mRNA_Ecto-sp13_S_contig69746.17983.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69746.17983.1
Unique NamemRNA_Ecto-sp13_S_contig69746.17983.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69746.17983.1 vs. uniprot
Match: D1J762_ECTSI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J762_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 5.680e-66
Identity = 101/107 (94.39%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    1 QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFPIILDVDNPDFFRYLDQCAEANLRLIEVDAKEKDHYGHIGQNILYFFLRSINYSIIVTKLLQMMVMKPLDSQKYW 321
            QRSSFYAT+GLDARKFDIHVIKKTNQSAGRLFPIILDVDNP+FF+YLDQCAEANLRLIEV+AKEKDHYGHIGQNILYFFLRS+NYSIIVTKLLQMM MKPLDSQKYW
Sbjct:  255 QRSSFYATIGLDARKFDIHVIKKTNQSAGRLFPIILDVDNPNFFKYLDQCAEANLRLIEVNAKEKDHYGHIGQNILYFFLRSVNYSIIVTKLLQMMFMKPLDSQKYW 361
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BLAST of mRNA_Ecto-sp13_S_contig69746.17983.1 vs. uniprot
Match: A0A7T8G5K1_SCYLO (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5K1_SCYLO)

HSP 1 Score: 179 bits (453), Expect = 8.610e-53
Identity = 82/107 (76.64%), Postives = 95/107 (88.79%), Query Frame = 1 
Query:    1 QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFPIILDVDNPDFFRYLDQCAEANLRLIEVDAKEKDHYGHIGQNILYFFLRSINYSIIVTKLLQMMVMKPLDSQKYW 321
            QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFP+IL+VD+P FF++LD+CAEANL L+++D  EK HYGHI QN+LY F R  NYSII+T LLQM+ MKPLDS+KYW
Sbjct:  279 QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFPVILNVDHPSFFQHLDKCAEANLELVKIDENEKAHYGHIVQNVLYLFQRGFNYSIIITNLLQMIFMKPLDSEKYW 385
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BLAST of mRNA_Ecto-sp13_S_contig69746.17983.1 vs. uniprot
Match: A0A6B7EV98_9PHAE (Probable magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV98_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 6.720e-50
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:    1 QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFPIILDVDNPDFFRYLDQCAEANLRLIEVDAKEKDHYGHIGQNILYFFLRSINYSIIVTKLLQMMVMKPLDSQKYW 321
            QRSSFYAT+GLDA+KFDIHVIKKTNQSAGRLFP+IL+VD+PDFF++LD CA+AN  L+ +D KEK+HYGH+ Q  +YFF RS NYSII+ KLLQM+ MKPLDS+K W
Sbjct:  255 QRSSFYATIGLDAKKFDIHVIKKTNQSAGRLFPVILNVDHPDFFKHLDICAQANSALVAIDTKEKNHYGHVIQTAIYFFQRSYNYSIIIIKLLQMIFMKPLDSKKNW 361
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BLAST of mRNA_Ecto-sp13_S_contig69746.17983.1 vs. uniprot
Match: A0A0R6MAQ6_UNDPI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase n=30 Tax=Laminariales TaxID=2886 RepID=A0A0R6MAQ6_UNDPI)

HSP 1 Score: 161 bits (407), Expect = 3.740e-46
Identity = 78/107 (72.90%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    1 QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFPIILDVDNPDFFRYLDQCAEANLRLIEVDAKEKDHYGHIGQNILYFFLRSINYSIIVTKLLQMMVMKPLDSQKYW 321
            QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFP+IL+V++P FF+ LD+CAEANL LIE+D KEK HYGHI QN  +FF R  NY II+  L+QM +MKPL+S+K W
Sbjct:  256 QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFPVILNVNHPSFFQSLDKCAEANLALIEIDVKEKAHYGHILQNFRFFFQRIGNYFIILINLIQMGLMKPLNSEKDW 362
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BLAST of mRNA_Ecto-sp13_S_contig69746.17983.1 vs. uniprot
Match: A0A1I9LVR5_9PHAE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVR5_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 2.080e-41
Identity = 66/107 (61.68%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    1 QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFPIILDVDNPDFFRYLDQCAEANLRLIEVDAKEKDHYGHIGQNILYFFLRSINYSIIVTKLLQMMVMKPLDSQKYW 321
            QR+ FYA++GL+A+ FDIHVI KTN ++ RLFPIIL++++P+F++ LDQCAEANL+LIE+D KEK+HYGHI  NI+ FF R  NY II+  LLQ+M++KPL+S++YW
Sbjct:  254 QRNKFYASIGLNAKTFDIHVIYKTNYTSARLFPIILNLEHPEFYKLLDQCAEANLKLIEIDRKEKNHYGHININIISFFQRIYNYYIIIINLLQIMLIKPLNSKQYW 360
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BLAST of mRNA_Ecto-sp13_S_contig69746.17983.1 vs. uniprot
Match: A0A8F0F9Z2_9PHAE (Probable magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Z2_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 6.060e-41
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:    1 QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFPIILDVDNPDFFRYLDQCAEANLRLIEVDAKEKDHYGHIGQNILYFFLRSINYSIIVTKLLQMMVMKPLDSQKYW 321
            QR SFYATLGLDARKFDIHVIKKTNQSAGRLFPIIL+V++P FF++LD CA+ANL L E++ KE  HYGHI Q   +F+ RS NY  IV  L+ +  MKPL+++K W
Sbjct:  256 QRGSFYATLGLDARKFDIHVIKKTNQSAGRLFPIILNVNHPSFFKHLDNCAKANLALTEIEKKENSHYGHILQTFTFFWQRSSNYFTIVLNLILLGFMKPLNTEKDW 362
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BLAST of mRNA_Ecto-sp13_S_contig69746.17983.1 vs. uniprot
Match: A0A8F0FAR3_9PHAE (Probable magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAR3_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 9.320e-40
Identity = 66/107 (61.68%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFPIILDVDNPDFFRYLDQCAEANLRLIEVDAKEKDHYGHIGQNILYFFLRSINYSIIVTKLLQMMVMKPLDSQKYW 321
            QR+SFYATLGLDA++FDI+VIKKTNQS+GRLFP+ILDV++P FF+YLD CAEANL L E+D+KEK H GH+ ++  +F  R +NY II   L+ +  +KPL+S+K W
Sbjct:  256 QRASFYATLGLDAKQFDIYVIKKTNQSSGRLFPVILDVNHPSFFKYLDNCAEANLALTEIDSKEKAHLGHLLKSFSFFGQRILNYFIIAKNLINLYFLKPLNSEKDW 362
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BLAST of mRNA_Ecto-sp13_S_contig69746.17983.1 vs. uniprot
Match: D1GJI3_FUCVE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJI3_FUCVE)

HSP 1 Score: 135 bits (340), Expect = 3.590e-36
Identity = 63/107 (58.88%), Postives = 84/107 (78.50%), Query Frame = 1 
Query:    1 QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFPIILDVDNPDFFRYLDQCAEANLRLIEVDAKEKDHYGHIGQNILYFFLRSINYSIIVTKLLQMMVMKPLDSQKYW 321
            QRS+FY  LGLDA++FD HVI+KTN SAGRLFP+IL+V +P FF YLD CAEANL LI+++ K+K H+GHI QNI+Y   R +NY II+  L+ +  ++P++SQK W
Sbjct:  260 QRSNFYKLLGLDAKEFDRHVIEKTNTSAGRLFPVILNVKHPCFFLYLDNCAEANLSLIKMNNKQKPHFGHILQNIIYLSHRCVNYFIIMKNLVYLYFLEPINSQKEW 366
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BLAST of mRNA_Ecto-sp13_S_contig69746.17983.1 vs. uniprot
Match: A0A8E5XRG3_9PHAE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRG3_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 3.650e-34
Identity = 56/107 (52.34%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    1 QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFPIILDVDNPDFFRYLDQCAEANLRLIEVDAKEKDHYGHIGQNILYFFLRSINYSIIVTKLLQMMVMKPLDSQKYW 321
            QR  FY+TLGLDA+KFD+HVIKKTNQSAGRLFP+ILD+++P+FF+ LD+CA ANL+L+++ + +  H GH+ Q ++Y   +  NY I+   L+++  +KP+  QK W
Sbjct:  253 QRKDFYSTLGLDAQKFDVHVIKKTNQSAGRLFPVILDLEHPEFFKRLDKCAIANLKLLKLTSNDSKHSGHMAQKLIYGLNKLSNYFILTINLIRLYFIKPIQVQKNW 359
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BLAST of mRNA_Ecto-sp13_S_contig69746.17983.1 vs. uniprot
Match: A0A8B6NI03_9PHAE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A8B6NI03_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.220e-32
Identity = 55/107 (51.40%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:    1 QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFPIILDVDNPDFFRYLDQCAEANLRLIEVDAKEKDHYGHIGQNILYFFLRSINYSIIVTKLLQMMVMKPLDSQKYW 321
            QRS+FY  +GLDA++FD +VI+KTN+SAGRLFPI+LDV +P FF+YLD C +ANL L++++ K+K H G+I +  +YF  R  NY +I   L+ +  ++P++SQK W
Sbjct:  260 QRSNFYRLIGLDAKEFDRYVIRKTNESAGRLFPIMLDVKHPLFFKYLDNCVQANLSLVKIEEKQKQHRGYIIEKFVYFLKRCFNYYMIAKNLVYLYFLQPINSQKTW 366
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69746.17983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J762_ECTSI5.680e-6694.39Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
A0A7T8G5K1_SCYLO8.610e-5376.64Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
A0A6B7EV98_9PHAE6.720e-5072.90Probable magnesium-protoporphyrin IX monomethyl es... [more]
A0A0R6MAQ6_UNDPI3.740e-4672.90Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
A0A1I9LVR5_9PHAE2.080e-4161.68Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
A0A8F0F9Z2_9PHAE6.060e-4165.42Probable magnesium-protoporphyrin IX monomethyl es... [more]
A0A8F0FAR3_9PHAE9.320e-4061.68Probable magnesium-protoporphyrin IX monomethyl es... [more]
D1GJI3_FUCVE3.590e-3658.88Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
A0A8E5XRG3_9PHAE3.650e-3452.34Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
A0A8B6NI03_9PHAE1.220e-3251.40Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69746contigEcto-sp13_S_contig69746:366..704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score211.5
Seed ortholog evalue2.1e-52
Seed eggNOG ortholog2880.D1J762
Preferred nameacsF
Model size339
KEGG rclassRC00741,RC01491,RC01492,RC03042
KEGG koko:K04035
KEGG ReactionR06265,R06266,R06267,R10068
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004497,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009658,GO:0009706,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016020,GO:0016043,GO:0016491,GO:0016705,GO:0016709,GO:0018130,GO:0019222,GO:0019438,GO:0019866,GO:0031090,GO:0031323,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0033013,GO:0033014,GO:0034357,GO:0034641,GO:0042170,GO:0042440,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0048529,GO:0050789,GO:0050794,GO:0051171,GO:0051186,GO:0051188,GO:0055035,GO:0055114,GO:0065007,GO:0071704,GO:0071840,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901401,GO:1901564,GO:1901566,GO:1901576
Exons1
EggNOG free text desc.magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity
EggNOG OGs2CMR5@1,2QRIH@2759
EC1.14.13.81
Cds size339
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.605737-CDS-Ecto-sp13_S_contig69746:365..7041681463956.605737-CDS-Ecto-sp13_S_contig69746:365..704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69746 366..704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69746.17983.1prot_Ecto-sp13_S_contig69746.17983.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69746 366..704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69746.17983.1

>prot_Ecto-sp13_S_contig69746.17983.1 ID=prot_Ecto-sp13_S_contig69746.17983.1|Name=mRNA_Ecto-sp13_S_contig69746.17983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
QRSSFYATLGLDARKFDIHVIKKTNQSAGRLFPIILDVDNPDFFRYLDQC
AEANLRLIEVDAKEKDHYGHIGQNILYFFLRSINYSIIVTKLLQMMVMKP
LDSQKYWXXXXN*
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mRNA from alignment at Ecto-sp13_S_contig69746:366..704-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69746.17983.1 ID=mRNA_Ecto-sp13_S_contig69746.17983.1|Name=mRNA_Ecto-sp13_S_contig69746.17983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69746:366..704- (Ectocarpus species13 EcNAP12_S_4_19m)
CAACGAAGTAGTTTTTATGCAACTCTTGGGTTAGATGCTAGAAAATTTGA
TATTCATGTTATCAAAAAGACAAACCAAAGTGCTGGTCGCTTATTTCCTA
TTATTTTAGATGTAGATAATCCAGATTTTTTTAGATATTTAGATCAATGT
GCTGAAGCAAATTTACGATTAATTGAAGTTGATGCAAAAGAAAAAGATCA
TTATGGACATATTGGACAAAATATTTTATACTTTTTCCTACGTAGTATTA
ATTACTCTATTATTGTGACGAAGTTATTACAGATGATGGTTATGAAACCA
TTAGATTCTCAAAAATATTGGANNNNNNNNNNTAATTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69746:366..704-

>mRNA_Ecto-sp13_S_contig69746.17983.1 ID=mRNA_Ecto-sp13_S_contig69746.17983.1|Name=mRNA_Ecto-sp13_S_contig69746.17983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69746:366..704- (Ectocarpus species13 EcNAP12_S_4_19m)
CAACGAAGTAGTTTTTATGCAACTCTTGGGTTAGATGCTAGAAAATTTGA
TATTCATGTTATCAAAAAGACAAACCAAAGTGCTGGTCGCTTATTTCCTA
TTATTTTAGATGTAGATAATCCAGATTTTTTTAGATATTTAGATCAATGT
GCTGAAGCAAATTTACGATTAATTGAAGTTGATGCAAAAGAAAAAGATCA
TTATGGACATATTGGACAAAATATTTTATACTTTTTCCTACGTAGTATTA
ATTACTCTATTATTGTGACGAAGTTATTACAGATGATGGTTATGAAACCA
TTAGATTCTCAAAAATATTGGANNNNNNNNNNTAATTAA
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