prot_Ecto-sp13_S_contig69657.17976.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig69657.17976.1
Unique Nameprot_Ecto-sp13_S_contig69657.17976.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length79
Homology
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI00141D85C7 (helix-turn-helix domain-containing protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI00141D85C7)

HSP 1 Score: 118 bits (296), Expect = 9.480e-33
Identity = 68/79 (86.08%), Postives = 71/79 (89.87%), Query Frame = 0
Query:    1 MPAIALTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALFPASRLRDGTR 79
            MP IAL REVGLLVRALRKR GLTQA LAERI RSE A+RAIERGASAPSFVTLERLAIAL+VPASALFP SRL+D TR
Sbjct:    1 MPTIALAREVGLLVRALRKRYGLTQADLAERIGRSEAAVRAIERGASAPSFVTLERLAIALQVPASALFPTSRLKDRTR 79          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI0004066131 (helix-turn-helix domain-containing protein n=2 Tax=Cucumibacter marinus TaxID=1121252 RepID=UPI0004066131)

HSP 1 Score: 57.8 bits (138), Expect = 5.220e-9
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 0
Query:    6 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 69
            L ++VG+ ++A+R+ + L+QA LAERIDR+  A+ AIERG S P + TLER+A AL VP +  F
Sbjct:    3 LRKQVGIRLKAIRQDKQLSQAELAERIDRTVDAVSAIERGKSLPGYETLERMATALGVPVTEFF 66          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: A0A2A5BV03_9PROT (Transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2A5BV03_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 1.610e-8
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0
Query:    6 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVP 64
            +T+ +GL +RALRK++GL+QA LAE IDRS  A+  +ERG S PS  TL RL   L +P
Sbjct:    3 ITKNIGLKIRALRKQKGLSQAKLAEMIDRSTEAISNLERGISLPSIETLVRLGQQLDIP 61          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: A0A2G2GGJ9_9PROT (HTH cro/C1-type domain-containing protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GGJ9_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 1.840e-8
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 0
Query:   10 VGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 69
            +G  V+A+RK++GLTQA LAE IDRSE AL  IERG + P   T+ER++I L VP    F
Sbjct:   12 IGRRVKAIRKQKGLTQAQLAELIDRSEDALSQIERGLNFPHVSTIERISIKLGVPLETFF 71          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI001AFD9BD4 (Helix-turn-helix transcriptional regulator n=1 Tax=Caulobacter sp. TaxID=78 RepID=UPI001AFD9BD4)

HSP 1 Score: 53.5 bits (127), Expect = 2.570e-7
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    6 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 69
            L  + G ++R  RKR GL+QA LAE+IDR   A++ +E G +AP+F TLERLA AL V    LF
Sbjct:    4 LEEQFGEMLRYHRKRAGLSQAQLAEKIDRQPNAVQRLESGEAAPTFDTLERLATALNVDVRELF 67          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI001C8931E0 (helix-turn-helix domain-containing protein n=1 Tax=Qipengyuania mesophila TaxID=2867246 RepID=UPI001C8931E0)

HSP 1 Score: 52.8 bits (125), Expect = 5.020e-7
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    9 EVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 69
            + G LV A R+RRGLTQAALAE  D SE  +  +E G +  SF T+E++A AL V A+ALF
Sbjct:    7 QFGNLVAAHRRRRGLTQAALAESCDLSEDMIARVEAGGTGASFKTIEKIADALGVSAAALF 67          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI001CDA3D6E (helix-turn-helix domain-containing protein n=1 Tax=Agrobacterium tomkonis TaxID=1183410 RepID=UPI001CDA3D6E)

HSP 1 Score: 52.0 bits (123), Expect = 9.800e-7
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0
Query:   11 GLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 69
            G  VR  RK RGLTQ ALAER++ S   +  IERG++AP+F T ERLA AL +  + LF
Sbjct:    8 GANVRNHRKARGLTQEALAERVEVSMETIGKIERGSTAPTFATAERLASALDIQVTVLF 66          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: A0A2G2GI76_9PROT (Transcriptional regulator n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GI76_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 1.500e-6
Identity = 32/65 (49.23%), Postives = 38/65 (58.46%), Query Frame = 0
Query:   14 VRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALFPASRLRDGT 78
            VR  R+  GLTQ ALA +I+R+  A+  IER  SAPS  TL  LA AL +P    FP     DGT
Sbjct:   13 VRHFRRSAGLTQEALATKIERTAEAISNIERARSAPSLETLIALAAALDIPMRDFFPTGSFEDGT 77          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: B3PHX4_CELJU (Adenine-specific DNA methyltransferase n=2 Tax=Cellvibrio japonicus TaxID=155077 RepID=B3PHX4_CELJU)

HSP 1 Score: 50.1 bits (118), Expect = 2.400e-6
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 0
Query:    6 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALF 69
            L ++ G  V+ LR  R +TQ  LAER+  +  ++  IERG   PSF TLE+LAIALRVP  +LF
Sbjct:    3 LKKQFGKRVQQLRFARKMTQEQLAERVGITIESISNIERGIYGPSFDTLEKLAIALRVPVQSLF 66          
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Match: UPI001EDF08B2 (helix-turn-helix transcriptional regulator n=1 Tax=Methylobacterium frigidaeris TaxID=2038277 RepID=UPI001EDF08B2)

HSP 1 Score: 50.4 bits (119), Expect = 3.980e-6
Identity = 34/74 (45.95%), Postives = 41/74 (55.41%), Query Frame = 0
Query:    6 LTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPSFVTLERLAIALRVPASALFPASRLRDGTR 79
            L +  GLLV A R+RRGLTQ ALAE+ D S   +  IE G +   F  +ERLA AL V  +  F      DG R
Sbjct:    4 LRKRFGLLVAAHRRRRGLTQEALAEKADLSVDMISRIEVGGTGARFPVIERLAAALEVDPAEFFTTQSHTDGMR 77          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69657.17976.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
UPI00141D85C79.480e-3386.08helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI00040661315.220e-951.56helix-turn-helix domain-containing protein n=2 Tax... [more]
A0A2A5BV03_9PROT1.610e-854.24Transcriptional regulator n=1 Tax=Alphaproteobacte... [more]
A0A2G2GGJ9_9PROT1.840e-855.00HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
UPI001AFD9BD42.570e-751.56Helix-turn-helix transcriptional regulator n=1 Tax... [more]
UPI001C8931E05.020e-754.10helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI001CDA3D6E9.800e-754.24helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A2G2GI76_9PROT1.500e-649.23Transcriptional regulator n=1 Tax=Robiginitomaculu... [more]
B3PHX4_CELJU2.400e-650.00Adenine-specific DNA methyltransferase n=2 Tax=Cel... [more]
UPI001EDF08B23.980e-645.95helix-turn-helix transcriptional regulator n=1 Tax... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001387Cro/C1-type helix-turn-helix domainSMARTSM00530mbf_short4coord: 13..68
e-value: 2.8E-11
score: 53.5
IPR001387Cro/C1-type helix-turn-helix domainPROSITEPS50943HTH_CROC1coord: 14..68
score: 14.329
NoneNo IPR availableGENE3D1.10.260.40coord: 3..74
e-value: 2.5E-17
score: 64.3
NoneNo IPR availablePFAMPF13560HTH_31coord: 10..66
e-value: 1.4E-12
score: 47.8
NoneNo IPR availablePANTHERPTHR46797FAMILY NOT NAMEDcoord: 8..70
IPR010982Lambda repressor-like, DNA-binding domain superfamilySUPERFAMILY47413lambda repressor-like DNA-binding domainscoord: 8..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69657contigEcto-sp13_S_contig69657:17..253 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69657.17976.1mRNA_Ecto-sp13_S_contig69657.17976.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig69657 17..253 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig69657.17976.1 ID=prot_Ecto-sp13_S_contig69657.17976.1|Name=mRNA_Ecto-sp13_S_contig69657.17976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MPAIALTREVGLLVRALRKRRGLTQAALAERIDRSEVALRAIERGASAPS
FVTLERLAIALRVPASALFPASRLRDGTR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001387Cro/C1-type_HTH
IPR010982Lambda_DNA-bd_dom_sf