mRNA_Ecto-sp13_S_contig12116.1799.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12116.1799.1
Unique NamemRNA_Ecto-sp13_S_contig12116.1799.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12116.1799.1 vs. uniprot
Match: D8LJU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU1_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.190e-30
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:   70 MTQRLKLLHEEKTALSSDLRTLSATRSSSSTVRLVAADNAMAAMATSGIVGVFAGVALARFLAARRGRSRLSRRQ 294
            MTQRLKLLHEEKTALSS+LRTLSA  SSSSTVRLVAADNAMAAM TSGI+GVFAG ALARFLAARRGRSRLSRRQ
Sbjct:    1 MTQRLKLLHEEKTALSSELRTLSAKGSSSSTVRLVAADNAMAAMVTSGIIGVFAGGALARFLAARRGRSRLSRRQ 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12116.1799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJU1_ECTSI1.190e-3092.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12116contigEcto-sp13_S_contig12116:1845..3648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size297
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_000120.1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462644.3390749-CDS-Ecto-sp13_S_contig12116:1844..18991681462644.3390749-CDS-Ecto-sp13_S_contig12116:1844..1899Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12116 1845..1899 +
1681462644.3478422-CDS-Ecto-sp13_S_contig12116:2531..26431681462644.3478422-CDS-Ecto-sp13_S_contig12116:2531..2643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12116 2532..2643 +
1681462644.3558743-CDS-Ecto-sp13_S_contig12116:3518..36481681462644.3558743-CDS-Ecto-sp13_S_contig12116:3518..3648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12116 3519..3648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12116.1799.1prot_Ecto-sp13_S_contig12116.1799.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12116 1845..3648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12116.1799.1

>prot_Ecto-sp13_S_contig12116.1799.1 ID=prot_Ecto-sp13_S_contig12116.1799.1|Name=mRNA_Ecto-sp13_S_contig12116.1799.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
MGGEVSATELERKDAEAQGLCHEMTQRLKLLHEEKTALSSDLRTLSATRS
SSSTVRLVAADNAMAAMATSGIVGVFAGVALARFLAARRGRSRLSRRQ*
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mRNA from alignment at Ecto-sp13_S_contig12116:1845..3648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12116.1799.1 ID=mRNA_Ecto-sp13_S_contig12116.1799.1|Name=mRNA_Ecto-sp13_S_contig12116.1799.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12116:1845..3648+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGGCGAGGTGTCGGCGACGGAGCTGGAGAGGAAAGATGCGGAGGC
GCAAGGTGGCTGTTTGTCAAAAGTTATCACTGGTCCCAAAGATGTTGGCT
GCATCATCAGTGTAGGTTGGTTGATGAGGCGTGGTGTTCTTTGATTCGTG
CACGCGCGGCAAAATAAAACTGCCAGCTGCCAGCTGGCAGTGTAGCCTAC
TGCTGGCAACCCATCACCGCTGCTGCTGCTTTAGGTTCGACGTCCATCGG
AACTGCTGTGTACCAGCTGAGTACTCTGTAGGATGTGCAAGGAACATTAT
GTGTTGGCAAGTATTGATTGGTCTTTTTGTATGTGTGAAATGTCTCTCTG
TGTTGTGCAACCAATAGGCAAGTTGTGTGCGTTCACTCCGTATATGATGT
GTTTATTGACTTCGACTGGCTTTTTTTATCGTTTTGTCGTTGAAGCACGG
GGACCGGACACGTACATACCCCAAGCATGCGGAGACCTAAATTGTTGCTG
GGCGTGGTTGGAACGGCAGTCGTGAGCGTTCATACAGGCCTCAGTGTATC
GACTACATGCAGCAGTCAGCATAAATACATGCACACCCCTGCGCACGTAG
ACTCAGAATTTCAAATCATCCACGAAGCATGTCTATCTCCTGTTTGAATC
AGTTTCCCGCGATCCATCTTCACCAACGTGTGCATAGGACTGTGCCATGA
AATGACCCAACGGCTGAAACTACTGCACGAAGAGAAGACCGCCCTCTCCT
CCGACCTGAGAACGCTGTCTGCGACCAGGTCTTCATCGTCAACAGTCAGG
TATGTTGCTTGCCTACACGCCGCTTTGTGCTTTGTACCGTTGTACATATG
GATGATCTTACGAAAGGTGACAAAAGACACTGCACATCCCCCGGCCGATT
TTCGCAGCTCGGTTACTCCGAAGCACAGACAGCAGTGTCGGTATCGCATG
CATACCAACAGGCAGCGTTGGAACCGTCTCACCGAGAGCTTTCCGAAAAC
GTGCAAGATGTTTTGAATCCTCTTCGTCGTCGAGTTGTAACGGAGCATTG
AAAATCGCTCCGGGTGTGTGTGTGGTATCTTGCGTCACGTCAAGTGTAGT
CCACACAACAGCAGCACACACGTAGTTTACAGATAATTTCGACGGACTTA
TGTACCACACGAGCATCATGTACAGACGTCCGCTACAAAGGTACTAACAT
GGAGTCATTGAATTTGGAGTACAAGCGTAAAGTAGTTGCAGACCTTTTTC
CACCGGCCGCCAAAATTGAAAACCACCTCTTCTACAAGTTCGATCGGACC
AACAACCTACATCATGTCGATGTCAACTTGCCATCTTTTCGAGGAACATA
TCAACACTTGAAGGAATGGCGGCGACAAACCTCTTCTCTCTTTGACACCT
CACGGCTGCGGCACCACCTGTACTCTGCACGTACATGTGTGAGCGTTGTT
CCATTGGTCCTACATGGCTCTCGGAGCGTGTTTCAAAATGTATGATGTAG
TCACACAGAGGAAGGAATTCTCGCTCGAGACCAAAATCTCAGAGAGGATG
CGTTGAATCTTTGCGGCGACCCTTGAGTGCCTCCTACTTACTCCTACTAC
GTGTGCCCGCTGCAACTGACGGCAAAACGTTTGTTTGTCGGCAATGGGTG
CGCGACACTAACACCACGAAACAGACTGGTCGCTGCGGACAATGCGATGG
CGGCGATGGCGACTTCCGGAATCGTCGGGGTGTTCGCAGGAGTGGCCCTG
GCAAGGTTTCTAGCTGCGAGGAGAGGGAGGAGCCGTTTGAGCCGTCGACA
ATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12116:1845..3648+

>mRNA_Ecto-sp13_S_contig12116.1799.1 ID=mRNA_Ecto-sp13_S_contig12116.1799.1|Name=mRNA_Ecto-sp13_S_contig12116.1799.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12116:1845..3648+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGGCGAGGTGTCGGCGACGGAGCTGGAGAGGAAAGATGCGGAGGC
GCAAGGACTGTGCCATGAAATGACCCAACGGCTGAAACTACTGCACGAAG
AGAAGACCGCCCTCTCCTCCGACCTGAGAACGCTGTCTGCGACCAGGTCT
TCATCGTCAACAGTCAGACTGGTCGCTGCGGACAATGCGATGGCGGCGAT
GGCGACTTCCGGAATCGTCGGGGTGTTCGCAGGAGTGGCCCTGGCAAGGT
TTCTAGCTGCGAGGAGAGGGAGGAGCCGTTTGAGCCGTCGACAATAA
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