mRNA_Ecto-sp13_S_contig6975.17984.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6975.17984.1
Unique NamemRNA_Ecto-sp13_S_contig6975.17984.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6975.17984.1 vs. uniprot
Match: D8LGV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV8_ECTSI)

HSP 1 Score: 442 bits (1138), Expect = 7.890e-150
Identity = 262/308 (85.06%), Postives = 269/308 (87.34%), Query Frame = 1 
Query:    1 KAARSDQLEELENEHTKLFGDSLPLSTMPDSFNRAIRRALPALLPPAMAVFLTVSMPAVILLLKGVGTTLVAVAKGYGKADRWRSDDGHDVGSALEVGFGGGGXXXXDGVGRDGKRRERGLETPVSAFQMFLGGSGGSGDVHAXXXXXXXXXXXXXXXPVGDSPGAAAPVAPPLTVQQVSTERQGFFSKPRQQHPQLKNTGGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKEVESMRNELERASDDSRRXXXXXXXXXXXNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGEGNPSTQLSPA 924
            KAARSDQLEELENEHTKLFGDSLPLST+PDSFNRAIRRALP++LPPAMAVFLTVSMPAVILLLKGVGTTLVAVAKGYGKADR RSDDGHDVGSALEVGFGGGG      VG +GKRRERG ETP             SG V AXXXX           P+GDS G  AP APPLTVQQVSTERQGFFSKPRQQHPQLK+TGGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKEVESMRNELERASDDSRRXXXXXXXXXXXNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLG+GNPSTQLSPA
Sbjct:  307 KAARSDQLEELENEHTKLFGDSLPLSTLPDSFNRAIRRALPSVLPPAMAVFLTVSMPAVILLLKGVGTTLVAVAKGYGKADRRRSDDGHDVGSALEVGFGGGGGVFGGSVGGEGKRRERGPETPXXXXXXXXXXXXXSGGVDAXXXXHGGDVDTRAGGPMGDSSGGVAPFAPPLTVQQVSTERQGFFSKPRQQHPQLKDTGGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKEVESMRNELERASDDSRRXXXXXXXXXXXNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGQGNPSTQLSPA 614
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BLAST of mRNA_Ecto-sp13_S_contig6975.17984.1 vs. uniprot
Match: A0A6H5L0M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M1_9PHAE)

HSP 1 Score: 425 bits (1092), Expect = 2.800e-142
Identity = 266/358 (74.30%), Postives = 270/358 (75.42%), Query Frame = 1 
Query:    1 KAARSDQLEELENEHTKLFGDSLPLSTMPDSFNRAIRRALPALLPPAMAVFLTVSMPAVILLLKGVGTTLVAVAKGYGKADRWRSDDGHDVGSALEV---------------------------GFGGGGXXXXDGVGRDGKRRERGLETPVSAFQMFLGGSGGSGDVHAXXXXXXXXXXXXXXXPVGDSPGAAAPVAPPLTVQQVSTERQGFFSKPRQQHPQLKNTGGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKE-----------------------VESMRNELERASDDSRRXXXXXXXXXXXNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGEGNPSTQLSPA 924
            KAAR DQLEELENEHTKLFGDSLPLSTMPDSFNRAIRRALPALLPPA+AVFLTVSMPAVILLLKGVGTTLVAVAKGYGKADR RSDDGHDVGSALEV                           GFGGG XXXX      GKRRERG ETP+SAFQMFLGGSGGSG V A XXXXXXX       PVGDSPGA AP APP TV   STERQGFFSKPRQQ PQLK+TGGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKE                       VESMR+ELERASDDSRR           NRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGEGNPSTQLSPA
Sbjct:  306 KAARPDQLEELENEHTKLFGDSLPLSTMPDSFNRAIRRALPALLPPALAVFLTVSMPAVILLLKGVGTTLVAVAKGYGKADRRRSDDGHDVGSALEVANQIVGLQLAHVCGWYPMDLGQEVAQVGFGGGXXXXXXXXXXXGKRRERGPETPLSAFQMFLGGSGGSGGVDAGXXXXXXXVDTKAGGPVGDSPGAVAPFAPPSTV---STERQGFFSKPRQQPPQLKDTGGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKEAECTRSWPFTKGGREKGKRDPPQVESMRSELERASDDSRRLTDKLCRLEEDNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGEGNPSTQLSPA 660
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6975.17984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGV8_ECTSI7.890e-15085.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0M1_9PHAE2.800e-14274.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6975contigEcto-sp13_S_contig6975:3..4272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size927
Hectar predicted targeting categorysignal anchor
Exons7
Cds size927
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6975.17984.1prot_Ecto-sp13_S_contig6975.17984.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6975 3..4272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.6977973-CDS-Ecto-sp13_S_contig6975:2..381681463956.6977973-CDS-Ecto-sp13_S_contig6975:2..38Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6975 3..38 +
1681463956.7085307-CDS-Ecto-sp13_S_contig6975:946..11091681463956.7085307-CDS-Ecto-sp13_S_contig6975:946..1109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6975 947..1109 +
1681463956.7213726-CDS-Ecto-sp13_S_contig6975:1529..16181681463956.7213726-CDS-Ecto-sp13_S_contig6975:1529..1618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6975 1530..1618 +
1681463956.7303853-CDS-Ecto-sp13_S_contig6975:1955..21921681463956.7303853-CDS-Ecto-sp13_S_contig6975:1955..2192Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6975 1956..2192 +
1681463956.7397542-CDS-Ecto-sp13_S_contig6975:2727..29011681463956.7397542-CDS-Ecto-sp13_S_contig6975:2727..2901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6975 2728..2901 +
1681463956.7503126-CDS-Ecto-sp13_S_contig6975:3748..38981681463956.7503126-CDS-Ecto-sp13_S_contig6975:3748..3898Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6975 3749..3898 +
1681463956.7620895-CDS-Ecto-sp13_S_contig6975:4194..42721681463956.7620895-CDS-Ecto-sp13_S_contig6975:4194..4272Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6975 4195..4272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6975.17984.1

>prot_Ecto-sp13_S_contig6975.17984.1 ID=prot_Ecto-sp13_S_contig6975.17984.1|Name=mRNA_Ecto-sp13_S_contig6975.17984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp
KAARSDQLEELENEHTKLFGDSLPLSTMPDSFNRAIRRALPALLPPAMAV
FLTVSMPAVILLLKGVGTTLVAVAKGYGKADRWRSDDGHDVGSALEVGFG
GGGVGVGDGVGRDGKRRERGLETPVSAFQMFLGGSGGSGDVHAGGSGHGG
DVDTRAGGPVGDSPGAAAPVAPPLTVQQVSTERQGFFSKPRQQHPQLKNT
GGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKEVESMRNELERASDDSRR
LTDKLCRLEEDNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGEGN
PSTQLSPA*
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mRNA from alignment at Ecto-sp13_S_contig6975:3..4272+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6975.17984.1 ID=mRNA_Ecto-sp13_S_contig6975.17984.1|Name=mRNA_Ecto-sp13_S_contig6975.17984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6975:3..4272+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCTGCTCGTTCGGACCAACTTGAGGAGCTGGAAGTGAGTCCCATGTC
ATTTTCCTTTGCCACAACCAGTGCCAGCATGCCATCGGCAACCGTGGTTT
CACCTGCACCCGATGGTGACACGACATGTGGTGGGCTGTTCTTGTACGAA
GTATCTCTTTCATGATTCAGTGAATGTTGTATCGACTCTGTGCAAATAAA
GGTGAACCGTCAAGGCCTTACGACAGAAGTTTTCAGGGGCTGTTGTCCGT
AGTTACCAATGAAAGGGTGTTAGATGAAGGCACTCAGTCAGCGTGAGTAG
CATAGTGGATAAGCCTTTCGTTGCAAAAAATGCACGCCCGGAGTCGGATC
CCGGCTGGATCATATTTGAAACACCCTAGCTACTTTGTCAGCAGCGCTGG
GCGAGGAGTCCGGCCCCGGAGGAGATTCCTATCACCCACAGATCCAGCTG
GGAGGCTAAGAACCTACGAGTATATCATCTGTTAGAAGAAGGCGTATCCA
CCATGCTACTCAGTCAGTTGAGAAGGCTTATCCACTATGCTATTCAATCA
GTCGACTGACTGAGGAGCATAACTAGCTAAGTAGCATAGTGGATAAACCT
TCTTCTAACAAAGGGAAACCGATAGCGGGGGGATGCCCAACAATAGTCGG
AGCCCCATCACCTATATCAACACACGCGTGCGCTTACTCTTCGGCCTCGG
TGCATCTTACACTCGTCCGAACAGCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCTGTGTGGGCATGCCTCTCCTTCTTACGAAGTTCTCG
AACTAAACCTTTCAAGCCATGTCATGCCTGTCTCTTCGCTTCTCGAAAAC
GGACACGATAGTACTTATTTTCCTCGTCGTTAGTGCCCCATACTGAGAGC
CTCCCACTGAGCATATTTTCGAACCCCGCGTCTTCGACTAACAGAACGAG
CACACCAAGCTGTTCGGAGATTCCCTGCCGCTATCCACCATGCCGGACAG
CTTCAATCGCGCCATCAGGAGAGCACTCCCGGCCCTGCTCCCGCCGGCGA
TGGCGGTGTTCCTCACCGTGTCCATGCCGGCAGTGATACTGCTGCTGAAA
GGAGTAGGTAGGTGGGGGCGATAGCGTGTGCTCTGTAAACGGAGCGGTCG
CTGGCTGACCGGGCCGCGCTCAATTTTCCTAGTTCACGAGGCACACCCCT
CGCCCTTCGAGCTCTGTTGGCGCGTGGCTTTCGGTGTGCCTGGAAAATCA
ACCGCACGAGTCTACAGGTTCGAGCAAAACTCCCCATCATGGTGGATGAA
TATCCGTCACCGCTGCTTCTTGGACAAGGGCGTGTAACAGATGGAACAGC
GACGGCGCGCCGCGTGAACGCTTGCCACACGCTAGATCGACACGTCTCGT
TTCGTTTCGGAAGCTTTTTGGCGATCGCCTTTAAGACCAAGAACCCATCG
TGGCACTGCTACGTACCAACACTTTGGAGGCAGAGGTTCAACGTATTACA
CACGCTTTATATTAATAAACGCCTCAGGCACTACGCTGGTGGCTGTCGCG
AAAGGCTACGGGAAGGCAGACCGGTGGCGCTCAGACGACGGACACGACGT
TGGTTCCGCCCTGGAGGTAACTAACCAAAGATCCGGCTTACAACTCGCGC
ACGTGTGTGGTTGGTACCCGACGGATCTCGGGCAAAGTTGTCCAAGTAAT
TGCCCTTGGCGACAAGATGGTCTTCCACGAAAACAAAATCTACAGCCTGG
TCATATTTGAATACATACCCGGTGCCGAGCACGTGGACCGCCGACGAGCT
GGGGAAATCAACGAGCGGGCCAATGGAATCGCGTTCGGTTAGCGACTCAC
CGCTTGCCTTCCAGGCGCTAAATTAGCCGACGTTTGCGTAACGTCATCCT
CACGATATAACAGCAGTATCAACCGCCATGTATCTATCACGATTTTTTTT
CAGGTCGGCTTCGGTGGTGGTGGCGTTGGTGTTGGTGATGGAGTTGGCCG
TGACGGGAAACGCCGTGAACGAGGACTGGAAACCCCCGTTTCGGCCTTCC
AAATGTTTCTCGGAGGGAGTGGTGGCAGTGGTGACGTTCATGCGGGCGGA
AGCGGACACGGTGGTGATGTGGATACCAGGGCGGGCGGTCCTGTGGGGGA
CAGTCCCGGGGCAGCCGCGCCGGTCGCGCCCCCTTTGACGGTGAGGAAAC
TTGCGGTGTTTTGCTACGGTCATGTGGAGGAGGCTGGCACGGCTGTCGCC
GTACAAGTTTCTAGTGGTTGATGTGCCTTCGCCAAACAACCGCAAAGAAA
AGCACGTTGAAGGTTGGATTTTCGTACCGGCAAGGCTTAAAACTACATGC
CCTCCGAATTTTTCAGTAATATATTCCCTTTCAGGGTAGCGGTGTAAATT
CTTGTCGGGTTTTTCGAGCAGGCATTGCCAGAACCTCTCACGGTCGACTC
GACTGCAACAACAAGGGTATTTATTGGAGACCGCTTGCCCAACTCTATGA
AGAGCTTTGCAATCGACTTCACTGGCACCGCGTTACTCCTTCGAATCAAA
ACCAAGAGTGTCCTCCGGTGCAATGTTGTCCAAAGATACCTTTCGTGAAA
TTCCGACGAAATTTTATCGCAAATATCGCGGGGCGAAAGGAAGTTATTCG
GTGAGGCGTGCTCTAGAAGCCTGATTTTCACCAGTGCCTTGCCCATCACA
CCCGGCGATGCGCGAGCACCTCTAGGTGCAGCAGGTGAGCACCGAGAGAC
AAGGGTTCTTCTCCAAGCCGAGGCAGCAGCACCCCCAGCTAAAAAACACC
GGCGGTGGGTTCGCGGTGGGAGATGACGCAATGGCAGCAATGGCGATGGC
GGCAATGACTCAGGAACTGACAGTCATGAAGCACTCACTACAAAAAGAGG
TGAGATTTTTGTCGTTTCTTCGAAGACTGCCGGTTTTTCAACTGCGGCTT
CATCACATCATTGCCGGTTGGGCCGTGCAATTATCAGAGGTTCGTAGGCA
GAATGAAGCAGGAGCTGGCCGCTCACAAAAGGGGGGAGGGAAAATTGAAA
GCGGGGCCCCCCCCAACTATGTTTCCGATTCGGTGTTTTCCTCCTTATCG
CTTCAAACGGAACTTGTCTGAGAACTGTCTTTTTCCCGCTTCGAAACATT
ACATCCCTGTTCTCTTGCTCGCGGTGTCACAAGTGGTCCGACGCTGAAAG
TTATTACGAAGGGAAGAGTGCGCACGACACATGGAACCGTGCTTCGAAGA
GATAGATAGGAGGGTGGTGTTTCGGTACTCCCCGTGTAGTCCATCTGGTG
CGATCGAAACCAATCGCTGAAGCCATAGTCTTGCGTGCGTACATCAATGT
ATGTATGTCATCTGTACTTTATCATGATTGTTGTGCTGGCGACGAGAGGT
GCCAGTTTTAACTTCTCTAGGGAAGCAAGTGTCGGCAACATTCAAGATGC
GTCGACGTCAAAGGAGACCGAAGCAATTGCTTGGAGAATCCCCATATTTC
TCGACGGCCAATGAAAAACAAACCGGTTTGAGTTGACTTTCACCTCGATC
CTGACCCTGCTGGAGCTGGAAACAGTAACGGTTCTCTCCTTCAAGAGCGT
GAGAAGTGTTTTCGTTGGGCGAAAGCCCGAGCTCATTATTAGTCTATGAA
CGTGTAAAGATCCCAAGAATCGAATCGACTACGAGTGAAAACAACTACAT
TGAGCTCTCGAAATGCTTCAAGGTTTCGAACGATGCCATCTTGCAGGTTG
AATCCATGAGAAATGAGCTCGAGCGCGCGAGTGACGACTCGAGGCGCCTC
ACCGACAAGCTTTGCCGCCTAGAAGAAGACAACCGACGGCTTGAAGCTGT
GGTATCACGCTTGGGGGGGCAAGACGCTCGGCGCCTCAAAGCTCAGGTAT
TGTTACGTGTGTAAATTCCGACAGCGAAACCGGTTTGCTTGATCGGCCCG
TCGAACTGTATCCTCAGGGAATCCCAAAGAGCATGCTCCCACGTAGTTCG
CGCCTCGGTAAATGTTCGGGAGCCCCGCTCCGGTCGTCTAGCCATAGAAC
AAACTTCCCCCACATAGTGAAATCCGTATTTGGATTGACGACCACCAGGG
AGCCAAGTCTCTCTCACTTCCCTCTTAACCCTGCCCTACCACGGCCCCGT
CTTTGCCTGCCGTTCTTCGTTTTGCCCCGGCTCCAACAACAGTTATTTTC
GCTGCTAGCTTCGCCTTCGATGGGACAGCTTGGAGAAGGCAACCCCTCGA
CCCAGCTGAGCCCAGCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6975:3..4272+

>mRNA_Ecto-sp13_S_contig6975.17984.1 ID=mRNA_Ecto-sp13_S_contig6975.17984.1|Name=mRNA_Ecto-sp13_S_contig6975.17984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6975:3..4272+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCTGCTCGTTCGGACCAACTTGAGGAGCTGGAAAACGAGCACACCAA
GCTGTTCGGAGATTCCCTGCCGCTATCCACCATGCCGGACAGCTTCAATC
GCGCCATCAGGAGAGCACTCCCGGCCCTGCTCCCGCCGGCGATGGCGGTG
TTCCTCACCGTGTCCATGCCGGCAGTGATACTGCTGCTGAAAGGAGTAGG
CACTACGCTGGTGGCTGTCGCGAAAGGCTACGGGAAGGCAGACCGGTGGC
GCTCAGACGACGGACACGACGTTGGTTCCGCCCTGGAGGTCGGCTTCGGT
GGTGGTGGCGTTGGTGTTGGTGATGGAGTTGGCCGTGACGGGAAACGCCG
TGAACGAGGACTGGAAACCCCCGTTTCGGCCTTCCAAATGTTTCTCGGAG
GGAGTGGTGGCAGTGGTGACGTTCATGCGGGCGGAAGCGGACACGGTGGT
GATGTGGATACCAGGGCGGGCGGTCCTGTGGGGGACAGTCCCGGGGCAGC
CGCGCCGGTCGCGCCCCCTTTGACGGTGCAGCAGGTGAGCACCGAGAGAC
AAGGGTTCTTCTCCAAGCCGAGGCAGCAGCACCCCCAGCTAAAAAACACC
GGCGGTGGGTTCGCGGTGGGAGATGACGCAATGGCAGCAATGGCGATGGC
GGCAATGACTCAGGAACTGACAGTCATGAAGCACTCACTACAAAAAGAGG
TTGAATCCATGAGAAATGAGCTCGAGCGCGCGAGTGACGACTCGAGGCGC
CTCACCGACAAGCTTTGCCGCCTAGAAGAAGACAACCGACGGCTTGAAGC
TGTGGTATCACGCTTGGGGGGGCAAGACGCTCGGCGCCTCAAAGCTCAGT
TATTTTCGCTGCTAGCTTCGCCTTCGATGGGACAGCTTGGAGAAGGCAAC
CCCTCGACCCAGCTGAGCCCAGCCTGA
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