mRNA_Ecto-sp13_S_contig69635.17973.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69635.17973.1
Unique NamemRNA_Ecto-sp13_S_contig69635.17973.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69635.17973.1 vs. uniprot
Match: D8LIV8_ECTSI (Cir_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIV8_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 5.130e-46
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 GRRVNPGVSLAEQQERFPFLKDAPVEHAYAAGVKVNFKPFNNVIRHVRCMRCGEWGHRSGDRECSVDENPHD 216
            GRRVNPGVSLAEQQERFPFLKDAPVEHAYAAGVKVNFKPFNNVIRHVRCMRCGEWGHRSGDRECSVDENPHD
Sbjct:  153 GRRVNPGVSLAEQQERFPFLKDAPVEHAYAAGVKVNFKPFNNVIRHVRCMRCGEWGHRSGDRECSVDENPHD 224
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BLAST of mRNA_Ecto-sp13_S_contig69635.17973.1 vs. uniprot
Match: A0A5D6XYB1_9STRA (Cir_N domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYB1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.340e-25
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 GRRVNPGVSLAEQQERFPFLKDAPVEHAYAAGVKVNFKPFNNVIRHVRCMRCGEWGHRSGDRECSV-DENPHD 216
            GRR +  +++  Q ERFPFLKDAPVE  Y   VKVNFKP    +R+VRCMRCGEWGH+SGDREC++ D NPHD
Sbjct:  513 GRRPDENLTIKAQVERFPFLKDAPVEGQYTDAVKVNFKPMGKQLRNVRCMRCGEWGHQSGDRECALRDANPHD 585
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BLAST of mRNA_Ecto-sp13_S_contig69635.17973.1 vs. uniprot
Match: A0A8K1C5M5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5M5_PYTOL)

HSP 1 Score: 103 bits (256), Expect = 1.780e-24
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 GRRVNPGVSLAEQQERFPFLKDAPVEHAYAAGVKVNFKPFNNVIRHVRCMRCGEWGHRSGDRECSV-DENPHD 216
            GRR +  +++ EQ ERFPFLKDAPVE  Y + VKVNFKP    +R+VRC+RCG+WGH+SGDREC++ D+NP D
Sbjct:  131 GRRPDEPLTIKEQVERFPFLKDAPVEGNYTSSVKVNFKPMGRQLRNVRCLRCGQWGHQSGDRECAMRDQNPLD 203
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BLAST of mRNA_Ecto-sp13_S_contig69635.17973.1 vs. uniprot
Match: A0A024GR32_9STRA (Cir_N domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GR32_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.780e-24
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 GRRVNPGVSLAEQQERFPFLKDAPVEHAYAAGVKVNFKPFNNVIRHVRCMRCGEWGHRSGDRECSVDE-NPHD 216
            GRR +  +++ EQ ERFPFLKDAPVE  Y   VKVNFKP    +R+VRC+RCGEWGH SGDREC +   NPHD
Sbjct:  133 GRRPDESLTIDEQVERFPFLKDAPVEGDYTGNVKVNFKPMGVQLRNVRCLRCGEWGHLSGDRECELRNFNPHD 205
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BLAST of mRNA_Ecto-sp13_S_contig69635.17973.1 vs. uniprot
Match: K3X636_GLOUD (Cir_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X636_GLOUD)

HSP 1 Score: 102 bits (254), Expect = 3.490e-24
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 GRRVNPGVSLAEQQERFPFLKDAPVEHAYAAGVKVNFKPFNNVIRHVRCMRCGEWGHRSGDRECSV-DENPHD 216
            GRR +  +++  Q ERFPFLKDAPVE  Y   VKVNFKP    +R+V+C+RCGEWGH+SGDRECS+ D NPHD
Sbjct:  130 GRRPDENLTIKTQVERFPFLKDAPVEGEYTDSVKVNFKPVGVQLRNVKCIRCGEWGHQSGDRECSLRDFNPHD 202
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BLAST of mRNA_Ecto-sp13_S_contig69635.17973.1 vs. uniprot
Match: A0A1W0A6W9_9STRA (Cir_N domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6W9_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.470e-24
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 GRRVNPGVSLAEQQERFPFLKDAPVEHAYAAGVKVNFKPFNNVIRHVRCMRCGEWGHRSGDRECSVDE-NP 210
            GRR N  VS+ EQ ERFP LKDAPVE  Y + +KVNF+P    +R+++C+RCGEWGH+SGDRECS+ E NP
Sbjct:  128 GRRPNEPVSIKEQVERFPMLKDAPVEGEYTSNIKVNFQPVGVKLRNIKCIRCGEWGHQSGDRECSLREFNP 198
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BLAST of mRNA_Ecto-sp13_S_contig69635.17973.1 vs. uniprot
Match: A0A067C9Y7_SAPPC (Cir_N domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C9Y7_SAPPC)

HSP 1 Score: 99.0 bits (245), Expect = 2.190e-23
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 GRRVNPGVSLAEQQERFPFLKDAPVEHAYAAGVKVNFKPFNNVIRHVRCMRCGEWGHRSGDRECSVDE-NPHD 216
            GRR N  +S+ +Q ERFP LKDAPVE  Y + ++VNF+P    +R+V+C+RCGEWGH+SGDRECS+ E NP D
Sbjct:  129 GRRPNEAISIKDQVERFPMLKDAPVEGEYTSNIRVNFQPVGVKLRNVKCIRCGEWGHQSGDRECSLREFNPLD 201
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BLAST of mRNA_Ecto-sp13_S_contig69635.17973.1 vs. uniprot
Match: A0A662Y2V8_9STRA (Cir_N domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y2V8_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.900e-23
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 GRRVNPGVSLAEQQERFPFLKDAPVEHAYAAGVKVNFKPFNNVIRHVRCMRCGEWGHRSGDRECSV-DENPH 213
            GRR    +++ +Q ERFP LKDAPVE  Y   V+VNFKP    +R+V+C+RCG+WGH+SGDREC + D+NPH
Sbjct:  126 GRRAEDPLTIKDQVERFPILKDAPVEGGYTDSVRVNFKPMGLQLRNVKCIRCGQWGHQSGDRECKLRDQNPH 197
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BLAST of mRNA_Ecto-sp13_S_contig69635.17973.1 vs. uniprot
Match: F0WVY7_9STRA (Protein kinase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WVY7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.380e-23
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 GRRVNPGVSLAEQQERFPFLKDAPVEHAYAAGVKVNFKPFNNVIRHVRCMRCGEWGHRSGDRECSVDE-NPHD 216
            GRR +  +++ EQ ERFPFLKDAPV+  Y   VKVNFKP    +R+VRC+RCGEWGH SGDREC +   NPHD
Sbjct:  176 GRRPDESLTIDEQVERFPFLKDAPVQGDYTGNVKVNFKPMGVQLRNVRCLRCGEWGHLSGDRECKLRNFNPHD 248
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BLAST of mRNA_Ecto-sp13_S_contig69635.17973.1 vs. uniprot
Match: W2P950_PHYPN (Cir_N domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=W2P950_PHYPN)

HSP 1 Score: 97.1 bits (240), Expect = 4.220e-23
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 GRRVNPGVSLAEQQERFPFLKDAPVEHAYAAGVKVNFKPFNNVIRHVRCMRCGEWGHRSGDRECSV-DENPHD 216
            GRR    +++ +Q ERFP LKDAPVE  Y   +KVNF P    +R+VRC+RCGEWGH+SGDREC + D+NP+D
Sbjct:  125 GRRAEETLTIKDQVERFPILKDAPVEGKYTETIKVNFNPLGLRLRNVRCIRCGEWGHQSGDRECKLRDQNPND 197
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69635.17973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIV8_ECTSI5.130e-46100.00Cir_N domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A5D6XYB1_9STRA4.340e-2564.38Cir_N domain-containing protein n=1 Tax=Pythium br... [more]
A0A8K1C5M5_PYTOL1.780e-2461.64Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024GR32_9STRA2.780e-2463.01Cir_N domain-containing protein n=1 Tax=Albugo can... [more]
K3X636_GLOUD3.490e-2463.01Cir_N domain-containing protein n=1 Tax=Globispora... [more]
A0A1W0A6W9_9STRA8.470e-2461.97Cir_N domain-containing protein n=1 Tax=Thraustoth... [more]
A0A067C9Y7_SAPPC2.190e-2358.90Cir_N domain-containing protein n=2 Tax=Saprolegni... [more]
A0A662Y2V8_9STRA2.900e-2356.94Cir_N domain-containing protein n=2 Tax=Nothophyto... [more]
F0WVY7_9STRA3.380e-2361.64Protein kinase putative n=1 Tax=Albugo laibachii N... [more]
W2P950_PHYPN4.220e-2357.53Cir_N domain-containing protein n=2 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69635contigEcto-sp13_S_contig69635:1..708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score160.6
Seed ortholog evalue2.7e-37
Seed eggNOG ortholog2880.D8LIV8
Preferred nameCIR1
Model size216
KEGG koko:K06066,ko:K14558
KEGG Pathwayko03008,ko04330,map03008,map04330
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000981,GO:0003006,GO:0003674,GO:0003676,GO:0003700,GO:0003705,GO:0003712,GO:0003714,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005815,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015630,GO:0016070,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034641,GO:0042826,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043621,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0140110,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
Exons2
EggNOG free text desc.RNA splicing
EggNOG OGsKOG3794@1,KOG3794@2759
Cds size216
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.0802214-CDS-Ecto-sp13_S_contig69635:0..1141681463956.0802214-CDS-Ecto-sp13_S_contig69635:0..114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69635 1..114 -
1681463956.0950243-CDS-Ecto-sp13_S_contig69635:606..7081681463956.0950243-CDS-Ecto-sp13_S_contig69635:606..708Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69635 607..708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69635.17973.1prot_Ecto-sp13_S_contig69635.17973.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69635 1..708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69635.17973.1

>prot_Ecto-sp13_S_contig69635.17973.1 ID=prot_Ecto-sp13_S_contig69635.17973.1|Name=mRNA_Ecto-sp13_S_contig69635.17973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
GRRVNPGVSLAEQQERFPFLKDAPVEHAYAAGVKVNFKPFNNVIRHVRCM
RCGEWGHRSGDRECSVDENPHD
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mRNA from alignment at Ecto-sp13_S_contig69635:1..708-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69635.17973.1 ID=mRNA_Ecto-sp13_S_contig69635.17973.1|Name=mRNA_Ecto-sp13_S_contig69635.17973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69635:1..708- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGGCGGGTAAACCCGGGCGTGTCCCTCGCGGAACAGCAGGAACGGTT
CCCGTTCCTCAAGGACGCGCCGGTGGAACACGCCTATGCGGCGGGGGTGA
AGGTGAGGGGCTTTGTGGGAGAGTAGGGAGTGCACGTTAGCCACAGTTTT
GGTTTCGGCGCTTGTGGCTGGGCGACGACGGGGCGCCCGAAGCCACTCCT
ACTGCTATGTATGCGAGGCGTTGGTGTTCTTCCCGGCGCGTTTGTGACTC
GTCTTTGTAGAGTTCGCCCTGGACGGCGGCTCATAACGTGCCCGTGCCTT
TTATGCGAGCTTTCGTGTTGTATCCTATCCTCCTCAACCATGGCCTCGTT
GCAAGGTACTTGGAATAGCGTTCTTTCGCTCGGACATCAAGGATAAAATA
TTAATATGAATACCGATCATGACGAGGTGAAACCCGTCCCGGCAAGAGAC
AGCTGAGATTTCAACCCACGTCAACAAGCTCTGTACGATATGTTGCATTT
TCAAGCCTTCCCATTTCTGATCTTTTGTCTCTTTCGTCCCGCTCTCCCTC
TTCATTTTTACGCCTCAATCGTTGATCAACGCGGCCCACGAAAGGTGAAT
TTCAAGCCTTTCAACAACGTTATCCGGCACGTCCGATGCATGCGCTGCGG
CGAGTGGGGGCACCGAAGTGGCGACCGCGAGTGCAGCGTCGACGAGAACC
CCCACGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69635:1..708-

>mRNA_Ecto-sp13_S_contig69635.17973.1 ID=mRNA_Ecto-sp13_S_contig69635.17973.1|Name=mRNA_Ecto-sp13_S_contig69635.17973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69635:1..708- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGGCGGGTAAACCCGGGCGTGTCCCTCGCGGAACAGCAGGAACGGTT
CCCGTTCCTCAAGGACGCGCCGGTGGAACACGCCTATGCGGCGGGGGTGA
AGGTGAATTTCAAGCCTTTCAACAACGTTATCCGGCACGTCCGATGCATG
CGCTGCGGCGAGTGGGGGCACCGAAGTGGCGACCGCGAGTGCAGCGTCGA
CGAGAACCCCCACGAC
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