mRNA_Ecto-sp13_S_contig69851.17999.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69851.17999.1
Unique NamemRNA_Ecto-sp13_S_contig69851.17999.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69851.17999.1 vs. uniprot
Match: D8LNE4_ECTSI (PITH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE4_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.020e-49
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    1 EQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSV 249
            EQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLS+
Sbjct:   64 EQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSI 146
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BLAST of mRNA_Ecto-sp13_S_contig69851.17999.1 vs. uniprot
Match: A0A835Z9A2_9STRA (PITH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9A2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.560e-31
Identity = 57/83 (68.67%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 EQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSV 249
            EQLLLH+GF ETVKLHSI+F A +DD+AP TVKL++NR+SMGFSD +D+   QTLELT EDL   SA++LKFVKFQRVS +S+
Sbjct:   64 EQLLLHIGFNETVKLHSINFQALNDDSAPATVKLFINRDSMGFSDCEDIEATQTLELTAEDLKPDSATLLKFVKFQRVSSISI 146
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BLAST of mRNA_Ecto-sp13_S_contig69851.17999.1 vs. uniprot
Match: A0A024TZP3_9STRA (PITH domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZP3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.140e-25
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    1 EQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSV 249
            EQLL+H+ F E VK+HSI   AP DDTAP  VKL++NRN++GFSD  D+ P Q LE T+E L  G+   L+FVKFQRV+ L+V
Sbjct:   47 EQLLIHLEFKEAVKIHSISLKAPKDDTAPSVVKLFVNRNNLGFSDVTDIEPTQQLEWTQEQLQTGTPVELRFVKFQRVTSLTV 129
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BLAST of mRNA_Ecto-sp13_S_contig69851.17999.1 vs. uniprot
Match: A0A6S9JQ99_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JQ99_HETAK)

HSP 1 Score: 100 bits (250), Expect = 4.510e-25
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    1 EQLLLHVGFMETVKLHSIDFVAPSDDTA--PLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSV 249
            EQLLLH+ F ETVK+HSI+F +P+DD    P+TVKL++NR+SMGFSD +D+ P Q LEL  EDL   +A +LKFVKFQRV+ L +
Sbjct:   61 EQLLLHLDFNETVKIHSINFQSPADDPEAHPVTVKLFVNRDSMGFSDANDITPVQELELGPEDLGPDAACLLKFVKFQRVNSLII 145
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BLAST of mRNA_Ecto-sp13_S_contig69851.17999.1 vs. uniprot
Match: A0A1V9Z8E4_9STRA (Thioredoxin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8E4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 6.320e-25
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    1 EQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSV 249
            EQL++HV F E VKLHSI   AP+DDTAP  +KL++NRN++GFSD  D+ P Q +EL++E L AGS   L+FVKFQRV+ L++
Sbjct:   46 EQLIIHVEFKEAVKLHSIALKAPNDDTAPRVLKLFVNRNNLGFSDVVDIEPVQQIELSQEQLDAGSPIELRFVKFQRVTALTL 128
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BLAST of mRNA_Ecto-sp13_S_contig69851.17999.1 vs. uniprot
Match: A0A024U1J9_9STRA (PITH domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024U1J9_9STRA)

HSP 1 Score: 100 bits (248), Expect = 6.480e-25
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    1 EQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSV 249
            EQLL+H+ F E VK+HSI   AP DDTAP  VKL++NRN++GFSD  D+ P Q LE T+E L  G+   L+FVKFQRV+ L+V
Sbjct:   47 EQLLIHLEFKEAVKIHSISLKAPKDDTAPSVVKLFVNRNNLGFSDVTDIEPTQQLEWTQEQLQTGTPVELRFVKFQRVTSLTV 129
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BLAST of mRNA_Ecto-sp13_S_contig69851.17999.1 vs. uniprot
Match: A0A067C2U1_SAPPC (PITH domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067C2U1_SAPPC)

HSP 1 Score: 97.8 bits (242), Expect = 5.220e-24
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    1 EQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSV 249
            EQL++H+ F E VK+HSI   AP+DD+AP  +KL++NRN++GFSD  D+ P Q LEL  E L +GS   L+FVKFQRVS L++
Sbjct:   47 EQLIIHLEFKEAVKIHSIALKAPTDDSAPRVLKLFVNRNNLGFSDVADIEPVQQLELNDEQLASGSPIELRFVKFQRVSALTL 129
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BLAST of mRNA_Ecto-sp13_S_contig69851.17999.1 vs. uniprot
Match: A0A1V9ZC31_9STRA (PITH domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC31_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 7.210e-24
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 EQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSV 249
            EQL++H+ F E VK+HSI   AP+DDTAP  +KL++NR ++GFSD  D+ P Q ++LT+E L AG A  L+FVKFQRV+ L++
Sbjct:   46 EQLIIHLEFKEAVKIHSISLKAPNDDTAPRKLKLFVNRTNLGFSDVADIEPVQQIDLTQEQLDAGKAIELRFVKFQRVTSLTL 128
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BLAST of mRNA_Ecto-sp13_S_contig69851.17999.1 vs. uniprot
Match: W7TWZ4_9STRA (Thioredoxin-like protein 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWZ4_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 9.750e-24
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    1 EQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSV 249
            EQL+LH+ F E VK+HS++ VAP  + AP TVKLYLN+ S  F D +++ P Q LELT+ED  A   ++LKFVKFQRVS L++
Sbjct:   58 EQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTI 140
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BLAST of mRNA_Ecto-sp13_S_contig69851.17999.1 vs. uniprot
Match: A0A6G0XIK8_9STRA (PITH domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0XIK8_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.220e-22
Identity = 43/83 (51.81%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    1 EQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSV 249
            EQLL+H+ F + VK+HSI   AP DD+AP  +KL++NRN++GFSD  D+ P Q LE T++ L  G+   L+FVKFQRV+ L++
Sbjct:   48 EQLLIHLEFKDAVKIHSISVKAPHDDSAPSMIKLFVNRNNLGFSDVTDIEPTQKLEWTQDQLQTGTPVELRFVKFQRVTSLTI 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69851.17999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNE4_ECTSI2.020e-4998.80PITH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z9A2_9STRA4.560e-3168.67PITH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A024TZP3_9STRA4.140e-2557.83PITH domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A6S9JQ99_HETAK4.510e-2560.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1V9Z8E4_9STRA6.320e-2557.83Thioredoxin-like protein n=1 Tax=Achlya hypogyna T... [more]
A0A024U1J9_9STRA6.480e-2557.83PITH domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A067C2U1_SAPPC5.220e-2455.42PITH domain-containing protein n=3 Tax=Saprolegnia... [more]
A0A1V9ZC31_9STRA7.210e-2454.22PITH domain-containing protein n=1 Tax=Thraustothe... [more]
W7TWZ4_9STRA9.750e-2455.42Thioredoxin-like protein 1 n=3 Tax=Monodopsidaceae... [more]
A0A6G0XIK8_9STRA1.220e-2251.81PITH domain-containing protein n=2 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69851contigEcto-sp13_S_contig69851:47..671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score144.8
Seed ortholog evalue1.6e-32
Seed eggNOG ortholog2880.D8LNE4
Model size249
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748
Exons2
EggNOG free text desc.protein-disulfide reductase activity
EggNOG OGsKOG0908@1,KOG0908@2759
Ec32 ortholog descriptionGalactose-binding domain-like
Ec32 orthologEc-04_004160.1
Cds size222
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463957.5526514-CDS-Ecto-sp13_S_contig69851:46..2191681463957.5526514-CDS-Ecto-sp13_S_contig69851:46..219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69851 47..219 -
1681463957.5719821-CDS-Ecto-sp13_S_contig69851:595..6441681463957.5719821-CDS-Ecto-sp13_S_contig69851:595..644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69851 596..644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463957.5832613-UTR-Ecto-sp13_S_contig69851:644..6711681463957.5832613-UTR-Ecto-sp13_S_contig69851:644..671Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig69851 645..671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69851.17999.1prot_Ecto-sp13_S_contig69851.17999.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69851 47..644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69851.17999.1

>prot_Ecto-sp13_S_contig69851.17999.1 ID=prot_Ecto-sp13_S_contig69851.17999.1|Name=mRNA_Ecto-sp13_S_contig69851.17999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
METVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTK
EDLVAGSASVLKFVKFQRVSGLSV
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mRNA from alignment at Ecto-sp13_S_contig69851:47..671-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69851.17999.1 ID=mRNA_Ecto-sp13_S_contig69851.17999.1|Name=mRNA_Ecto-sp13_S_contig69851.17999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=625bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69851:47..671- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCAATTGCTCTTGCATGTGGGCTTCATGGAGACTGTGAAGCTACACTC
GATAGATTTCGTCGCCCCTTCGGACGGTGAGTTGCTTGGCGAGCCAAACA
CACCTGTAGGGGTAATATGCCATGGCAACGCCCAGCCGTGCTGTTTATTA
TCTTTCCAAAGCGCCGTATATGATTGTTGAAAATATCATCATTGATGGAG
GAACCGTGGCATTTGTCTTGTGTTTCCTGGGCCGCTGACTGTCCGTAATG
CGTTCGGAGGCTGTTCACGAAAGAGTTTCGAAAACATTTGTTACCTCACC
GCTCCCATTGCTTGTAAGGGTTGAGTGCACTACGATCAAACACCAGGACA
CGATTTATACTGACTGCAACCCTTACGGCCCAGAGGCCTGACTCCCACCC
CACCCCATCCCTCTTCTCTGTACATGATCACTCTGTCGGCCTACCAATCA
AGACACGGCTCCATTGACGGTGAAACTCTACCTCAACCGGAACAGCATGG
GATTCAGCGACACGGACGACATGGCGCCCGCGCAAACGTTGGAGCTGACG
AAGGAAGATTTGGTGGCCGGTTCAGCGTCTGTGCTGAAGTTCGTTAAGTT
TCAAAGGGTCTCCGGCCTTTCGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69851:47..671-

>mRNA_Ecto-sp13_S_contig69851.17999.1 ID=mRNA_Ecto-sp13_S_contig69851.17999.1|Name=mRNA_Ecto-sp13_S_contig69851.17999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69851:47..671- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGACTGTGAAGCTACACTCGATAGATTTCGTCGCCCCTTCGGACGA
CACGGCTCCATTGACGGTGAAACTCTACCTCAACCGGAACAGCATGGGAT
TCAGCGACACGGACGACATGGCGCCCGCGCAAACGTTGGAGCTGACGAAG
GAAGATTTGGTGGCCGGTTCAGCGTCTGTGCTGAAGTTCGTTAAGTTTCA
AAGGGTCTCCGGCCTTTCGGTG
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