mRNA_Ecto-sp13_S_contig697.17980.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig697.17980.1
Unique NamemRNA_Ecto-sp13_S_contig697.17980.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig697.17980.1 vs. uniprot
Match: A0A6H5L6A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.740e-15
Identity = 92/118 (77.97%), Postives = 95/118 (80.51%), Query Frame = -3 
Query:  326 IVSYVHPSPSDEELIESVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDYAQAVAASLAQSPXXXXXXXXXXXDEGQEEPLGDIPESEFFWVEKEWLRQWIVGQRADQDGESA 679
            +V YVHPSPSDEEL ES A   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDYAQAV        XXXXXXXXXXX      P G+IPES+FFWVE EWLRQWIVGQ ADQDGESA
Sbjct:  563 VVPYVHPSPSDEELEESDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDYAQAVXXXXXXXXXXXXXXXXXXXXXXXXXPPGNIPESKFFWVETEWLRQWIVGQHADQDGESA 680
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BLAST of mRNA_Ecto-sp13_S_contig697.17980.1 vs. uniprot
Match: D8LKX6_ECTSI (Similar to ubiquitin specific protease 48 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKX6_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.310e-14
Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = -3 
Query:  338 LDYAQAVAASLAQSPXXXXXXXXXXXDEGQEEPLGDIPESEFFWVEKEWLRQWIVGQRADQD 523
            LD+AQAVAASLAQSP   XXXXXXXX  GQEE  G+IPESEFFWVE EWLRQWIVGQRAD +
Sbjct: 1156 LDFAQAVAASLAQSPTAAXXXXXXXXXXGQEELPGNIPESEFFWVEAEWLRQWIVGQRADHN 1217
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig697.17980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6A7_9PHAE3.740e-1577.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKX6_ECTSI1.310e-1480.65Similar to ubiquitin specific protease 48 n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig697contigEcto-sp13_S_contig697:3049..3761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size714
Hectar predicted targeting categoryother localisation
Exons1
Cds size711
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.4376428-CDS-Ecto-sp13_S_contig697:3048..37591681463956.4376428-CDS-Ecto-sp13_S_contig697:3048..3759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig697 3049..3759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig697.17980.1prot_Ecto-sp13_S_contig697.17980.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig697 3049..3759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig697.17980.1

>prot_Ecto-sp13_S_contig697.17980.1 ID=prot_Ecto-sp13_S_contig697.17980.1|Name=mRNA_Ecto-sp13_S_contig697.17980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
AQARLLPLLQGLLRCCVPPLQRHPALVHRRHRRLRRHRWPRPPPPPWWSL
PPPSSRCCRRRRRRRRPPPPQRLQHRRARGGPRPRSRRSLEEMSLWTPPP
PPLQQQQQQQTRHPDRRAARRSIAAAIPFPPRRTRSRGYPLAAPLAPRLL
RCRRRQQRRSGIAPRTRPPPARSRAPPGWLTRPPRRLQRRWRRRRRLASP
RRHRLPLWRPILLAPRRRGWGGRTRQLPAAAPADRCP
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mRNA from alignment at Ecto-sp13_S_contig697:3049..3761+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig697.17980.1 ID=mRNA_Ecto-sp13_S_contig697.17980.1|Name=mRNA_Ecto-sp13_S_contig697.17980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=713bp|location=Sequence derived from alignment at Ecto-sp13_S_contig697:3049..3761+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACAGGCCCGCCTGCTGCCTCTTCTTCAGGGTCTCCTCCGCTGCTGTGT
GCCGCCACTGCAGCGCCATCCGGCTTTGGTTCATCGCCGGCATCGGCGGC
TCCGGCGTCATCGCTGGCCTCGCCCTCCCCCGCCGCCTTGGTGGTCTCTT
CCACCTCCATCGTCTCGCTGCTGCCGCCGCCGCCGCCGCCGCCGCCGGCC
TCCCCCCCCTCAGAGGCTGCAACACCGTCGAGCACGAGGGGGTCCCCGCC
CAAGGAGCCGCCGTTCGCTGGAAGAGATGTCGCTGTGGACGCCGCCGCCG
CCGCCGCTGCAGCAGCAGCAGCAGCAGCAGACTCGCCATCCTGATCGGCG
CGCTGCCCGACGATCCATTGCCGCAGCCATTCCTTTTCCACCCAGAAGAA
CTCGCTCTCGGGGATATCCCCTAGCGGCTCCTCTTGCCCCTCGTCTTCTT
CGCTGTCGGCGGCGGCAGCAGCGGCGGTCGGGGATTGCGCCAAGGACGCG
GCCACCGCCTGCGCGTAGTCGAGCTCCTCCTGGGTGGTTGACTCGTCCGC
CTCGGCGGCTGCAGCGGCGATGGCGGAGACGGCGGCGGCTTGCCTCGCCT
CGTCGTCATCGTCTCCCGCTGTGGCGACCGATTCTATTAGCTCCTCGTCG
GAGGGGCTGGGGTGGACGTACGAGACAATTGCCTGCTGCTGCTCCTGCTG
ATCGTTGTCCACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig697:3049..3761+

>mRNA_Ecto-sp13_S_contig697.17980.1 ID=mRNA_Ecto-sp13_S_contig697.17980.1|Name=mRNA_Ecto-sp13_S_contig697.17980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=711bp|location=Sequence derived from alignment at Ecto-sp13_S_contig697:3049..3761+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACAGGCCCGCCTGCTGCCTCTTCTTCAGGGTCTCCTCCGCTGCTGTGT
GCCGCCACTGCAGCGCCATCCGGCTTTGGTTCATCGCCGGCATCGGCGGC
TCCGGCGTCATCGCTGGCCTCGCCCTCCCCCGCCGCCTTGGTGGTCTCTT
CCACCTCCATCGTCTCGCTGCTGCCGCCGCCGCCGCCGCCGCCGCCGGCC
TCCCCCCCCTCAGAGGCTGCAACACCGTCGAGCACGAGGGGGTCCCCGCC
CAAGGAGCCGCCGTTCGCTGGAAGAGATGTCGCTGTGGACGCCGCCGCCG
CCGCCGCTGCAGCAGCAGCAGCAGCAGCAGACTCGCCATCCTGATCGGCG
CGCTGCCCGACGATCCATTGCCGCAGCCATTCCTTTTCCACCCAGAAGAA
CTCGCTCTCGGGGATATCCCCTAGCGGCTCCTCTTGCCCCTCGTCTTCTT
CGCTGTCGGCGGCGGCAGCAGCGGCGGTCGGGGATTGCGCCAAGGACGCG
GCCACCGCCTGCGCGTAGTCGAGCTCCTCCTGGGTGGTTGACTCGTCCGC
CTCGGCGGCTGCAGCGGCGATGGCGGAGACGGCGGCGGCTTGCCTCGCCT
CGTCGTCATCGTCTCCCGCTGTGGCGACCGATTCTATTAGCTCCTCGTCG
GAGGGGCTGGGGTGGACGTACGAGACAATTGCCTGCTGCTGCTCCTGCTG
ATCGTTGTCCA
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