mRNA_Ecto-sp13_S_contig69758.17985.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69758.17985.1
Unique NamemRNA_Ecto-sp13_S_contig69758.17985.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69758.17985.1 vs. uniprot
Match: D8LQK4_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQK4_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 7.100e-13
Identity = 37/99 (37.37%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:    1 DVDAGFVFCETAVEAWSPSPHSTSVDEKETDTFTLPGRSVISVDKTMRSITNTDGIDPTYSDAGDTATFDISITNTGDTRLNQLVLADEMFG-DSITCD 294
            D++AG+V     +E WSPSP +  V  K+ +T T+P +  IS++ T+ S++ ++G+D  YSD GD+ATF ++I NTG+  L+ +   + + G ++  CD
Sbjct:  169 DINAGYVHNTVILEGWSPSPGAVKVATKDAETVTVPRQMNISLESTLLSMSKSEGLDSAYSDEGDSATFQVTIANTGNAVLSSVKPTNWIVGSEAFNCD 267
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BLAST of mRNA_Ecto-sp13_S_contig69758.17985.1 vs. uniprot
Match: A0A849HKK8_9MICO (DUF11 domain-containing protein n=2 Tax=Knoellia sp. DB2414S TaxID=2730921 RepID=A0A849HKK8_9MICO)

HSP 1 Score: 50.8 bits (120), Expect = 3.890e-5
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 1 
Query:    1 DVDAGFVFCETAVEAWSPSPHSTSVDEKETDTFTLPGRSVISVDKTMRSITNTDGIDPTYSDAGDTATFDISITNTGDTRLNQLVLADEMFG 276
            D+DAG V   TA    +P   +T V +  T T TLP    I++DK     T + G   T +DAGDT T+ +++TNTG   L  + + DE  G
Sbjct: 3292 DLDAGVVR-NTATATATPPGGATPVTDDATATSTLPTSPGIAIDKVAGEPTVSGGRLGTTTDAGDTITYTLTVTNTGTVTLRDVEITDEKLG 3382
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69758.17985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQK4_ECTSI7.100e-1337.37N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A849HKK8_9MICO3.890e-538.04DUF11 domain-containing protein n=2 Tax=Knoellia s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69758contigEcto-sp13_S_contig69758:11..304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size294
Hectar predicted targeting categoryother localisation
Exons1
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.7940426-CDS-Ecto-sp13_S_contig69758:10..3041681463956.7940426-CDS-Ecto-sp13_S_contig69758:10..304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69758 11..304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69758.17985.1prot_Ecto-sp13_S_contig69758.17985.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69758 11..304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69758.17985.1

>prot_Ecto-sp13_S_contig69758.17985.1 ID=prot_Ecto-sp13_S_contig69758.17985.1|Name=mRNA_Ecto-sp13_S_contig69758.17985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
DVDAGFVFCETAVEAWSPSPHSTSVDEKETDTFTLPGRSVISVDKTMRSI
TNTDGIDPTYSDAGDTATFDISITNTGDTRLNQLVLADEMFGDSITCD
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mRNA from alignment at Ecto-sp13_S_contig69758:11..304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69758.17985.1 ID=mRNA_Ecto-sp13_S_contig69758.17985.1|Name=mRNA_Ecto-sp13_S_contig69758.17985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69758:11..304+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGTTGATGCTGGCTTCGTTTTCTGCGAGACTGCCGTCGAAGCGTGGTC
TCCATCTCCCCACTCGACATCAGTAGACGAAAAGGAGACGGACACCTTCA
CGCTGCCCGGAAGGTCGGTCATTTCGGTGGACAAGACTATGAGAAGTATC
ACCAATACGGACGGCATCGATCCGACATATAGCGACGCAGGCGACACGGC
CACCTTCGACATTTCCATCACAAATACGGGTGACACAAGACTGAACCAAC
TTGTGCTCGCTGATGAGATGTTCGGCGACAGCATCACGTGCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69758:11..304+

>mRNA_Ecto-sp13_S_contig69758.17985.1 ID=mRNA_Ecto-sp13_S_contig69758.17985.1|Name=mRNA_Ecto-sp13_S_contig69758.17985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69758:11..304+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGTTGATGCTGGCTTCGTTTTCTGCGAGACTGCCGTCGAAGCGTGGTC
TCCATCTCCCCACTCGACATCAGTAGACGAAAAGGAGACGGACACCTTCA
CGCTGCCCGGAAGGTCGGTCATTTCGGTGGACAAGACTATGAGAAGTATC
ACCAATACGGACGGCATCGATCCGACATATAGCGACGCAGGCGACACGGC
CACCTTCGACATTTCCATCACAAATACGGGTGACACAAGACTGAACCAAC
TTGTGCTCGCTGATGAGATGTTCGGCGACAGCATCACGTGCGAC
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