGTTGATGCTAACGCCCTAG
AATGGCGGTGTCGCTACTCTGTTCGGGAACGGATATCGACATCTATGTGC
GTACATTGAAGATGAATGGATGTGTCCCACAATCTAATGACGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100:133..1826+

>mRNA_Ecto-sp13_S_contig100.17.1 ID=mRNA_Ecto-sp13_S_contig100.17.1|Name=mRNA_Ecto-sp13_S_contig100.17.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100:133..1826+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTACCTGGGGTCGGACGAGCCGGACGTTGTGTCTTCTGGGCGGTCCCAG
AACAACCTCTTCTCACAGAACTCCTTCGCTGGCGCTGAGGAGACGATCAA
GATCAAGGAGGCCGACGGCACCCAGTTCCTCGACAACATCTTCGAGGTTG
GCGATGCGGATGGTCTGGTGGTGCGGTTCGACAATGCCACCGGGAACCTC
ATGCAGGGCAACACCGGGCTCGAGGACGGGGAGTTCGAGCTCAAGGTGGA
CAACGACGCCTGCTTTGACGGGGAGTCGGACTCCGGCTACGAGCCCGTCT
GCTGAGTGA
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