mRNA_Ecto-sp13_S_contig6967.17977.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6967.17977.1
Unique NamemRNA_Ecto-sp13_S_contig6967.17977.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6967.17977.1 vs. uniprot
Match: A0A6H5KYS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS6_9PHAE)

HSP 1 Score: 509 bits (1312), Expect = 7.590e-177
Identity = 248/274 (90.51%), Postives = 257/274 (93.80%), Query Frame = 1
Query:    1 DYADQFTSAACLGTGAFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAVGDCEIG---------DLSANDGGPHAWDEGWAFYTGSLEGTDLGGSGDGQMIYALAEKRCENFGTCSGDTDGSDATGVSEINSELLTLWEAGKANLLAGECTEASAVIDEIVPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSASILPWISACDPAVGTTVRDNTELGSASAPMADGYAAIKGQLESVYSCMGITCAQVGGLLDDTGAYYTDFEPCTD 795
            DYADQFTSAAC GTGAFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAV DCEIG         DLSANDGGPHAWDEGWAFYTGSLEGT +GGSGDGQM+YALAEKRCENFGTC+GD+DGSDATGVS INSELL LWE GKANLLAG+CT+ASAVIDEI+PLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSA+ILPWISACDPAVGT VRDNTELG ASAPMADGYAAIKGQLESVYSCMGITCAQVGGLLDDTGAYYT+FEPCTD
Sbjct:  277 DYADQFTSAACQGTGAFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAVEDCEIGGGCVKVAEGDLSANDGGPHAWDEGWAFYTGSLEGTAVGGSGDGQMLYALAEKRCENFGTCTGDSDGSDATGVSAINSELLDLWEDGKANLLAGQCTQASAVIDEILPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSAAILPWISACDPAVGTAVRDNTELGGASAPMADGYAAIKGQLESVYSCMGITCAQVGGLLDDTGAYYTNFEPCTD 550          
BLAST of mRNA_Ecto-sp13_S_contig6967.17977.1 vs. uniprot
Match: D8LQ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ42_ECTSI)

HSP 1 Score: 515 bits (1326), Expect = 8.870e-169
Identity = 250/267 (93.63%), Postives = 254/267 (95.13%), Query Frame = 1
Query:    1 DYADQFTSAACLGTGAFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAVGDCEIGDLSANDGGPHAWDEGWAFYTGSLEGTDLGGSGDGQMIYALAEKRCENFGTCSGDTDGSDATGVSEINSELLTLWEAGKANLLAGECTEASAVIDEIVPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSASILPWISACDPAVGTTVRDNTELGSASAPMADGYAAIKGQLESVYSCMGITCAQVGGLLDDTGAYYTDFEPCTDGA 801
            DYADQ+TSAAC GTG FEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAV DCE GDLSANDGGPHAWDEGWAFY GSLEGTD GGSGDGQMIYALAEKRCENFGTCSGDTDGSDATGVS INSELLTLWE GKANLLA ECTEASAVID+IVPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSASILPWISACD AVGT VRDNTELGSASAPMADGYAAIK QLE+VYSCMGITCAQVGGLLDDTGAYYTDFEPC DG+
Sbjct: 1220 DYADQYTSAACQGTGTFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAVVDCENGDLSANDGGPHAWDEGWAFYAGSLEGTDAGGSGDGQMIYALAEKRCENFGTCSGDTDGSDATGVSAINSELLTLWEVGKANLLAEECTEASAVIDQIVPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSASILPWISACDAAVGTAVRDNTELGSASAPMADGYAAIKTQLETVYSCMGITCAQVGGLLDDTGAYYTDFEPCDDGS 1486          
BLAST of mRNA_Ecto-sp13_S_contig6967.17977.1 vs. uniprot
Match: D8LFX4_ECTSI (Probable high CO2 inducible periplasmic protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFX4_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 1.050e-118
Identity = 170/266 (63.91%), Postives = 208/266 (78.20%), Query Frame = 1
Query:    1 DYADQFTSAACLGTGAFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAVGDCEIGDLSANDGGPHAWDEGWAFYTGSLEGTDLGGSGDGQMIYALAEKRCENFGTCSGDTDGSDATGVSEINSELLTLWEAGKANLLAGECTEASAVIDEIVPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSASILPWISACDPAVGTTVRDNTELGSASAPMADGYAAIKGQLESVYSCMGITCAQVGGL-LDDTGAYYTDFEPCTD 795
            DYADQFTS AC GT  F+ A + TR+E C+KGAQYQNVWMYV HEL DA+ DC+IG+L+ANDGGPHAWDEGW FY GSLEGT+  G+GDG M+YALAEKRCENF TC+ D DGSD TG +++NS++L L++ G+  LL G+C  A  V D+I+ LM VPL+QG+LRY Y ADP  G GGDK AAELWAFSA++LP I+ CD  V T VR NT++ SA APM++GY  +K QLESVYSCMGI+C+QVGGL + ++  YY  FEPC D
Sbjct:  113 DYADQFTSGACNGTEQFDDASVETRAEGCVKGAQYQNVWMYVIHELEDAIEDCDIGNLNANDGGPHAWDEGWGFYAGSLEGTE--GTGDGVMLYALAEKRCENFATCTADDDGSDITGTAQVNSDMLELYKEGQVYLLDGDCGAAGDVKDKIIDLMGVPLVQGMLRYFYNADPEAGDGGDKAAAELWAFSAAMLPRINECDEEVATLVRANTDIASADAPMSEGYVFLKEQLESVYSCMGISCSQVGGLVIGESTTYYDGFEPCGD 376          
BLAST of mRNA_Ecto-sp13_S_contig6967.17977.1 vs. uniprot
Match: D8LDE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE3_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 5.200e-91
Identity = 153/266 (57.52%), Postives = 181/266 (68.05%), Query Frame = 1
Query:    1 DYADQFTSAACLGTGAFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAVGDCEIGDLSANDGGPHAWDEGWAFYTGSLEGTDLGGSGDGQMIYALAEKRCENFGTCSGDTDGSDATGVSEINSELLTLWEAGKANLLAGECTEASAVIDEIVPLMAVPLIQGLLRYTYLADPAIGTGGD-KEAAELWAFSASILPWISACDPAVGTTVRDNTELGSASAPMADGYAAIKGQLESVYSCMGITCAQVGGLL--DDTGAYYTDFEPC 789
            DYAD+FTSAAC GTG++E  E V R+E C KGAQYQNVWMYV HE+ +AVG C  GD  A DGGPH WDE WAFY GSLEG      GDG+M+YALA+KRC NFGTC G  DG   TG + IN ++L L  AG   LL G+C EA    + IV LM VPL+Q  LRY Y ADPA    GD K  AELWAF+A+ILP I  C   V  TVR N+++ S  AP++ G+ A+K +LES+YSC+G+TC QVGGLL  D T  Y    EPC
Sbjct:  475 DYADRFTSAACTGTGSYETVEPVVRAEACTKGAQYQNVWMYVIHEMENAVGACNRGDNGAADGGPHHWDEAWAFYAGSLEGESGNADGDGKMLYALAQKRCGNFGTCGG-ADG--ITGTAAINDDILELIGAGSGYLLEGKCAEAEEAKESIVQLMTVPLVQATLRYLYRADPASDYDGDAKHWAELWAFAAAILPLIDECSADVAHTVRSNSDIDSEHAPVSAGFVAVKEELESIYSCLGMTCDQVGGLLAGDSTTDYVPGLEPC 737          
BLAST of mRNA_Ecto-sp13_S_contig6967.17977.1 vs. uniprot
Match: A0A7S2V1S6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S6_9STRA)

HSP 1 Score: 278 bits (711), Expect = 1.000e-85
Identity = 137/266 (51.50%), Postives = 176/266 (66.17%), Query Frame = 1
Query:    4 YADQFTSAACLGTGAFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAVGDCEIGDLSANDGGPHAWDEGWAFYTGSLEGTDLGGSGDGQMIYALAEKRCENFGTCSGDTDGSDA-TGVSEINSELLTLWEAGKANLLAGECTEASAVIDEIVPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSASILPWISACDPAVGTTVRDNTELGSASAPMADGYAAIKGQLESVYSCMGITCAQVGGLLDD-TGAYYTDFEPCTD 795
            YAD FTSAAC GTG +     + R ECC KGA YQNVWMYV HE+ DA+GDC+  DL+ ND G  AWDE  AFYTGSLEG D  G GDG ++Y+LA+KRC NFGTC+GD   S++ +G + +N  ++ L+  G   L  G+C E   V + IV  M +PL+QG LRY Y ADP     G+K  AELWAFSA++LP I+ CD  V + +R+N+ +G    PM DGY A+K  LE+ YSC+G  C+ VGG++D   G Y +  EPC D
Sbjct:  343 YADSFTSAACQGTGDYANVPDIVRVECCQKGAPYQNVWMYVIHEMEDAIGDCKSSDLTDNDSGVVAWDEAVAFYTGSLEGVD--GKGDGNLLYSLADKRCANFGTCTGDVGSSNSQSGRAAVNERIIDLFRDGSVKLHNGDCGEVEKVKNAIVDQMTIPLVQGTLRYLYKADPKGANEGNKARAELWAFSAAVLPRIAECDSGVASMLRENSYIGKD--PMKDGYVAVKEALETTYSCLGFMCSDVGGIIDGGAGNYISGMEPCED 604          
BLAST of mRNA_Ecto-sp13_S_contig6967.17977.1 vs. uniprot
Match: A0A7S1TU13_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU13_9STRA)

HSP 1 Score: 266 bits (679), Expect = 7.400e-84
Identity = 136/270 (50.37%), Postives = 172/270 (63.70%), Query Frame = 1
Query:    4 YADQFTSAACLGTGAFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAVGDCEIGDLSANDGGPHAWDEGWAFYTGSLEGTDLGGSGDGQMIYALAEKRCENFGTCSGDTDGSDATGVSEINSELLTLWEAGKANLLAGECTEASAVIDEIVPLMAVPLIQGLLRYTYLADPAIG--TGGDKEAAELWAFSASILPWISACDPAVGTTVRDNTELGSASAPMADGYAAIKGQLESVYSCMGITCAQVGGLL----DDTGAYYTDFEPCTD 795
            YAD    AA  GTG + GA+ V R E   K A Y   WMYV HE+ DA+ DC  GD+++ND   HAWDE W FY+G+LEG+   G+ DG + Y LAEKRC NFGTC+GD DG   TG S +N +LL+L++ G   L  G+C  A  ++  IV  M VPLIQG LRY Y ADP  G  T   K+ AE WAF++++LP I ACD  V + +R N E G AS P+ADGYAA+  +++ VYSC+GITCA VGG +    D T  Y +  EPC D
Sbjct:   23 YADDMVVAALDGTGIYAGADDVVREEIASKTAAYSVTWMYVIHEMEDAINDCNEGDITSNDDAVHAWDEAWVFYSGTLEGSSEEGNRDGVLAYRLAEKRCANFGTCNGDDDGDATTGKSLVNDQLLSLYKQGMHALEDGKCNSAEVILRAIVKQMTVPLIQGTLRYAYKADPNGGADTPASKQQAEGWAFTSAVLPQIDACDAGVASMIRANMEYGVAS-PVADGYAAVYAEMQKVYSCLGITCADVGGYVASVTDGTITYVSGTEPCDD 291          
BLAST of mRNA_Ecto-sp13_S_contig6967.17977.1 vs. uniprot
Match: A0A7S2XA87_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XA87_9EUKA)

HSP 1 Score: 260 bits (665), Expect = 2.290e-81
Identity = 136/266 (51.13%), Postives = 169/266 (63.53%), Query Frame = 1
Query:    1 DYADQFTSAACLGTGAFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAVGDCEIGDLSANDGGPHAWDEGWAFYTGSLEGTDLGGSGDGQMIYALAEKRCENFGTCSGDTDGSDATGVSEINSELLTLWEAGKANLLAGECTEASAVIDEIVPLMAVPLIQGLLRYTYLADPAIGTG-GDKEAAELWAFSASILPWISACDPAVGTTVRDNTELGSASAPMADGYAAIKGQLESVYSCMGITCAQVGGLLDDTGAYYTDFEPCTD 795
            +YAD FTS ACLG G F G + V + E C KG+ YQNVWMYV  E+ DA+ DC  GDLS N    HAWDE  AFY GSLEGTD  GSG G + YALAEKR   FGT + D       G + +N+E++ L++ G++ LLAG+C E   V D+IV  + VPL+QG LRY  L DPA     G K  AE WAF+ ++LP I+ C+P V   +R+N +  +   PM DGY  +K Q ESVYSCMGITC  VGGLL+    Y+   EPC D
Sbjct:  107 NYADVFTSDACLGQGQFAGVDQVAKKELCKKGSAYQNVWMYVVWEMQDAIDDCLGGDLSNNGAAVHAWDEAVAFYVGSLEGTD--GSGAGVLGYALAEKRAPQFGTANSD-------GSAIVNAEVMDLFKDGQSKLLAGKCAEVETVRDKIVAQITVPLVQGALRYALLTDPAGPIRQGAKGQAEGWAFAIAVLPQINRCNPTVAAEIRENLQYPNPQGPMVDGYRYVKQQFESVYSCMGITCDSVGGLLNGNEGYFDGMEPCRD 363          
BLAST of mRNA_Ecto-sp13_S_contig6967.17977.1 vs. uniprot
Match: A0A7S1IQR3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IQR3_9EUGL)

HSP 1 Score: 261 bits (666), Expect = 1.570e-78
Identity = 138/264 (52.27%), Postives = 170/264 (64.39%), Query Frame = 1
Query:    4 YADQFTSAACLGTGAFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAVGDCEIGDLSANDGGPHAWDEGWAFYTGSLEGTDLGGSGDGQMIYALAEKRCENFGTCSGDTDGSDATGVSEINSELLTLWEAGKANLLAGECTEASAVIDEIVPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSASILPWISACDPAVGTTVRDNTELGSASAPMADGYAAIKGQLESVYSCMGITCAQVGGLLDDTGAYYTDFEPCTD 795
            YA+ F  AA  GTG F G   V R E   KG  Y N WMYV  E+ DA+ DC  G L+ ND G HAWDE WAFY GSLEG D  GSG G   YALA+KRC +FGTC+       A+G S IN ++L L++ G A L AG+CT+A +V+  I   MAVPL+QG+LRY + ADP  G  G KE AE WAF+  ILP +  C  A  TTVR+N ++ SAS P++ G+AA+K  LESVY C+GITC  VGG+L+   +YY   EPC D
Sbjct:  438 YANDFVMAALEGTGVFAGKATVARQESVKKGISYGNTWMYVVVEMEDAIQDCTAGLLADNDKGVHAWDEAWAFYAGSLEGAD--GSGSGVQPYALADKRCVDFGTCT-------ASGGSAINRDILALFQDGLALLRAGKCTDARSVMTAITRKMAVPLVQGVLRYAWKADPVNGVSGPKEIAEGWAFTRGILPQVQQCSVAAATTVRNNMDIASAS-PVSGGFAAVKQALESVYPCLGITCGDVGGVLNGA-SYYAGMEPCRD 690          
BLAST of mRNA_Ecto-sp13_S_contig6967.17977.1 vs. uniprot
Match: A0A7R9Y8Q2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8Q2_9STRA)

HSP 1 Score: 255 bits (651), Expect = 2.910e-76
Identity = 138/280 (49.29%), Postives = 176/280 (62.86%), Query Frame = 1
Query:    1 DYADQFTSAACLGTGAFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAVGDCEIGD-LSANDGGPHAWDEGWAFYTGSLEGTDLGGSGDGQMIYALAEKRCENFGTCSGDTDGSDATGVSEINSELLTLWEAGKANLLAGECTEASAVIDEIVPLMAVPLIQGLLRYTYLADPAIG------TGGDKEAAELWAFSASILPWISACDPAVGTTVRDNTEL--GSASAPMADGYAAIKGQLESVYSCMGITCAQVGGLL----DDTGAYYTDFEPCTDGA 801
            DYADQF +AA  GTG +  +  + R E   KGA YQN WMYV HEL DAV DC+ G  ++  D   HAWDEGWAFY GSLE     G+G G  +YALAEKRC NF TC+GD DG  +TG S +N+ELL+L++ G+  L AG C  A+ V+ EIV  M VPLIQG+LRY YLAD +IG         + + AE WAF+A+++P + ACD A+   +R N E   G+ S P+ DGY  +  +++  YSC+GITCA VGG L    D    Y +   PC D A
Sbjct:   61 DYADQFVTAALDGTGPYVDSSDLVRDEIASKGAAYQNTWMYVIHELEDAVLDCQAGTPMNNEDPAVHAWDEGWAFYAGSLED----GTGSGVQVYALAEKRCANFFTCTGDDDGDASTGRSAVNAELLSLYQEGQLALNAGNCNGAALVVREIVKQMTVPLIQGVLRYAYLADQSIGGVQATPEEWEDDQAEGWAFTAAVMPQLDACDAALAAEIRANMEFVQGNTS-PVQDGYEVVYAKMQRFYSCLGITCADVGGYLSSVTDGVPTYVSGAGPCVDAA 335          
BLAST of mRNA_Ecto-sp13_S_contig6967.17977.1 vs. uniprot
Match: A0A7S1IQD7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IQD7_9EUGL)

HSP 1 Score: 225 bits (574), Expect = 9.080e-65
Identity = 122/249 (49.00%), Postives = 157/249 (63.05%), Query Frame = 1
Query:    4 YADQFTSAACLGTGAFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAVGDCEIGDLSANDGGPHAWDEGWAFYTGSLEGTDLGGSGDGQMIYALAEKRCENFGTCSGDTDGSDATGVSEINSELLTLWEAGKANLLAGECTEASAVIDEIVPLMAVPLIQGLLRYTYLADPAIGTG---GDKEAAELWAFSASILPWISACDPAVGTTVRDNTELGSASAPMADGYAAIKGQLESVYSCMGITCAQVG 741
            YAD F  AA  GTG F G   V+R E   KG+ Y N WMYV  EL DA+ DC+ G L+ ND G HAWDE WAFY GSLEG D  GSG G   YALA+KRC +F TC+       ++G S +N+ +L L++ G+A L+AG C  A A  D I   M VP++QG+LRY + ADPA       G KE AE WAF+  ILP + +C+P   T V+ N ++ +A+ PMADGY AI   +ES Y+C+GI+ + VG
Sbjct:  102 YADDFVMAALQGTGVFAGKPAVSREESAAKGSAYGNSWMYVQLELEDAIDDCKAGALADNDRGVHAWDEAWAFYAGSLEGVD--GSGSGVQPYALADKRCADFNTCT-------SSGGSAVNAAVLQLFKDGQALLVAGSCDAAQAKADAIARQMLVPMLQGMLRYAWKADPANSEEARRGPKEYAEGWAFARGILPQLDSCNPQGATLVQRNMDIAAAT-PMADGYQAILAVVESAYTCLGISSSHVG 340          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6967.17977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYS6_9PHAE7.590e-17790.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ42_ECTSI8.870e-16993.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFX4_ECTSI1.050e-11863.91Probable high CO2 inducible periplasmic protein n=... [more]
D8LDE3_ECTSI5.200e-9157.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V1S6_9STRA1.000e-8551.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TU13_9STRA7.400e-8450.37Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2XA87_9EUKA2.290e-8151.13Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S1IQR3_9EUGL1.570e-7852.27Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7R9Y8Q2_9STRA2.910e-7649.29Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1IQD7_9EUGL9.080e-6549.00Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6967contigEcto-sp13_S_contig6967:6..1420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score518.1
Seed ortholog evalue2.5e-144
Seed eggNOG ortholog2880.D8LQ42
Model size819
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs29F58@1,2RNAK@2759
Cds size819
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.280135-CDS-Ecto-sp13_S_contig6967:5..1061681463956.280135-CDS-Ecto-sp13_S_contig6967:5..106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6967 6..106 +
1681463956.290893-CDS-Ecto-sp13_S_contig6967:262..3301681463956.290893-CDS-Ecto-sp13_S_contig6967:262..330Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6967 263..330 +
1681463956.3013256-CDS-Ecto-sp13_S_contig6967:599..9271681463956.3013256-CDS-Ecto-sp13_S_contig6967:599..927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6967 600..927 +
1681463956.3120193-CDS-Ecto-sp13_S_contig6967:1098..14201681463956.3120193-CDS-Ecto-sp13_S_contig6967:1098..1420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6967 1099..1420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6967.17977.1prot_Ecto-sp13_S_contig6967.17977.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6967 6..1420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6967.17977.1

>prot_Ecto-sp13_S_contig6967.17977.1 ID=prot_Ecto-sp13_S_contig6967.17977.1|Name=mRNA_Ecto-sp13_S_contig6967.17977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=273bp
DYADQFTSAACLGTGAFEGAEMVTRSECCLKGAQYQNVWMYVTHELYDAV
GDCEIGDLSANDGGPHAWDEGWAFYTGSLEGTDLGGSGDGQMIYALAEKR
CENFGTCSGDTDGSDATGVSEINSELLTLWEAGKANLLAGECTEASAVID
EIVPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSASILPWISAC
DPAVGTTVRDNTELGSASAPMADGYAAIKGQLESVYSCMGITCAQVGGLL
DDTGAYYTDFEPCTDGATDSDSS
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mRNA from alignment at Ecto-sp13_S_contig6967:6..1420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6967.17977.1 ID=mRNA_Ecto-sp13_S_contig6967.17977.1|Name=mRNA_Ecto-sp13_S_contig6967.17977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1415bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6967:6..1420+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTACGCCGACCAGTTCACGTCGGCGGCATGCCTTGGAACTGGCGCCTT CGAAGGCGCTGAGATGGTCACGCGCTCGGAGTGTTGCCTCAAGGGAGCAC AGTGAGTGTTCGAGTCTCGAGTGCAGCATTTCGGTGTTGCTCTGCCCTGT CATCAGGATAGCCTTATCAAGTGAATCACTGCTCGCATATCGTATCTTTT AGTGAAGAAGCCTGTTTCTTCACGTCCCCACCCTTTCGTCCGTGTCCCGA CTTGCAGGTACCAGAACGTGTGGATGTACGTGACTCACGAGCTCTACGAC GCGGTCGGAGACTGCGAAATCGGAGGTTTGTGTCGTCATGTCGTTTCATG TCCTCTAGCTAGACGTGGTTGCTGCTTACCTTCTCGGTTCGTTTGGATGC GGAATGGAGAGATGTCTGGGTGCGGAATGGAGAGATGTCAACCCTGATGG CAGCCCTGAACGGTGCCGTAATTGCCTCACGGGAGTGGGGGATGTGTGCA CATCCGTCAGTCACGTTGATAGATACCGATCTGACCATGCTTCCTTTTTT CCATGTTGTGCCCATGAACCGTGGTGCCTGCACACGCTTGACAGATCTGT CCGCCAACGACGGTGGGCCGCACGCTTGGGACGAAGGGTGGGCGTTCTAC ACGGGTTCCCTCGAGGGCACCGACCTCGGAGGCTCGGGTGACGGGCAGAT GATCTACGCGCTGGCGGAGAAGAGGTGCGAGAACTTCGGGACGTGCTCGG GAGACACGGACGGCAGCGACGCGACGGGTGTATCGGAGATCAACTCTGAG CTGCTGACTCTATGGGAGGCTGGAAAGGCCAACCTGCTCGCCGGGGAGTG TACCGAGGCGTCGGCTGTGATCGACGAGATCGTGCCGCTCATGGCTGTTC CTCTTATCCAGGGTCTGCTGAGGTGTGTATGGCTATCTTGCATTGACCGC GACACGACTGACCATCCTGTTGTTGCAGGACATTCGAACCTCCCCCGCGC TCATATTATTTCAGCTCCCATTCTCCGATCAGTCAGGCTTTCAAGCCTAA CCCCTTCCTCTGTGTGGCGTCTGTCAAAAACTCTGATATACAGGTACACG TACCTTGCTGACCCCGCTATTGGGACGGGCGGCGACAAGGAGGCGGCCGA GCTCTGGGCCTTCTCCGCCTCCATCCTGCCGTGGATCAGCGCGTGCGATC CCGCGGTGGGGACTACCGTCCGCGACAACACCGAGCTCGGGAGCGCCAGC GCGCCCATGGCGGATGGGTATGCGGCGATCAAAGGGCAGCTGGAGAGCGT GTACTCTTGCATGGGCATCACGTGTGCCCAGGTTGGTGGTCTTCTCGACG ACACCGGCGCGTACTACACGGACTTCGAGCCATGCACAGACGGCGCGACC GATTCGGATTCCTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6967:6..1420+

>mRNA_Ecto-sp13_S_contig6967.17977.1 ID=mRNA_Ecto-sp13_S_contig6967.17977.1|Name=mRNA_Ecto-sp13_S_contig6967.17977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=819bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6967:6..1420+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTACGCCGACCAGTTCACGTCGGCGGCATGCCTTGGAACTGGCGCCTT
CGAAGGCGCTGAGATGGTCACGCGCTCGGAGTGTTGCCTCAAGGGAGCAC
AGTACCAGAACGTGTGGATGTACGTGACTCACGAGCTCTACGACGCGGTC
GGAGACTGCGAAATCGGAGATCTGTCCGCCAACGACGGTGGGCCGCACGC
TTGGGACGAAGGGTGGGCGTTCTACACGGGTTCCCTCGAGGGCACCGACC
TCGGAGGCTCGGGTGACGGGCAGATGATCTACGCGCTGGCGGAGAAGAGG
TGCGAGAACTTCGGGACGTGCTCGGGAGACACGGACGGCAGCGACGCGAC
GGGTGTATCGGAGATCAACTCTGAGCTGCTGACTCTATGGGAGGCTGGAA
AGGCCAACCTGCTCGCCGGGGAGTGTACCGAGGCGTCGGCTGTGATCGAC
GAGATCGTGCCGCTCATGGCTGTTCCTCTTATCCAGGGTCTGCTGAGGTA
CACGTACCTTGCTGACCCCGCTATTGGGACGGGCGGCGACAAGGAGGCGG
CCGAGCTCTGGGCCTTCTCCGCCTCCATCCTGCCGTGGATCAGCGCGTGC
GATCCCGCGGTGGGGACTACCGTCCGCGACAACACCGAGCTCGGGAGCGC
CAGCGCGCCCATGGCGGATGGGTATGCGGCGATCAAAGGGCAGCTGGAGA
GCGTGTACTCTTGCATGGGCATCACGTGTGCCCAGGTTGGTGGTCTTCTC
GACGACACCGGCGCGTACTACACGGACTTCGAGCCATGCACAGACGGCGC
GACCGATTCGGATTCCTCT
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