prot_Ecto-sp13_S_contig6985.17997.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6985.17997.1
Unique Nameprot_Ecto-sp13_S_contig6985.17997.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length127
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6985.17997.1 vs. uniprot
Match: A0A6H5JJV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.330e-18
Identity = 84/105 (80.00%), Postives = 89/105 (84.76%), Query Frame = 0 
Query:   23 MDRVKLSASQTATAKRRQQLVLGRSSQRSRLQCPLLRALAAALVYLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGVPRGRHQGRRQQSGTRE 127
            M+RVK +ASQT + KRRQQL+LGRSSQRSRLQ PLLRALAAALVYLAT    XXXXXXXXXXXXXXXXXXXXXXXXXXX       VGVPRGRHQ RR+QSGTRE
Sbjct:    1 MERVKPTASQTPSGKRRQQLLLGRSSQRSRLQWPLLRALAAALVYLATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAAGSGVGVPRGRHQERRKQSGTRE 105
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BLAST of mRNA_Ecto-sp13_S_contig6985.17997.1 vs. uniprot
Match: D7FSV6_ECTSI (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV6_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 6.530e-7
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0 
Query:   23 MDRVKLSASQTATAKRRQQLVLGRSSQRSRLQCPLLRALAAALVYLAT 70
            M+RVK +ASQTAT K    L+  RSSQRSRLQ PLLRALAAALVYLAT
Sbjct:    1 MERVKPTASQTATRK----LLRARSSQRSRLQWPLLRALAAALVYLAT 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6985.17997.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJV0_9PHAE5.330e-1880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSV6_ECTSI6.530e-775.00Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..55
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..77
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 78..127
NoneNo IPR availableTMHMMTMhelixcoord: 55..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6985contigEcto-sp13_S_contig6985:235..980 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6985.17997.1mRNA_Ecto-sp13_S_contig6985.17997.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6985 235..980 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6985.17997.1 ID=prot_Ecto-sp13_S_contig6985.17997.1|Name=mRNA_Ecto-sp13_S_contig6985.17997.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
RRCRARQRELSAATPLYSDGDRMDRVKLSASQTATAKRRQQLVLGRSSQR
SRLQCPLLRALAAALVYLATATGAAAASTTPAARLRLNGSGSSSQQRRGA
RPAAAGSGVGVPRGRHQGRRQQSGTRE
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