mRNA_Ecto-sp13_S_contig69656.17975.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69656.17975.1
Unique NamemRNA_Ecto-sp13_S_contig69656.17975.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69656.17975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69656contigEcto-sp13_S_contig69656:142..444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score66.6
Seed ortholog evalue7.5e-09
Seed eggNOG ortholog1123008.KB905709_gene616
Preferred nametolB
Model size303
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.WD40-like Beta Propeller Repeat
EggNOG OGs22XUM@171551,2FQK8@200643,4NG4S@976,COG0823@1,COG0823@2
Cds size303
COG Functional cat.U
Best tax levelPorphyromonadaceae
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.2160103-CDS-Ecto-sp13_S_contig69656:141..4441681463956.2160103-CDS-Ecto-sp13_S_contig69656:141..444Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69656 142..444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69656.17975.1prot_Ecto-sp13_S_contig69656.17975.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69656 142..444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69656.17975.1

>prot_Ecto-sp13_S_contig69656.17975.1 ID=prot_Ecto-sp13_S_contig69656.17975.1|Name=mRNA_Ecto-sp13_S_contig69656.17975.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
IHAVSAEGNPYDTAPSWHRSGESVYFYSYRHGAAELYRMDPDGNHQTRLT
DTDYNEWWPLAVPMDGKVIVTSDRDSGGNFKGANLFLLDEASGDMHNLTN
V
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mRNA from alignment at Ecto-sp13_S_contig69656:142..444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69656.17975.1 ID=mRNA_Ecto-sp13_S_contig69656.17975.1|Name=mRNA_Ecto-sp13_S_contig69656.17975.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69656:142..444- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCACGCGGTTTCTGCCGAAGGCAACCCCTATGATACCGCGCCTTCCTG
GCACCGAAGCGGTGAATCTGTTTACTTCTACAGTTACCGGCACGGTGCCG
CCGAGCTTTATCGAATGGATCCGGACGGGAACCACCAGACGCGGCTGACC
GACACAGATTATAATGAATGGTGGCCTCTGGCCGTGCCGATGGACGGAAA
AGTCATTGTGACATCGGACCGGGATTCGGGTGGCAACTTCAAGGGGGCAA
ACCTGTTCCTGCTTGATGAAGCCAGCGGCGACATGCACAACCTGACAAAC
GTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69656:142..444-

>mRNA_Ecto-sp13_S_contig69656.17975.1 ID=mRNA_Ecto-sp13_S_contig69656.17975.1|Name=mRNA_Ecto-sp13_S_contig69656.17975.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69656:142..444- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCACGCGGTTTCTGCCGAAGGCAACCCCTATGATACCGCGCCTTCCTG
GCACCGAAGCGGTGAATCTGTTTACTTCTACAGTTACCGGCACGGTGCCG
CCGAGCTTTATCGAATGGATCCGGACGGGAACCACCAGACGCGGCTGACC
GACACAGATTATAATGAATGGTGGCCTCTGGCCGTGCCGATGGACGGAAA
AGTCATTGTGACATCGGACCGGGATTCGGGTGGCAACTTCAAGGGGGCAA
ACCTGTTCCTGCTTGATGAAGCCAGCGGCGACATGCACAACCTGACAAAC
GTC
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