mRNA_Ecto-sp13_S_contig6964.17974.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6964.17974.1
Unique NamemRNA_Ecto-sp13_S_contig6964.17974.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6964.17974.1 vs. uniprot
Match: D7FLK3_ECTSI (AAA ATPase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK3_ECTSI)

HSP 1 Score: 587 bits (1513), Expect = 1.140e-198
Identity = 318/338 (94.08%), Postives = 322/338 (95.27%), Query Frame = 1 
Query:   13 ESAAQRFRAAIVRQGSELVFFRVTELRGAGTRDGGGGRSNGVASLGLAAGNDDRGEQEGSSEAEAAGGMVVSQRVTELREGGPICSPVPETLRYQRFVCRANGYPCPEAKPPFDERCVEAVVAALAPVVGPEAFRLLVVSRSRPAVLLHGPGATEGGGSLVEAAAERLGMHVRTVAMRSVLGSAPHAGGAGFAVGGAAGALRQEFQAAMEASPCVLHLRAITSLAAGARQDPGGEEADERFVESLSACLEEIDSAAAAAAATMPGEGRGSWRVQERGRSLPSSSSAAAGTVVLVGSAESLERVPASLRRCFTHEVLAPFPPEKLRLSLLEHHLGGVTT 1026
            ES AQRFRAAIVRQGSELVFFRVTELRGAGTR GG GRS+  ASLGLAAGND+R EQEGS EAEAA GMVVSQRVTELREGGPICSPVPETLRYQRFVCRANGYPCPEAKPPFDERCVEAVVAALAPVVGPEAFRLLVV+RSRPAVLLHGPGA EGGGSLVEAAAERLGMHVRTVAMRSVLGSAPHAGGAGFA GGAAGALRQEFQAAMEASPCVLHLR ITSLAAGARQDPGGEEADERFVESLSACLE+IDSAAAAAAATMPGEGRGS RVQERGRSLPSSS  AAG VVLVGSAESLERVP SLRRCFTHEVLAPFPPEKLRLSLLEHHLGGVTT
Sbjct:  338 ESVAQRFRAAIVRQGSELVFFRVTELRGAGTRGGGAGRSSEEASLGLAAGNDERFEQEGSPEAEAAAGMVVSQRVTELREGGPICSPVPETLRYQRFVCRANGYPCPEAKPPFDERCVEAVVAALAPVVGPEAFRLLVVARSRPAVLLHGPGAAEGGGSLVEAAAERLGMHVRTVAMRSVLGSAPHAGGAGFAAGGAAGALRQEFQAAMEASPCVLHLRGITSLAAGARQDPGGEEADERFVESLSACLEKIDSAAAAAAATMPGEGRGSRRVQERGRSLPSSSYVAAGAVVLVGSAESLERVPVSLRRCFTHEVLAPFPPEKLRLSLLEHHLGGVTT 675
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6964.17974.1 vs. uniprot
Match: A0A6H5JDF2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDF2_9PHAE)

HSP 1 Score: 553 bits (1425), Expect = 3.900e-187
Identity = 312/387 (80.62%), Postives = 320/387 (82.69%), Query Frame = 1 
Query:   13 ESAAQRFRAAIVRQGSELVFFRVTELRGAGTRDGGGGRSNGVASLGLAAGNDDRGEQEGSSEAEAAGGMVVSQRVTELREGGPICSPVPETLRYQRFVCRANGYPCPEAKPPF-------------------------------------------------DERCVEAVVAALAPVVGPEAFRLLVVSRSRPAVLLHGPGATEGGGSLVEAAAERLGMHVRTVAMRSVLGSAPHAGGAGFAVGGAAGALRQEFQAAMEASPCVLHLRAITSLAAGARQDPGGEEADERFVESLSACLEEIDSAAAAAAATMPGEGRGSWRVQERGRSLPSSSSAAAGTVVLVGSAESLERVPASLRRCFTHEVLAPFPPEKLRLSLLEHHLGGVTT 1026
            ESAAQRFRAAIVRQGSELVFFRVT LRGAGTR G GGRS+  ASLGLAAGND++ EQEGSSEAEAAGGMVVSQRVTELREGGP+CSPVPE  RYQ+FVCRANG+PCP  KPPF                                                 DERCVEAVVAALAPVVGPEAFRLLVV+RSRPAVLLHGPGA +GGGSLVEAAAERLGMHVRTVAMRSVLGSAPHAGGAGFA GGAAGALRQEFQAAMEA PCVLHLRAITSLAAGARQDPGGEEADERFVESLSACLEEIDSAAAA   TMPGEGRGS RVQERGRSLPSSSS AAGTVVLVGSAESLERVPASLRRCFTHEVLAPFPPEKLRLSLLEHHLGGVTT
Sbjct:  278 ESAAQRFRAAIVRQGSELVFFRVTGLRGAGTRGGDGGRSSEEASLGLAAGNDEKLEQEGSSEAEAAGGMVVSQRVTELREGGPVCSPVPEISRYQQFVCRANGFPCPATKPPFALLRMEMSKISKCNGAVRAYIKQCGWSAVAGRCLHARTGNVARHDNSSTDERCVEAVVAALAPVVGPEAFRLLVVARSRPAVLLHGPGAAQGGGSLVEAAAERLGMHVRTVAMRSVLGSAPHAGGAGFAAGGAAGALRQEFQAAMEAYPCVLHLRAITSLAAGARQDPGGEEADERFVESLSACLEEIDSAAAAXXXTMPGEGRGSGRVQERGRSLPSSSSVAAGTVVLVGSAESLERVPASLRRCFTHEVLAPFPPEKLRLSLLEHHLGGVTT 664
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6964.17974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLK3_ECTSI1.140e-19894.08AAA ATPase domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JDF2_9PHAE3.900e-18780.62AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6964contigEcto-sp13_S_contig6964:2..6284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score594.3
Seed ortholog evalue3.5e-167
Seed eggNOG ortholog2880.D7FLK3
Preferred namePEX6
Model size1027
KEGG koko:K13339
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorymitochondrion
GOsGO:0001302,GO:0001881,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007568,GO:0007569,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016042,GO:0016043,GO:0016054,GO:0016462,GO:0016558,GO:0016562,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019395,GO:0019752,GO:0023051,GO:0030258,GO:0032502,GO:0032787,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0042579,GO:0042886,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0044743,GO:0045184,GO:0046395,GO:0046907,GO:0046982,GO:0046983,GO:0048869,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055114,GO:0065002,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:1901575
Exons5
EggNOG free text desc.peroxisome organization
EggNOG OGsCOG0464@1,KOG0736@2759
Cds size1026
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.1298225-CDS-Ecto-sp13_S_contig6964:1..731681463956.1298225-CDS-Ecto-sp13_S_contig6964:1..73Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6964 2..73 -
1681463956.1460001-CDS-Ecto-sp13_S_contig6964:1266..15321681463956.1460001-CDS-Ecto-sp13_S_contig6964:1266..1532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6964 1267..1532 -
1681463956.1621914-CDS-Ecto-sp13_S_contig6964:3031..32061681463956.1621914-CDS-Ecto-sp13_S_contig6964:3031..3206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6964 3032..3206 -
1681463956.1770325-CDS-Ecto-sp13_S_contig6964:3665..38271681463956.1770325-CDS-Ecto-sp13_S_contig6964:3665..3827Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6964 3666..3827 -
1681463956.1888645-CDS-Ecto-sp13_S_contig6964:5933..62841681463956.1888645-CDS-Ecto-sp13_S_contig6964:5933..6284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6964 5934..6284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6964.17974.1prot_Ecto-sp13_S_contig6964.17974.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6964 2..6284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6964.17974.1

>prot_Ecto-sp13_S_contig6964.17974.1 ID=prot_Ecto-sp13_S_contig6964.17974.1|Name=mRNA_Ecto-sp13_S_contig6964.17974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=342bp
RRRRESAAQRFRAAIVRQGSELVFFRVTELRGAGTRDGGGGRSNGVASLG
LAAGNDDRGEQEGSSEAEAAGGMVVSQRVTELREGGPICSPVPETLRYQR
FVCRANGYPCPEAKPPFDERCVEAVVAALAPVVGPEAFRLLVVSRSRPAV
LLHGPGATEGGGSLVEAAAERLGMHVRTVAMRSVLGSAPHAGGAGFAVGG
AAGALRQEFQAAMEASPCVLHLRAITSLAAGARQDPGGEEADERFVESLS
ACLEEIDSAAAAAAATMPGEGRGSWRVQERGRSLPSSSSAAAGTVVLVGS
AESLERVPASLRRCFTHEVLAPFPPEKLRLSLLEHHLGGVTT
back to top

mRNA from alignment at Ecto-sp13_S_contig6964:2..6284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6964.17974.1 ID=mRNA_Ecto-sp13_S_contig6964.17974.1|Name=mRNA_Ecto-sp13_S_contig6964.17974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6283bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6964:2..6284- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGACGACGCGAATCTGCGGCTCAGAGGTTCAGGGCCGCGATCGTTCG
GCAAGGCTCTGAGCTTGTGTTCTTTCGCGTCACGGAGCTGCGGGGAGCGG
GTACCCGCGACGGCGGTGGCGGAAGGTCTAATGGAGTCGCATCGCTAGGA
CTCGCCGCTGGCAACGACGACAGGGGTGAGCAAGAGGGCAGCTCAGAGGC
GGAGGCGGCGGGAGGAATGGTGGTTAGCCAGCGCGTGACGGAGCTGCGGG
AGGGAGGGCCGATCTGCTCGCCGGTGCCGGAGACCTTGCGTTACCAGCGG
TTCGTCTGCCGGGCGAACGGATACCCTTGCCCCGAGGCCAAGCCGCCTTT
CGTGAGTGCAGTCGCAGTATCATAGCTGGCGTTGGAGATGTGTGAGTTTG
TTGCTACTTCGGGGCCGGAGATTGTTGGTGGCGGTTATACAACCATCCTG
TCGGTTCTGGCGGGGGGGAGTTTCCACGCCGTTTTTAGCCGTCCGTCGCG
CAATCCGCTCGCTGGCTTTAGAGCGGCCATCCAACCGCACTATCCACCTT
GCCTGTACGTAGCCCTACGTGCCATCATGGTGTGATAGGTTCACCTTCCT
ACCCTCGAGCGCGTGTGATTTTGTTTGATGCTTACATGCTGCAGAGCGAT
CGGTGTCCACTTGTCATGGCATTTGAGCATTTAACCTAAGAAACAATATG
GCGGGTAATCTTGCACAGATCACCGACCTCCTGCCGAGATCTCTTCCGTG
CCGTGTTCACACCAGCAGCAGGCCAGTTGTTGTTTTGCAGCAGCCATCAA
CATACAAGTCCCCTCTTGTGCCCTCTTGTTCAGTGTTGCCCCTTGGTGGA
GCAATCGAGCTCGAGAAATAGGTTCAGGCGGTGTGGTATCTTATCCTAGC
CTACGGAATGCTTCCTCCAGGACGCACCACGCACCACCCTCAGCGACACA
TATCCAGCACAACTTGTGCGACGTTTTTGACGACTTGGCCTCTGAGCGTT
ACCGTTTAATCTTGCCTCGTGTGGTCCAGCCACGCGCAGGGGGCAAAAAA
ATAGAGCCGCCTCCTAGAGGGTGACAACCCTTGCAGCCTCTGCCAGCAGT
GGCATCCCTGGCTGAAGTCGAAGTCCACTTGAGACGATTGACGCGTCCGT
CACTAGCAGAGCGGGCAGCGCCGGTTGTCGCACACCCAACAGCGTCGCTG
CCCGCTCTTCTCTCGACGGATACCTCGCTCGTCGCAAAATGGGCTTGTAG
TTCAGACAGGGACACCATTGCTGGCAGAAGCCTCAGACATCATCAGTCAG
GGCGGCGGCTTTGGTCTGCTTCATCTGTGTGTGTGTGGACCACAAGGGGC
AAGACAAACGGTCGCACTCAAAAGGCCAGCATCGGTCCACCCGCGTCCGC
GGGCTTTGCTCCGCATGGAGATGTCGGAGATCTCCAAGTAATACATTCCT
CAAGCTTGGAGATGCCCTAGGGACAACGGTGGTGCTGTAGTGCTCTAGTT
GTAATATTCTTTCGCAGTCGTCGCGACAAGCGGTGCGTTCGTCTTTTTCC
CCGTTTTTCAAGTACTGCACGTCGAAGGATCAGGGCACGGCTCTTTAGTT
GTTCTTTTTCTTTATCGATGGTGGGGAAGACGTCTCCTCCTCCCGCACAT
TTTCCTCAGGAGCAACAGTGCGCACCCCTGTCGTACACGCGTTGTGTGCG
ACCAAATGATTGATTATTTATTGCCCCTCTCTCTTTTTTTTTGTCGCACA
TGTTCGAAATTTATCAGAGCGTCTCTTTTTGTTTCACAGGCGAGCGCGAA
CTGTGTGTTGCGCACGTCTCCATTGCGTTAATCCACCCGCGTTAGGTGCA
ATGGGGCGGTGCGTGCATGCGTAAGACAGGTGAACACGGACGCTTGTGCA
CTGACACACTGTTTCTCTCGCAGTGCGGTAAGAGTAGTGGTAGCGGGGCG
GTGCCTGCATGCACGAACAGTCAAACATGGAACGCTTGCGAATGTGTACA
CCGTTTCTCTCGCCGCACAGCCGTAGAAGTAGCGGGACTGTGCATTATTC
AAACGAACACCTCTCTTTCCTCTTGTTATTTTTTCTCGCTCGTTATACGG
AGGGCAGCGCTGCTCTTCAGTACGCTCACTGCTCTACCACGACCGTACCA
ATCCAACGGTGCGGTATCAGGGAACGTCGCACGACACGACAACAGCTCCA
CCGTAAGGGCAACTGCACCCGCCGCGTCCTCTCACGCCTGACGGCGGCCC
GGTGACTTCGTCTCGCGTACTCTCGCGCGGAATCCGGCAACATCGCACGA
CACGACAACAGCTCCTACCACAACAGCACCTGCACCGCCGCTTCCTCTCA
CACCCGACTGCGGTCCGTTGACCCCGCCGCTTGCTCTCCCGCCTGACTGC
GGTCCGGTAACTTCGTCTCGCGCACTCTAACTTTTTCTTGTTGTTCTCGC
TTTATAGGACGAGCGCTGCGTGGAGGCGGTGGTTGCCGCGCTGGCCCCGG
TCGTAGGTCCGGAGGCGTTTCGGCTGCTGGTGGTGTCCCGCTCGCGGCCC
GCGGTGCTGCTCCACGGCCCCGGGGCCACGGAAGGCGGCGGGAGCCTTGT
GGAGGCGGCGGCAGAGCGGGTAGGGCGTTCTTCTCTCGCGCGACCGCCGT
TGTGCCTGTATACCTTGTGGGCGCTGTATTTTCAGATTCACCCGTTCTTC
GTATAGAGCAGTTTGTTTAACCCAAGATATGTCGAGTGATTCTGATGTAC
CCTGTGCCACATCGGGTTGCTGCTCTGCTGTAGACTCAAAGAGCGGCGGA
CCATACGCCGATTTTGTATTTTCCTCCAACCGAAAGTGTCGTGGGCGCCC
CAAAATACGTGTTCGTCGTTTTCCCGTTGTGCTCATGCTTGTACGGTTAC
GTGTTGTCGCTCAAGTACGCTTGAAACCTGCAAAGTATCACGAGAGAGAG
TCATCATCACCCTTGTCATGGATTTTTGTTCATGTTTGTTGACGATGGAC
AGATGGCAGCCGTTCTTCCTTCTACCTCCCTCTCGCTCGCTGGCCCGCCC
TCGCGCTCGGTTATCTTGGCTGCCGCAGCTCGGGATGCACGTCCGGACCG
TGGCCATGCGCTCGGTCCTCGGATCAGCCCCGCATGCCGGCGGGGCGGGT
TTCGCGGTCGGGGGCGCGGCTGGGGCGCTGCGGCAGGAGTTCCAAGCAGC
CATGGAGGCGTCTCCGTGCGTGCTCCACCTCCGCGCCATCACAAGCTTAG
CCGGTGAGTAGGCATTCCGACATGTCTTCCAACACACATGTATCCGAGTT
GAAATTCCAAGCATTCGCTCATGTCGGAGTTCTATGTAATTATTGGTGCA
ATCTGTGTTTCCTGTTTCAACGGATCGACCAAGCAGTCAGCGGGTTCTTT
GTGTATATTCACAGTCCCGAGCAAGTTACCCCGCCAAATATCCAACTAGA
CCTTTTTTGATGACAGAGTGGTGGCTGCTAGCCGTTGGGTGCTGTTGTGT
CGGTTTCTACTTCTGCGGTGAACTTTAATATGTGCTTGTTGTTATGTCCC
CACAATCATTGTTTTAGGGAAAATACATATAACACAAAGGTTATTGCACC
AATGAGCGGACGAAATTGAAAGCTGGCCACGTCACTCCTAGTAGAGTGAC
AGGGTGGGTTGGATGAAGTGTTATGATGGTACGGTTTTCTCCGCGACCGC
ACGATGAGCAAGCGCATGCTCCCGGACGCGTTCTTGAAAGCTTGAATCGG
ACCACTACCAGTAGACCTCATGACGAAGGCAGCAGAAAAGCAACCAGAGC
ACGATGTTCAGTGGCCAAAGCCGCCGATACACCGCACTGAAAGATTCTCT
TGTCGTTTTTGATGGTGCAAGACGAACGCAAGGCTTTTGCTGTAGTTGTG
CGAGTGATTGCACAAGCCGTAGACTGACTTTGAAGATCTCGATTTTCTGC
ACAGCCGAGACGGCGAAAACGGACCGTTTCATGCAAGCTTGCAACCAAGC
TGTTGTCCAGACCTTCATTTTTCCAAGGCAACTATTTTCGCCTTTGACAA
CCTCTTGGTTGTGGGGCAATCGAGCAAGGAAATTCGGTCTTCGGGGGGGT
GCGGTCAGTCGCACCAGTACGTTTTTGGTTTTCACTTTACGAATGACATG
GGTATTAGGACTAGTGCGATGACGTGCCAATCACGACCAAAACTACCCGC
ACCAAGTTACAGCAACTACGTGGCACCCTCTCAGTTCGAATCTTTCTGTT
TCTTCGGACCCTGGCTTGCGAACACCAACAACATCCGGAACCATTGTATT
TCTTCGAATCCTGGCTTGCCGTTACAACATTTCCATAACTAGGCACCGCA
ACTACTGTGGCCCTCTCTCAGCTACACCTACTTGATTTCTTCGAACCCTT
ACTTGCCGTTACGAAACCATAGCTAAAATGGGAACCGCAACGAAGTAGCC
CTCTCTTGTCTGAAACCATTCTACCTCATTGAGCCCTGGCTTGCTGCGAC
CGAACTATCCTGAGTTAGGCACCGCGACTTTTGCAGCCCTCTCATCTGAA
ACCGTTTTCCCTTACAAAAATATGCGGAGCTAGGCAACGCAACTGTTGTC
ACCCTCTCTCATTTGAGCTATTCCATTTCTTTGAACCCTGGCTTACCGCT
ACGAAAATGTCCAGAGCTGCATAGACAACGCAACTGCTGTTGCCCTCTCA
CTTACAACTATTTTCTATTTCTTCGGCCCCTGGCTTACCGTTACAAAAAT
AGCCGGGGCAAGGCAGGACCCCGGCGGGGAGGAAGCCGACGAGCGGTTCG
TCGAGTCGCTTTCCGCGTGCTTAGAAGAAATTGATAGCGCGGCGGCTGCT
GCTGCTGCTACGATGCCGGGAGAAGGGCGGGGGTCCTGGCGTGTGCAAGA
GAGAGGTCGATCACTCCCGTCTTCATCGTCTGCGGCGGCGGGGACGGTGG
TGCTGGTGGGGAGCGCCGAATCGCTCGAGAGAGTGCCTGCATCGCTTCGG
CGGTGCTTCACGCATGAGGTGGGTAGGTGTTGCTGCTGTGAGCTCGATCA
GTCCTGCCAAAGAACCCCGGAAAAGGTCGTCGTTTACCGTTGTCCACTTG
ACGTACCCTGCACTGACTGTCCCTGGTGTCATTTGAATCGCCAGTGCCTC
ATACATGAGGTTTGTTGCGATGCCTGACGCGAAAGTGATCATGCCTCTTG
AACAATTACAAGTTGGGTCCCGTTGCACACCAAGTACAGCAATGGGGTTG
ATTCATTTTGATGCGTCGTGTTGCTAGTGTTGAGGTGGTTGTTTGTTTCA
TGACGTGCTGATTTTATCCTTTTTTGCTACGGAAGCTGCGGGACCATCTG
AAAGATAGTGGAGGGGGTGGGACATTCTGTGGATTGCCTCTAGACTAGAC
TTATCGATGCCATCTTCAGTGGAGACAAACCTATGGGTTTGAGATTTCCA
CCAAACAATAAAACGACCGGTTCTGGAGACTGGGAAGACTTCGAAGAATG
GTCTTCTGCTGGGAGGAAGTTTCACTCGTAAAGTTGCTCAATTTTGTTGT
CCGTTTATCGTGGCCTTAAGATTGGAAATTTTGCTAGTACCACACGCGGA
CGTTTCGATGAGCGGGATATGCAGCTAGCTCTCTTTGTGCCACTACTCGG
TCAATTTTCCCCCTCTGGTCAGCTCGCGAGCACCAATGTGTGGAGAGACA
CCTTCTTCCCTCTTGACTTGTTGTGTAGGCTATTAGTGTCGTCGTGGCGA
GAGATATGACAAATAGACACAAAACAGCGGCACGAAAGTGGAACACGTTC
GCGGCGAAGCGCTTCGGAGGATACCGCCATTCGCACTCGCCACCCCGCCA
CCACCATCGCCGTATTCGTCGTTTTGTGGGATGCTATCCTTCTGCTTGCC
TTCTTCGCTTCGTCCCTACAGACTGTCGCCAATTTCCTTGCCAACCCCAA
CGAAGCGTTGCGGAAATTTTGAATTTTGGCCAAAAGTGACGCCACCCGGC
TGGTGTAGATTTTGGACCTGGAGCAGAACATACTTGCCACCTTTGCAGGT
TTTCGACACGTAGCCGAAGAAACAATTTTGAACCGCCGACTTTCGACTTT
GTAGCCCAAAAACAAATTTGAGCCGTTGATTGAACGCCAACGTCCCTATC
TCCCACAGAAGCAGCGCCTCATTTGCCGTTTTTTTTATTCTTGTCGTGTA
TGTATGCATAGGTGCTGGCCCCTTTCCCCCCTGAAAAGCTCCGACTGTCT
CTTCTGGAGCACCACTTGGGAGGTGTGACGACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6964:2..6284-

>mRNA_Ecto-sp13_S_contig6964.17974.1 ID=mRNA_Ecto-sp13_S_contig6964.17974.1|Name=mRNA_Ecto-sp13_S_contig6964.17974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6964:2..6284- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGACGACGCGAATCTGCGGCTCAGAGGTTCAGGGCCGCGATCGTTCG
GCAAGGCTCTGAGCTTGTGTTCTTTCGCGTCACGGAGCTGCGGGGAGCGG
GTACCCGCGACGGCGGTGGCGGAAGGTCTAATGGAGTCGCATCGCTAGGA
CTCGCCGCTGGCAACGACGACAGGGGTGAGCAAGAGGGCAGCTCAGAGGC
GGAGGCGGCGGGAGGAATGGTGGTTAGCCAGCGCGTGACGGAGCTGCGGG
AGGGAGGGCCGATCTGCTCGCCGGTGCCGGAGACCTTGCGTTACCAGCGG
TTCGTCTGCCGGGCGAACGGATACCCTTGCCCCGAGGCCAAGCCGCCTTT
CGACGAGCGCTGCGTGGAGGCGGTGGTTGCCGCGCTGGCCCCGGTCGTAG
GTCCGGAGGCGTTTCGGCTGCTGGTGGTGTCCCGCTCGCGGCCCGCGGTG
CTGCTCCACGGCCCCGGGGCCACGGAAGGCGGCGGGAGCCTTGTGGAGGC
GGCGGCAGAGCGGCTCGGGATGCACGTCCGGACCGTGGCCATGCGCTCGG
TCCTCGGATCAGCCCCGCATGCCGGCGGGGCGGGTTTCGCGGTCGGGGGC
GCGGCTGGGGCGCTGCGGCAGGAGTTCCAAGCAGCCATGGAGGCGTCTCC
GTGCGTGCTCCACCTCCGCGCCATCACAAGCTTAGCCGCCGGGGCAAGGC
AGGACCCCGGCGGGGAGGAAGCCGACGAGCGGTTCGTCGAGTCGCTTTCC
GCGTGCTTAGAAGAAATTGATAGCGCGGCGGCTGCTGCTGCTGCTACGAT
GCCGGGAGAAGGGCGGGGGTCCTGGCGTGTGCAAGAGAGAGGTCGATCAC
TCCCGTCTTCATCGTCTGCGGCGGCGGGGACGGTGGTGCTGGTGGGGAGC
GCCGAATCGCTCGAGAGAGTGCCTGCATCGCTTCGGCGGTGCTTCACGCA
TGAGGTGCTGGCCCCTTTCCCCCCTGAAAAGCTCCGACTGTCTCTTCTGG
AGCACCACTTGGGAGGTGTGACGACG
back to top