mRNA_Ecto-sp13_S_contig69746.17982.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69746.17982.1
Unique NamemRNA_Ecto-sp13_S_contig69746.17982.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69746.17982.1 vs. uniprot
Match: A0A6G6D7F4_ECTSI (Putative peroxiredoxin ycf42 n=5 Tax=Ectocarpales TaxID=2877 RepID=A0A6G6D7F4_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 1.980e-75
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MNNNNVQVGEIAPDFETVAIYDEESYNIRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSY 348
            MNNNNVQVGEIAPDF+TVAIYDEESYNIRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSY
Sbjct:    1 MNNNNVQVGEIAPDFDTVAIYDEESYNIRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSY 116
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BLAST of mRNA_Ecto-sp13_S_contig69746.17982.1 vs. uniprot
Match: A0A6B7IKH9_9PHAE (Putative peroxiredoxin ycf42 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A6B7IKH9_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 2.200e-72
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 1 
Query:    1 MNNNNVQVGEIAPDFETVAIYDEESYNIRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSY 348
            MNNNNVQVG+IAPDFETVAIYDEESY IRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRF+EFSSLDTEVLGVSVDSEYSHLLWTQTKRE+GGVGLL YPLVSDIKKEISNSY
Sbjct:    1 MNNNNVQVGKIAPDFETVAIYDEESYEIRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRFKEFSSLDTEVLGVSVDSEYSHLLWTQTKREDGGVGLLEYPLVSDIKKEISNSY 116
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BLAST of mRNA_Ecto-sp13_S_contig69746.17982.1 vs. uniprot
Match: A0A516ICQ5_9PHAE (Putative peroxiredoxin ycf42 n=29 Tax=Laminariales TaxID=2886 RepID=A0A516ICQ5_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 3.650e-64
Identity = 98/116 (84.48%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 MNNNNVQVGEIAPDFETVAIYDEESYNIRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSY 348
            MNNNN +VG IAPDFE +A+YDEE Y IRLSDYRKKKYVVLFFYPLNFTFVCPTEIT+FSDRF+EFSSLDTEVL VSVDSEYSHL W QTKRE+GG+G L+YPLVSD+KKEISNSY
Sbjct:    1 MNNNNARVGGIAPDFEAIAVYDEERYKIRLSDYRKKKYVVLFFYPLNFTFVCPTEITSFSDRFKEFSSLDTEVLAVSVDSEYSHLSWVQTKREDGGLGPLSYPLVSDLKKEISNSY 116
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BLAST of mRNA_Ecto-sp13_S_contig69746.17982.1 vs. uniprot
Match: A0A8F0JZM2_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZM2_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 2.700e-59
Identity = 89/116 (76.72%), Postives = 105/116 (90.52%), Query Frame = 1 
Query:    1 MNNNNVQVGEIAPDFETVAIYDEESYNIRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSY 348
            MNNNN QVG++APDFE  A+++EE   +RLSDYRKKKYV+LFFYPL+FTFVCPTEIT+FSDRF EFSSLDTE+LGVSVDS+YSHL W QT+R+EGG+GLL YPLVSD+ KEISN+Y
Sbjct:    1 MNNNNAQVGKVAPDFEATAVFEEEFGKVRLSDYRKKKYVILFFYPLDFTFVCPTEITSFSDRFYEFSSLDTEILGVSVDSKYSHLTWLQTERDEGGLGLLTYPLVSDLDKEISNAY 116
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BLAST of mRNA_Ecto-sp13_S_contig69746.17982.1 vs. uniprot
Match: A0A1L2F1U3_9PHAE (Ycf42 n=17 Tax=Fucales TaxID=3009 RepID=A0A1L2F1U3_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 4.440e-58
Identity = 90/116 (77.59%), Postives = 101/116 (87.07%), Query Frame = 1 
Query:    1 MNNNNVQVGEIAPDFETVAIYDEESYNIRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSY 348
            M NNN Q+G+IAPDFE +A++DEE   IRLSDYR KKYVVLFFYPLNFTFVCPTEIT+FSDRFEEF  LDTE+LGVSVDSEYSHL W Q +REEGG+G L YPLVSD+KKEI+ SY
Sbjct:    1 MKNNNAQIGKIAPDFEAIAVFDEEFGKIRLSDYRNKKYVVLFFYPLNFTFVCPTEITSFSDRFEEFMDLDTEILGVSVDSEYSHLAWLQIEREEGGLGELTYPLVSDLKKEITLSY 116
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BLAST of mRNA_Ecto-sp13_S_contig69746.17982.1 vs. uniprot
Match: A0A2I4Q2C8_9PHAE (Putative peroxiredoxin ycf42 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C8_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 1.240e-52
Identity = 78/111 (70.27%), Postives = 97/111 (87.39%), Query Frame = 1 
Query:   16 VQVGEIAPDFETVAIYDEESYNIRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSY 348
            +QVG++APDFE +A ++E+ + +RLSDYRKKKYV+LFFYPL+FTFVCPTEIT+F D F+ FS LDTE+LG+SVDSE+SHL W  T+RE GG+GLLNYPLVSD+ KEIS SY
Sbjct:    2 IQVGQLAPDFEALAAFEEDIFKVRLSDYRKKKYVILFFYPLDFTFVCPTEITSFDDYFDTFSDLDTEILGISVDSEFSHLTWLDTEREYGGIGLLNYPLVSDLTKEISKSY 112
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BLAST of mRNA_Ecto-sp13_S_contig69746.17982.1 vs. uniprot
Match: A0A6P0ND01_9CYAN (Peroxiredoxin n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0ND01_9CYAN)

HSP 1 Score: 171 bits (432), Expect = 5.030e-52
Identity = 78/111 (70.27%), Postives = 98/111 (88.29%), Query Frame = 1 
Query:   16 VQVGEIAPDFETVAIYDEESYNIRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSY 348
            +QVG++APDFE +A ++E+ + +RLSDYRKKKYV+LFFYPL+FTFVCPTEIT+F+D FE FS L+TE+LGVSVDSE+SHL W  T+RE GG+GLLNYPL+SDI K+IS SY
Sbjct:    2 IQVGQLAPDFEALAAFEEDIFKVRLSDYRKKKYVILFFYPLDFTFVCPTEITSFNDYFETFSELNTEILGVSVDSEFSHLTWLDTEREYGGIGLLNYPLLSDITKDISRSY 112
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BLAST of mRNA_Ecto-sp13_S_contig69746.17982.1 vs. uniprot
Match: Q2JQS6_SYNJA (Antioxidant, AhpC/Tsa family n=6 Tax=Synechococcus TaxID=1129 RepID=Q2JQS6_SYNJA)

HSP 1 Score: 167 bits (424), Expect = 1.430e-50
Identity = 81/111 (72.97%), Postives = 94/111 (84.68%), Query Frame = 1 
Query:   16 VQVGEIAPDFETVAIYDEESYNIRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSY 348
            ++VG+ APDF   A+YD E   +RLSDYR KKYVVLFFYPL+FTFVCPTEITAFSDR++EF+ LDTE+LGVSVDSEYSHL W QT R+ GGVG L YPLVSD+KKEIS +Y
Sbjct:    7 LRVGQPAPDFSATAVYDMEFKTVRLSDYRGKKYVVLFFYPLDFTFVCPTEITAFSDRYDEFAKLDTEILGVSVDSEYSHLAWIQTDRKAGGVGELRYPLVSDLKKEISAAY 117
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BLAST of mRNA_Ecto-sp13_S_contig69746.17982.1 vs. uniprot
Match: A0A8F0JXH3_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXH3_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 2.160e-50
Identity = 80/114 (70.18%), Postives = 97/114 (85.09%), Query Frame = 1 
Query:    7 NNNVQVGEIAPDFETVAIYDEESYNIRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSY 348
            N + QVG+ APDFE  A++ EE   IRLSDYR KKYV+LFFYPL+FTFVCPTEIT+FSDRF EF++LDTE+LGVSVDS+Y+HL W QT REEGG+G L YPLV+D++KEIS +Y
Sbjct:    5 NISTQVGKPAPDFEVTAVFQEEFGKIRLSDYRYKKYVILFFYPLDFTFVCPTEITSFSDRFNEFAALDTEILGVSVDSKYAHLTWLQTDREEGGLGELEYPLVADLRKEISKAY 118
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BLAST of mRNA_Ecto-sp13_S_contig69746.17982.1 vs. uniprot
Match: A0A3G1IVZ0_9EUKA (Putative peroxiredoxin n=1 Tax=Gloeochaete wittrockiana TaxID=38269 RepID=A0A3G1IVZ0_9EUKA)

HSP 1 Score: 166 bits (421), Expect = 4.210e-50
Identity = 78/113 (69.03%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:   10 NNVQVGEIAPDFETVAIYDEESYNIRLSDYRKKKYVVLFFYPLNFTFVCPTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLLNYPLVSDIKKEISNSY 348
            N+ QVG++APDFE  A+ ++E   IRLSDY+ KKY+VLFFYPL+FTFVCPTEITAF D++EEF++L TE+LGVSVDSEY+HL W QT R+ GG+G L YPL+SDIKK ISNSY
Sbjct:    6 NSAQVGQLAPDFEATAVLNQEFKKIRLSDYKNKKYIVLFFYPLDFTFVCPTEITAFDDKYEEFTNLQTEILGVSVDSEYAHLAWLQTDRKSGGLGDLKYPLISDIKKIISNSY 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69746.17982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G6D7F4_ECTSI1.980e-7599.14Putative peroxiredoxin ycf42 n=5 Tax=Ectocarpales ... [more]
A0A6B7IKH9_9PHAE2.200e-7295.69Putative peroxiredoxin ycf42 n=5 Tax=Scytosiphonac... [more]
A0A516ICQ5_9PHAE3.650e-6484.48Putative peroxiredoxin ycf42 n=29 Tax=Laminariales... [more]
A0A8F0JZM2_9PHAE2.700e-5976.72Thioredoxin domain-containing protein n=1 Tax=Desm... [more]
A0A1L2F1U3_9PHAE4.440e-5877.59Ycf42 n=17 Tax=Fucales TaxID=3009 RepID=A0A1L2F1U3... [more]
A0A2I4Q2C8_9PHAE1.240e-5270.27Putative peroxiredoxin ycf42 n=1 Tax=Dictyopteris ... [more]
A0A6P0ND01_9CYAN5.030e-5270.27Peroxiredoxin n=1 Tax=Moorena sp. SIO3C2 TaxID=260... [more]
Q2JQS6_SYNJA1.430e-5072.97Antioxidant, AhpC/Tsa family n=6 Tax=Synechococcus... [more]
A0A8F0JXH3_9PHAE2.160e-5070.18Thioredoxin domain-containing protein n=1 Tax=Prot... [more]
A0A3G1IVZ0_9EUKA4.210e-5069.03Putative peroxiredoxin n=1 Tax=Gloeochaete wittroc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69746contigEcto-sp13_S_contig69746:2..349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score234.2
Seed ortholog evalue3.1e-59
Seed eggNOG ortholog2880.D1J761
Preferred nameycf42
Model size348
KEGG koko:K03386,ko:K13279
KEGG Pathwayko04146,ko04214,map04146,map04214
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009636,GO:0009941,GO:0009987,GO:0010319,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0031967,GO:0031975,GO:0042221,GO:0042737,GO:0042742,GO:0042743,GO:0042744,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0050896,GO:0051186,GO:0051187,GO:0051704,GO:0051707,GO:0051716,GO:0051920,GO:0055114,GO:0070887,GO:0072593,GO:0097237,GO:0098542,GO:0098754,GO:0098869,GO:1990748
Exons1
EggNOG free text desc.peroxiredoxin activity
EggNOG OGsCOG0450@1,KOG0852@2759
EC1.11.1.15
Cds size348
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.5727956-CDS-Ecto-sp13_S_contig69746:1..3491681463956.5727956-CDS-Ecto-sp13_S_contig69746:1..349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69746 2..349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69746.17982.1prot_Ecto-sp13_S_contig69746.17982.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69746 2..349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69746.17982.1

>prot_Ecto-sp13_S_contig69746.17982.1 ID=prot_Ecto-sp13_S_contig69746.17982.1|Name=mRNA_Ecto-sp13_S_contig69746.17982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MNNNNVQVGEIAPDFETVAIYDEESYNIRLSDYRKKKYVVLFFYPLNFTF
VCPTEITAFSDRFEEFSSLDTEVLGVSVDSEYSHLLWTQTKREEGGVGLL
NYPLVSDIKKEISNSY
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mRNA from alignment at Ecto-sp13_S_contig69746:2..349-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69746.17982.1 ID=mRNA_Ecto-sp13_S_contig69746.17982.1|Name=mRNA_Ecto-sp13_S_contig69746.17982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69746:2..349- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATAATAATAATGTACAAGTAGGGGAAATCGCTCCGGACTTTGAAAC
AGTAGCAATTTATGATGAGGAAAGTTATAATATACGATTATCAGATTATC
GTAAAAAAAAGTATGTGGTTCTATTTTTTTATCCATTAAATTTTACTTTT
GTTTGTCCTACAGAAATAACGGCATTTAGTGATCGATTCGAAGAATTTAG
TTCTCTAGATACAGAAGTTTTAGGAGTTTCAGTTGACAGTGAATATTCAC
ATTTATTATGGACTCAGACTAAACGTGAAGAAGGTGGTGTTGGATTATTA
AATTATCCTTTAGTTTCCGATATAAAAAAGGAAATTAGTAATTCCTAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69746:2..349-

>mRNA_Ecto-sp13_S_contig69746.17982.1 ID=mRNA_Ecto-sp13_S_contig69746.17982.1|Name=mRNA_Ecto-sp13_S_contig69746.17982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69746:2..349- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATAATAATAATGTACAAGTAGGGGAAATCGCTCCGGACTTTGAAAC
AGTAGCAATTTATGATGAGGAAAGTTATAATATACGATTATCAGATTATC
GTAAAAAAAAGTATGTGGTTCTATTTTTTTATCCATTAAATTTTACTTTT
GTTTGTCCTACAGAAATAACGGCATTTAGTGATCGATTCGAAGAATTTAG
TTCTCTAGATACAGAAGTTTTAGGAGTTTCAGTTGACAGTGAATATTCAC
ATTTATTATGGACTCAGACTAAACGTGAAGAAGGTGGTGTTGGATTATTA
AATTATCCTTTAGTTTCCGATATAAAAAAGGAAATTAGTAATTCCTAT
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