mRNA_Ecto-sp13_S_contig6985.17997.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6985.17997.1
Unique NamemRNA_Ecto-sp13_S_contig6985.17997.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6985.17997.1 vs. uniprot
Match: A0A6H5JJV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.330e-18
Identity = 84/105 (80.00%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:   67 MDRVKLSASQTATAKRRQQLVLGRSSQRSRLQCPLLRALAAALVYLATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGVPRGRHQGRRQQSGTRE 381
            M+RVK +ASQT + KRRQQL+LGRSSQRSRLQ PLLRALAAALVYLAT    XXXXXXXXXXXXXXXXXXXXXXXXXXX       VGVPRGRHQ RR+QSGTRE
Sbjct:    1 MERVKPTASQTPSGKRRQQLLLGRSSQRSRLQWPLLRALAAALVYLATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAAGSGVGVPRGRHQERRKQSGTRE 105
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6985.17997.1 vs. uniprot
Match: D7FSV6_ECTSI (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV6_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 6.530e-7
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   67 MDRVKLSASQTATAKRRQQLVLGRSSQRSRLQCPLLRALAAALVYLAT 210
            M+RVK +ASQTAT K    L+  RSSQRSRLQ PLLRALAAALVYLAT
Sbjct:    1 MERVKPTASQTATRK----LLRARSSQRSRLQWPLLRALAAALVYLAT 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6985.17997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJV0_9PHAE5.330e-1880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSV6_ECTSI6.530e-775.00Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6985contigEcto-sp13_S_contig6985:235..980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size381
Hectar predicted targeting categorysignal anchor
Exons2
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463957.4097195-CDS-Ecto-sp13_S_contig6985:234..5341681463957.4097195-CDS-Ecto-sp13_S_contig6985:234..534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6985 235..534 -
1681463957.427768-CDS-Ecto-sp13_S_contig6985:899..9801681463957.427768-CDS-Ecto-sp13_S_contig6985:899..980Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6985 900..980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6985.17997.1prot_Ecto-sp13_S_contig6985.17997.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6985 235..980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6985.17997.1

>prot_Ecto-sp13_S_contig6985.17997.1 ID=prot_Ecto-sp13_S_contig6985.17997.1|Name=mRNA_Ecto-sp13_S_contig6985.17997.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
RRCRARQRELSAATPLYSDGDRMDRVKLSASQTATAKRRQQLVLGRSSQR
SRLQCPLLRALAAALVYLATATGAAAASTTPAARLRLNGSGSSSQQRRGA
RPAAAGSGVGVPRGRHQGRRQQSGTRE
back to top

mRNA from alignment at Ecto-sp13_S_contig6985:235..980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6985.17997.1 ID=mRNA_Ecto-sp13_S_contig6985.17997.1|Name=mRNA_Ecto-sp13_S_contig6985.17997.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=746bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6985:235..980- (Ectocarpus species13 EcNAP12_S_4_19m)
CGACGCTGTAGAGCACGGCAGAGGGAGCTATCTGCGGCCACTCCGCTGTA
CTCGGACGGAGATAGGATGGATCGAGTCAAGGTATGTCTCGTCGTACCGA
GCAGACATGCGCCGACTTGCGTGGCGTAGAAGTACAGGACTTGCTGTCAG
CATCTGTTCGAAAGTGCAATATAGTTCGCATTCTCAAGGTCTGTTTCCTC
TTCCCAGAGCGTGGGAACACGACGGTCAATAGAGCTGCTGTGTCATGACG
ATGTGTGTACGCGAGTCGGGGCGTGTACACGCTACGAGACGCAACCATTC
GTCTACACGAGCTTCCTTCGACACACCCGGTGACCATTCGCGGTCCGTGG
CCGAAGCTTTTGCATACAAACATACACAGCAGCAGCACGCGCACCCCTAG
ATTTGAAGCATTTTACAACCGCACTTTTGCCGCGTGTGCCCAGCAGCTTT
CAGCATCGCAGACCGCCACTGCGAAGCGGAGACAACAGCTCGTTCTGGGG
CGGTCCTCGCAGCGCAGCCGTCTGCAGTGCCCCCTCCTCCGCGCCCTGGC
CGCGGCGCTGGTCTACTTAGCCACTGCCACGGGGGCTGCGGCGGCCAGCA
CAACACCGGCGGCGAGGCTGCGACTGAACGGCAGCGGCAGCAGCAGCCAG
CAACGGCGAGGGGCTCGCCCCGCCGCCGCCGGCAGCGGTGTTGGTGTTCC
TAGAGGCCGCCATCAAGGGCGACGACAGCAGTCGGGGACCAGAGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6985:235..980-

>mRNA_Ecto-sp13_S_contig6985.17997.1 ID=mRNA_Ecto-sp13_S_contig6985.17997.1|Name=mRNA_Ecto-sp13_S_contig6985.17997.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6985:235..980- (Ectocarpus species13 EcNAP12_S_4_19m)
CGACGCTGTAGAGCACGGCAGAGGGAGCTATCTGCGGCCACTCCGCTGTA
CTCGGACGGAGATAGGATGGATCGAGTCAAGCTTTCAGCATCGCAGACCG
CCACTGCGAAGCGGAGACAACAGCTCGTTCTGGGGCGGTCCTCGCAGCGC
AGCCGTCTGCAGTGCCCCCTCCTCCGCGCCCTGGCCGCGGCGCTGGTCTA
CTTAGCCACTGCCACGGGGGCTGCGGCGGCCAGCACAACACCGGCGGCGA
GGCTGCGACTGAACGGCAGCGGCAGCAGCAGCCAGCAACGGCGAGGGGCT
CGCCCCGCCGCCGCCGGCAGCGGTGTTGGTGTTCCTAGAGGCCGCCATCA
AGGGCGACGACAGCAGTCGGGGACCAGAGAG
back to top