mRNA_Ecto-sp13_S_contig698.17988.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig698.17988.1
Unique NamemRNA_Ecto-sp13_S_contig698.17988.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig698.17988.1 vs. uniprot
Match: D7FTW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW4_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 5.070e-5
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:  310 TIGKTTKEKLNGDVTTTFPPLVLSSS 387
            TIGKTTK+KLNGDVTTTFPPLVLSSS
Sbjct:  118 TIGKTTKKKLNGDVTTTFPPLVLSSS 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig698.17988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTW4_ECTSI5.070e-596.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig698contigEcto-sp13_S_contig698:10918..11305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size390
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.9225051-CDS-Ecto-sp13_S_contig698:10917..113041681463956.9225051-CDS-Ecto-sp13_S_contig698:10917..11304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig698 10918..11304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig698.17988.1prot_Ecto-sp13_S_contig698.17988.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig698 10918..11304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig698.17988.1

>prot_Ecto-sp13_S_contig698.17988.1 ID=prot_Ecto-sp13_S_contig698.17988.1|Name=mRNA_Ecto-sp13_S_contig698.17988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
KTHFCILPSRSSACPPNVCSLSFAWKQCVTRSIDRNECASWTEQWHVMSG
SFGPLLAVRRAMSPPFLGAISACTGTRCCMCSVQVSEGSVSVVFLSGSRV
CPQTIGKTTKEKLNGDVTTTFPPLVLSSS
back to top

mRNA from alignment at Ecto-sp13_S_contig698:10918..11305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig698.17988.1 ID=mRNA_Ecto-sp13_S_contig698.17988.1|Name=mRNA_Ecto-sp13_S_contig698.17988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=388bp|location=Sequence derived from alignment at Ecto-sp13_S_contig698:10918..11305+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAACGCATTTTTGCATCTTGCCTTCGCGTTCGTCCGCTTGCCCCCCAAA
CGTTTGTTCGCTAAGCTTTGCATGGAAACAATGTGTCACGCGTAGCATCG
ATCGAAACGAGTGTGCTTCGTGGACAGAACAGTGGCATGTCATGAGCGGT
TCTTTTGGGCCACTGCTGGCTGTCCGAAGAGCTATGTCCCCACCGTTCCT
GGGCGCAATATCTGCGTGTACAGGTACGCGTTGTTGCATGTGTTCGGTGC
AGGTTTCCGAGGGGTCCGTCTCTGTTGTTTTCCTCTCTGGCTCGCGTGTT
TGCCCGCAGACCATCGGCAAGACCACGAAGGAGAAGCTCAATGGAGACGT
GACGACCACCTTCCCCCCCCTCGTCCTCTCGTCGTCTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig698:10918..11305+

>mRNA_Ecto-sp13_S_contig698.17988.1 ID=mRNA_Ecto-sp13_S_contig698.17988.1|Name=mRNA_Ecto-sp13_S_contig698.17988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig698:10918..11305+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAACGCATTTTTGCATCTTGCCTTCGCGTTCGTCCGCTTGCCCCCCAAA
CGTTTGTTCGCTAAGCTTTGCATGGAAACAATGTGTCACGCGTAGCATCG
ATCGAAACGAGTGTGCTTCGTGGACAGAACAGTGGCATGTCATGAGCGGT
TCTTTTGGGCCACTGCTGGCTGTCCGAAGAGCTATGTCCCCACCGTTCCT
GGGCGCAATATCTGCGTGTACAGGTACGCGTTGTTGCATGTGTTCGGTGC
AGGTTTCCGAGGGGTCCGTCTCTGTTGTTTTCCTCTCTGGCTCGCGTGTT
TGCCCGCAGACCATCGGCAAGACCACGAAGGAGAAGCTCAATGGAGACGT
GACGACCACCTTCCCCCCCCTCGTCCTCTCGTCGTCT
back to top