mRNA_Ecto-sp13_S_contig69845.17996.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69845.17996.1
Unique NamemRNA_Ecto-sp13_S_contig69845.17996.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69845.17996.1 vs. uniprot
Match: A0A6H5KG96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG96_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.200e-35
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 AGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDTGKLHAFGYQV 180
            AGRLFALCEGGLPYALRVMCDGVIETIG+ATFDGQMKAPFTAHPKKDPDTGKLHAFGYQV
Sbjct:  157 AGRLFALCEGGLPYALRVMCDGVIETIGKATFDGQMKAPFTAHPKKDPDTGKLHAFGYQV 216
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BLAST of mRNA_Ecto-sp13_S_contig69845.17996.1 vs. uniprot
Match: D8LGA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA3_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 6.110e-34
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 AGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDTGKLHAFGYQ 177
            AGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDTGKLHAFGYQ
Sbjct:  158 AGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDTGKLHAFGYQ 216
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BLAST of mRNA_Ecto-sp13_S_contig69845.17996.1 vs. uniprot
Match: A0A6H5KSQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSQ0_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 2.020e-33
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 AGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDTGKLHAFGYQ 177
            AGRLFALCEGGLPYALRVMCDGVIETIGQ TFDGQMKAPFTAHPKKDPDTGKLHAFGYQ
Sbjct:  170 AGRLFALCEGGLPYALRVMCDGVIETIGQTTFDGQMKAPFTAHPKKDPDTGKLHAFGYQ 228
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BLAST of mRNA_Ecto-sp13_S_contig69845.17996.1 vs. uniprot
Match: D8LGA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA2_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.650e-32
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 AGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDTGKLHAFGYQ 177
            AGRLFALCEGGLPYALRVMCDGVIETIG+ATFDGQMKAPFTAHPKKDPDTGKL+AFGYQ
Sbjct:  158 AGRLFALCEGGLPYALRVMCDGVIETIGKATFDGQMKAPFTAHPKKDPDTGKLYAFGYQ 216
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BLAST of mRNA_Ecto-sp13_S_contig69845.17996.1 vs. uniprot
Match: D8LPR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR0_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.320e-23
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 AGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDTGKLHAFGYQV 180
            AGRL AL E G+PYALRVMCDGVIET+G+ +F+G+++ PFTAHPKKDP TGKL+ FGYQ+
Sbjct:  161 AGRLMALQEAGVPYALRVMCDGVIETLGRTSFEGKLETPFTAHPKKDPATGKLYGFGYQM 220
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BLAST of mRNA_Ecto-sp13_S_contig69845.17996.1 vs. uniprot
Match: A0A835YZ25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ25_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.530e-21
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 AGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDTGKLHAFGYQV 180
            AGRL AL E   PYALRV+CDGVIETIG  T+DG++K PFTAHPK DP T  ++AFGYQV
Sbjct: 1865 AGRLLALHEADTPYALRVLCDGVIETIGSVTYDGKLKTPFTAHPKVDPATSIMYAFGYQV 1924
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BLAST of mRNA_Ecto-sp13_S_contig69845.17996.1 vs. uniprot
Match: E1ZBB7_CHLVA (Uncharacterized protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZBB7_CHLVA)

HSP 1 Score: 85.5 bits (210), Expect = 4.960e-18
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 AGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDTGKLHAFGYQV 180
            AGRL AL E  LPY+LR+ C G++ET+G+ TF GQ++  FTAHPK+DP+TG+L  FGY V
Sbjct:  135 AGRLLALQEADLPYSLRIACSGLVETVGRVTFGGQVQHAFTAHPKRDPETGELFYFGYSV 194
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BLAST of mRNA_Ecto-sp13_S_contig69845.17996.1 vs. uniprot
Match: A0A8J9RH61_9CHLO (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RH61_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 3.310e-17
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 AGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDTGKLHAFGYQV 180
            A +L AL EG LPYALR++CDGV++T+G+ TF  +++ PFTAHPK DP TG+L   GYQ+
Sbjct:  182 ANKLLALHEGDLPYALRILCDGVVDTLGRLTFGNKVRHPFTAHPKPDPVTGELFFIGYQM 241
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BLAST of mRNA_Ecto-sp13_S_contig69845.17996.1 vs. uniprot
Match: I0YMZ4_COCSC (Carotenoid oxygenase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YMZ4_COCSC)

HSP 1 Score: 82.8 bits (203), Expect = 4.520e-17
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 AGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDTGKLHAFGYQV 180
            A +L AL EG LPYALR++C+G+++T+G+ TF G++  PFTAHPK DP TG+L   GYQ+
Sbjct:  182 ANKLLALHEGDLPYALRILCNGIVDTLGRLTFGGKVNHPFTAHPKVDPITGELFFIGYQI 241
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BLAST of mRNA_Ecto-sp13_S_contig69845.17996.1 vs. uniprot
Match: A0A5J4XKX1_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XKX1_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 6.220e-17
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 AGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDTGKLHAFGYQV 180
            A +L  L EG LPYA+R +C+GVIET+G+  ++G++K PFTAHPK DP TG+L  FGY V
Sbjct:  194 ANKLLVLHEGDLPYAVRALCNGVIETMGRVNYEGKIKHPFTAHPKIDPQTGELFFFGYNV 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69845.17996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG96_9PHAE2.200e-3598.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGA3_ECTSI6.110e-34100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSQ0_9PHAE2.020e-3398.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGA2_ECTSI1.650e-3296.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPR0_ECTSI2.320e-2371.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YZ25_9STRA7.530e-2170.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
E1ZBB7_CHLVA4.960e-1860.00Uncharacterized protein (Fragment) n=1 Tax=Chlorel... [more]
A0A8J9RH61_9CHLO3.310e-1758.33Carotenoid 9,10(9',10')-cleavage dioxygenase 1 n=1... [more]
I0YMZ4_COCSC4.520e-1756.67Carotenoid oxygenase n=1 Tax=Coccomyxa subellipsoi... [more]
A0A5J4XKX1_9CHLO6.220e-1758.33Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69845contigEcto-sp13_S_contig69845:39..218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score130.6
Seed ortholog evalue2.5e-28
Seed eggNOG ortholog2880.D8LGA3
Preferred nameCCD1
Model size180
KEGG koko:K00465,ko:K11159
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005911,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008300,GO:0009056,GO:0009506,GO:0009987,GO:0010436,GO:0012505,GO:0016020,GO:0016042,GO:0016108,GO:0016110,GO:0016115,GO:0016116,GO:0016118,GO:0016119,GO:0016121,GO:0016122,GO:0016124,GO:0016491,GO:0016701,GO:0016702,GO:0030054,GO:0031090,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045549,GO:0046247,GO:0051213,GO:0055044,GO:0055114,GO:0071704,GO:0071944,GO:0098588,GO:0098805,GO:1901575
Exons1
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGsCOG3670@1,KOG1285@2759
Cds size180
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463957.3723881-CDS-Ecto-sp13_S_contig69845:38..2181681463957.3723881-CDS-Ecto-sp13_S_contig69845:38..218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69845 39..218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69845.17996.1prot_Ecto-sp13_S_contig69845.17996.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69845 39..218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69845.17996.1

>prot_Ecto-sp13_S_contig69845.17996.1 ID=prot_Ecto-sp13_S_contig69845.17996.1|Name=mRNA_Ecto-sp13_S_contig69845.17996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
AGRLFALCEGGLPYALRVMCDGVIETIGQATFDGQMKAPFTAHPKKDPDT
GKLHAFGYQV
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mRNA from alignment at Ecto-sp13_S_contig69845:39..218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69845.17996.1 ID=mRNA_Ecto-sp13_S_contig69845.17996.1|Name=mRNA_Ecto-sp13_S_contig69845.17996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69845:39..218+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGTCGTCTCTTCGCGCTATGTGAGGGAGGTCTTCCATACGCCCTCCG
CGTCATGTGTGACGGAGTGATTGAGACGATCGGTCAGGCTACTTTCGACG
GCCAGATGAAGGCACCGTTCACGGCTCACCCTAAGAAAGACCCGGACACT
GGCAAGCTGCACGCGTTTGGCTACCAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69845:39..218+

>mRNA_Ecto-sp13_S_contig69845.17996.1 ID=mRNA_Ecto-sp13_S_contig69845.17996.1|Name=mRNA_Ecto-sp13_S_contig69845.17996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69845:39..218+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGTCGTCTCTTCGCGCTATGTGAGGGAGGTCTTCCATACGCCCTCCG
CGTCATGTGTGACGGAGTGATTGAGACGATCGGTCAGGCTACTTTCGACG
GCCAGATGAAGGCACCGTTCACGGCTCACCCTAAGAAAGACCCGGACACT
GGCAAGCTGCACGCGTTTGGCTACCAGGTA
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