mRNA_Ecto-sp13_S_contig69671.17978.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69671.17978.1
Unique NamemRNA_Ecto-sp13_S_contig69671.17978.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69671.17978.1 vs. uniprot
Match: A0A6H5KJ38_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ38_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 1.160e-58
Identity = 102/128 (79.69%), Postives = 109/128 (85.16%), Query Frame = -2 
Query:   90 SECSWSLPSLWEREAAKETRRESIPSPYAPLDRDVPPLRIAAMVWERSTLGKVSFRRPELPGAAFGAAVIEPFHGAAWTSTLKRITLRSKNSNLPPTTAMLGAKGGEINWPPSLEELTFGEHFDAPIN 473
            SECSWSLPSLWEREAA ETR ++IPSPY+P DRDVPPLRIA MVWERS L K SF RPELP AAFG A IEP HGAA T+TLKRITL SKNS+LP TT ML AK GEINWPPSL+ELTFGE F+APIN
Sbjct:  226 SECSWSLPSLWEREAAIETRTDTIPSPYSPPDRDVPPLRIAGMVWERSALAKASFGRPELPEAAFGMAAIEPLHGAACTTTLKRITLSSKNSHLP-TTVMLDAKDGEINWPPSLKELTFGERFNAPIN 352
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BLAST of mRNA_Ecto-sp13_S_contig69671.17978.1 vs. uniprot
Match: D8LFW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW9_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.000e-43
Identity = 74/90 (82.22%), Postives = 78/90 (86.67%), Query Frame = -1 
Query:  199 VQLESPLFVGKGGSERDQARIDPFPVRSTGQRCPPSQDRGHGVGAQHAGEGFLSPSRAAGSGLRGRGDRALPRGGLDVHAETDHPQVEEL 468
            +QLESPL VGKGGS+R Q RIDPFPV STGQRCPPSQD GH VGAQHAGEGFL  SRAAG GLRGRGDRAL RGGL VHAE +HPQ+EEL
Sbjct:    1 MQLESPLLVGKGGSDRGQERIDPFPVCSTGQRCPPSQDHGHCVGAQHAGEGFLWLSRAAGGGLRGRGDRALARGGLHVHAEANHPQLEEL 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69671.17978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ38_9PHAE1.160e-5879.69Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LFW9_ECTSI2.000e-4382.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69671contigEcto-sp13_S_contig69671:94..633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size540
Hectar predicted targeting categoryother localisation
Exons1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.3453827-UTR-Ecto-sp13_S_contig69671:93..1201681463956.3453827-UTR-Ecto-sp13_S_contig69671:93..120Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig69671 94..120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.355291-CDS-Ecto-sp13_S_contig69671:120..6331681463956.355291-CDS-Ecto-sp13_S_contig69671:120..633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69671 121..633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69671.17978.1prot_Ecto-sp13_S_contig69671.17978.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69671 121..633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69671.17978.1

>prot_Ecto-sp13_S_contig69671.17978.1 ID=prot_Ecto-sp13_S_contig69671.17978.1|Name=mRNA_Ecto-sp13_S_contig69671.17978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MGWLKDLPNESCWSESGHATWLMGASKCSPKVSSSREGGQFISPPFAPSI
AVVGGRLEFFDLRVIRFSVDVQAAPWKGSITAAPKAAPGSSGRRKETFPS
VLRSHTMAAILRGGTSLSSGAYGEGIDSRLVSFAASLSHKEGRLQLHSLP
STSLAAASSPSASLPGAPSRL
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mRNA from alignment at Ecto-sp13_S_contig69671:94..633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69671.17978.1 ID=mRNA_Ecto-sp13_S_contig69671.17978.1|Name=mRNA_Ecto-sp13_S_contig69671.17978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69671:94..633+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGAAGGCGGCAACGACACTCCGGCGATGGGTTGGTTGAAGGACCTCCC
GAACGAGAGTTGCTGGAGCGAGTCCGGCCACGCGACGTGGTTGATGGGGG
CGTCGAAATGCTCGCCGAAGGTCAGCTCTTCCAGAGAAGGCGGCCAGTTT
ATTTCGCCGCCTTTCGCTCCAAGCATCGCCGTCGTCGGGGGAAGGTTGGA
GTTCTTCGACCTGAGGGTGATCCGTTTCAGCGTGGACGTCCAGGCCGCCC
CGTGGAAGGGCTCGATCACCGCGGCCCCGAAGGCCGCTCCCGGCAGCTCG
GGACGGCGAAAGGAAACCTTCCCCAGCGTGCTGCGCTCCCACACCATGGC
CGCGATCCTGAGAGGGGGGACATCTCTGTCCAGTGGAGCGTACGGGGAAG
GGATCGATTCTCGCCTGGTCTCTTTCGCTGCCTCCCTTTCCCACAAAGAG
GGGAGACTCCAGCTGCACTCGCTACCGTCCACATCGCTAGCGGCGGCGTC
CTCGCCGTCAGCTTCGCTGCCGGGGGCGCCGTCGAGGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69671:94..633+

>mRNA_Ecto-sp13_S_contig69671.17978.1 ID=mRNA_Ecto-sp13_S_contig69671.17978.1|Name=mRNA_Ecto-sp13_S_contig69671.17978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69671:94..633+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTTGGTTGAAGGACCTCCCGAACGAGAGTTGCTGGAGCGAGTCCGG
CCACGCGACGTGGTTGATGGGGGCGTCGAAATGCTCGCCGAAGGTCAGCT
CTTCCAGAGAAGGCGGCCAGTTTATTTCGCCGCCTTTCGCTCCAAGCATC
GCCGTCGTCGGGGGAAGGTTGGAGTTCTTCGACCTGAGGGTGATCCGTTT
CAGCGTGGACGTCCAGGCCGCCCCGTGGAAGGGCTCGATCACCGCGGCCC
CGAAGGCCGCTCCCGGCAGCTCGGGACGGCGAAAGGAAACCTTCCCCAGC
GTGCTGCGCTCCCACACCATGGCCGCGATCCTGAGAGGGGGGACATCTCT
GTCCAGTGGAGCGTACGGGGAAGGGATCGATTCTCGCCTGGTCTCTTTCG
CTGCCTCCCTTTCCCACAAAGAGGGGAGACTCCAGCTGCACTCGCTACCG
TCCACATCGCTAGCGGCGGCGTCCTCGCCGTCAGCTTCGCTGCCGGGGGC
GCCGTCGAGGTTG
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