mRNA_Ecto-sp13_S_contig6958.17969.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6958.17969.1
Unique NamemRNA_Ecto-sp13_S_contig6958.17969.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6958.17969.1 vs. uniprot
Match: D7G5Q2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q2_ECTSI)

HSP 1 Score: 578 bits (1489), Expect = 4.940e-203
Identity = 366/420 (87.14%), Postives = 374/420 (89.05%), Query Frame = 1 
Query:    1 MESNGVEEMNQLGGSGGTIQLALDALKDKKGSVDQVVDYCESSYLEPGANKREVWLRTEEYLKDALGSVVTDIEDMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRAREQSAATRLLDLRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADELPSSLSLASDTVTLPGSAAAGLGDAGSVAETADMWGEQNSSPSSSRVGGISDLPSPSVGGXXXXXS-SFKPDGSSASPAASPRQATAGGGDSARKKDRLGLAATARKAVAPVPVPALAPPPPARDPVVMNKRLSAKQARPTGGAVGSPPPLISRAKPXXXXXXXXXXXRGSSMSNVSSRPEGGSKPLPXXXXXXXQPSASSLFSVPEAQTPAPXXXXXXXXXKAPSQAEASXXXXXXXXXXVKQGECDDHLFF 1257
            ME NGVEEMNQLGGSGGTIQLALDALK+KKGSVDQVVDYCESSYLEPGANKREVWLRTEEYLKDALGSVV DIEDMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRAREQSAATRLL+LRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADE PSSLSLASD+ TLPGSAAAGLGDAGSVAETADMWGE NSSPSSSRVGGISDLPSPSVGG       SFKPDGSSASPAASPR+A AGGGDSA KKDRL LAA ARKAVAPVPVP +APPPPARDPVVMNKRLSAKQARP GGAVG+PPPL+SRAKPXXXXXXXXXXXRGSSMS+VSSRPEGGSKPLPXXXXXXX                  XXXXXXXXX         XXXXXXXXXXVKQGECDDHL F
Sbjct:    1 MERNGVEEMNQLGGSGGTIQLALDALKEKKGSVDQVVDYCESSYLEPGANKREVWLRTEEYLKDALGSVVADIEDMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRAREQSAATRLLELRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADEPPSSLSLASDSGTLPGSAAAGLGDAGSVAETADMWGEHNSSPSSSRVGGISDLPSPSVGGDGGGSPRSFKPDGSSASPAASPREAAAGGGDSASKKDRLDLAAAARKAVAPVPVPTMAPPPPARDPVVMNKRLSAKQARPAGGAVGAPPPLVSRAKPXXXXXXXXXXXRGSSMSSVSSRPEGGSKPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKQGECDDHLIF 420
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BLAST of mRNA_Ecto-sp13_S_contig6958.17969.1 vs. uniprot
Match: A0A6H5JRA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA6_9PHAE)

HSP 1 Score: 547 bits (1410), Expect = 1.530e-190
Identity = 317/354 (89.55%), Postives = 323/354 (91.24%), Query Frame = 1 
Query:    1 MESNGVEEMNQLGGSGGTIQLALDALKDKKGSVDQVVDYCESSYLEPGANKREVWLRTEEYLKDALGSVVTDIEDMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRAREQSAATRLLDLRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADELPSSLSLASDTVTLPGSAAAGLGDAGSVAETADMWGEQNSSPSSSRVGGISDLPSPSVGGXXXXXSSFKPDGSSASPAASPRQATAGGGDSARKKDRLGLAATARKAVAPVPVPALAPPPPARDPVVMNKRLSAKQARPTGGAVGSPPPLISRAKPXXXXXXXXXXXRGSSMSNVSSRPEGGSKPLP 1062
            MESNGVEEMNQLGGSGGTIQLALDALK+KKGSVDQVVDYCESSYLEPGANKREVWLRTEEYLKDALGSVVTDIE+MAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRARE SAATRLLDLRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADE PSSLSLASD+ TLPGSAAAGLGD GSVAETADMWGE NSSPSSSRVGGISDLPSPSVGG      SFKPDGSSASPAASPR+A AGGGD A KKDRLGLAA ARKAVAPV         PARDPVVMNKRLS KQ RP GGAVG+PPPL+SRAKPXXXXXXXXXXX  SSMSNVSSR EG SKPLP
Sbjct:    1 MESNGVEEMNQLGGSGGTIQLALDALKEKKGSVDQVVDYCESSYLEPGANKREVWLRTEEYLKDALGSVVTDIEEMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRARELSAATRLLDLRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYADEPPSSLSLASDSATLPGSAAAGLGDTGSVAETADMWGEHNSSPSSSRVGGISDLPSPSVGGGGGSPRSFKPDGSSASPAASPREAAAGGGDRASKKDRLGLAAAARKAVAPVXXXXXXXXXPARDPVVMNKRLSTKQPRPAGGAVGAPPPLVSRAKPXXXXXXXXXXXXXSSMSNVSSRLEGESKPLP 354
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BLAST of mRNA_Ecto-sp13_S_contig6958.17969.1 vs. uniprot
Match: A0A6S8RD25_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8RD25_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.500e-7
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:   55 IQLALDALKDKKGSVDQVVDYCESSYLEPGANKREVWLRTEEYLKDALGSVVTDIEDMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRAREQSAATRLLDLRRAAGETPARQKIVVLTGSER 423
            I  ALD L  K   V+ VV +CESSY     +K  V  +T+EYL DAL  V  ++E  +  L+ F++ Q +AVE +  ++   + RL  A+ Q+AA R+  L       P+R ++ VL  + R
Sbjct:  100 IPEALDELGRKHDYVNDVVQWCESSYQ--SGDKNMVLRQTKEYLVDALEVVAKEVETTSAKLIRFLSLQNDAVEGLGLELDAVRERLALAKAQNAAKRMEALCPERKREPSRPRLEVLDDAAR 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6958.17969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5Q2_ECTSI4.940e-20387.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRA6_9PHAE1.530e-19089.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S8RD25_9STRA4.500e-735.77Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6958contigEcto-sp13_S_contig6958:337..4788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1354
Hectar predicted targeting categoryno signal peptide or anchor
Exons4
Cds size114
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.9199584-UTR-Ecto-sp13_S_contig6958:336..4411681463955.9199584-UTR-Ecto-sp13_S_contig6958:336..441Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6958 337..441 +
1681463955.931823-UTR-Ecto-sp13_S_contig6958:2356..24101681463955.931823-UTR-Ecto-sp13_S_contig6958:2356..2410Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6958 2357..2410 +
1681463955.9426363-UTR-Ecto-sp13_S_contig6958:3168..32701681463955.9426363-UTR-Ecto-sp13_S_contig6958:3168..3270Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6958 3169..3270 +
1681463955.9531984-UTR-Ecto-sp13_S_contig6958:3695..46741681463955.9531984-UTR-Ecto-sp13_S_contig6958:3695..4674Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6958 3696..4674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.9636714-CDS-Ecto-sp13_S_contig6958:4674..47881681463955.9636714-CDS-Ecto-sp13_S_contig6958:4674..4788Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6958 4675..4788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6958.17969.1prot_Ecto-sp13_S_contig6958.17969.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6958 4675..4788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6958.17969.1

>prot_Ecto-sp13_S_contig6958.17969.1 ID=prot_Ecto-sp13_S_contig6958.17969.1|Name=mRNA_Ecto-sp13_S_contig6958.17969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
MTTFFFGSCWYDQSVSRYDELACESVGFVGSLFLIFQC
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mRNA from alignment at Ecto-sp13_S_contig6958:337..4788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6958.17969.1 ID=mRNA_Ecto-sp13_S_contig6958.17969.1|Name=mRNA_Ecto-sp13_S_contig6958.17969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4452bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6958:337..4788+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAGCAACGGCGTGGAGGAGATGAACCAGCTGGGAGGGAGCGGGGG
GACGATACAGCTCGCTCTTGATGCTCTCAAGGACAAGAAGGGCAGCGTGG
ACCAGGTGAGGCACCACTCCCGTTTCAGCTGCCGTTGCATACATACCATT
GCAGCAGCATCGGATGGAAGGAGGCTGGCGTGTCGAAAGCGAGAGAGACA
GGGATAGAGCCCACATGAACAAAAGACTTCCCACCACCAAGCATTCTCCC
GGCAAGCTCTGAGAGATCGTTTAATGACAGCCCCCGGCCGATATGGCAGA
CGTTACGAGCCTCACGCCCCTTCCAAAACGTAGCCCCCAGATTCCGATTC
CTCTCGAAGAGGCTCCGTGACATCTATCTCGGTGGTCCGATGTCTTACCG
TACATCATGTCGTTTGCAACTTTTCTCTGCAGGCGAAAGGTAGCTCGCTT
GTGTTTGTCGCCTTCACTGCGGTCTAGCAAGACCGTTCAGGATTCCGCAC
GTGTTGCAATCGCTGCTTTGAGTTGTTTTAGGGTAAAAGCCCCTTGTGCA
CACACAAACGTACGTCAGTTTTTCAGTTTTTTGCACGAGAGAGACCCTGC
TCTTTTTCTTCCCGAGGTTTGTACCATTTTCCAGTCCGTGGTCATGGATG
AGCTGTAGGGCGGAATTCTTCTCATGACGTGTGCGACTGCTGTTGTAGGA
TAAACAACACCATGGACATGATGTGCCCACTCCAAAGAATATCACTGCTT
GGATAACGATAGACCGTTTTGCATGTTCCTGCAGATCGATCGATCAGTTA
TAAGGTTTCGCGAACAAGTTGAACTTGTGGGTTTGGCGGCGTTTACGTTT
GAACAGCTTGAATGTGAACGCGTGTCATCCAATCGTGGGGCTAGAGAGGG
ACAGAGAGAGAGATACAGAGAAGCTCATTTCGTGATCACAAGCGGATTCT
TCTGCTAGAGCCTTGGTAGTTGCCGCGAGCAATTGTTTGAGGAAGCCAGC
GGACATGTATTACACACTCGTGTTCTCTGTTCTTTATGGCCAACCACAAG
ACTGACGTCTTTTCATTCATTGGTCAGCCAAATGAAGGGAAACCCACACA
CGGTCTGCTGCAAACCGCCCCGACAGAGGCAGCACGTGCAGTTCACACGT
GCACACAAGAGGACCGACCAACAGCCCATGTTTCGTTCCTTTTCAGCACC
CACCCTCTCGTTGTATTCCTACAGCCTTGCACCGGGTTGTATTTCTTCGT
GCAGTTAAGCGGTTGTCCGAGTGTATGGAGGGACGCCTGGACCGTTTCCC
ACATTGGCGTTGGCTCCTCACATTTAATGTTTTGGTTTCCCATGACTCTG
CGAAGAGTACAACAACCCTCAATTGGTCGTTTGCTTGTGACAACGGAGGC
ACCCGGGACAGCAAATGGACTAATGCGGATGTTGGAAGAGGTAACGGAAG
AGCGTTTCTACGGTGGAGACTACACCAACATGTGCAGCGCTTCTTTCCTC
TTCACCTTGTCTACCTTATTTCGGTGTTCTTTTGGTGTTCGATGAGATGT
GTATTCGCGACCAAGCACCACCAGGAGCCGCGAAAACAAACACAGACGGG
TGCAGACGGCAAAGGTTGCCACAGAAAGGGGGGGAATGAATGCTTGTTGC
TCCGTTGTCGGCTCTCTCTTTCGCTGATTGTGATGGCCACAACCCTTTTA
CACTCATGCGATATTGTGAAGCACCAGCAACTTGAGAAAACGAATTTCCA
CACAAGAACCCGTCACTACGCAATACATCAGTCTAATGGTTGAGAAGTTG
AAGGGTCTGATTTTCATCAAGAGTAATAAACTTGACTTTTCCACATCGAC
ACATCGACGCTTATTTAACCTACAAGTTCGCTGTTGGTTTTCCCCACTGA
CCGAGTACGGAGCGATGGTGGGGTAACGCAAGAGTTTCGCAAGTGGGAAG
CGTGCTCTTTACCCAAGCCTTGCTTTTGCTCGCCCATCTCTGCCGGCAAT
GTACGGGCGTGAACACGCAGGTGGTGGACTATTGCGAAAGCTCTTACCTG
GAACCGGGTGCCAACAAGAGAGAGGTGAGAGTCTTTCCGCGGAAGGATAG
ACGTGTGCATACATATGGCCTTCCTTTTATACCTACCCCCCGCTCGTCAA
CGGCTAATACTTGGGTTGGGTTATGTACGATGATGGGCGCCGTGCCTGTG
AACGACCGGGGGGTGGGAAGGCAAGAGCGCCCAACATGAAGCCGTATTCG
CGCACGCGCGGTAGCGATGCAGGCGCCTGGCGGATGCGTGGGCGCGGGGC
TATCACACCGTCCGTTGTAGTCGGCGTACAGAGACGTGATACACAGCAGC
AGCACACGGAAGGTCGTCGCATCCGCGGCTAGTGTGCCAGTATGACAGTT
CGTTCGAAACCCGGAGTATGTTTAACCCAAACCAGTATGTGCTACAGACA
ACAAGTCGGGGGTGGTCTTATACTCGTCGGCAAGACGACAAGGTATCGTC
ACTACCACTATATCAGGGTTCCGGGATAATCCCTGGAGGAGAGGCACGCG
ATGGCCAGCAAATTCCCAAGTCTGGGTTTCCTGGATGCCGACGAGTATTA
GACTACCCTAAACTTGTTGTGTTCTCACGCGTGTGTTGTGGAAAATGTGA
GCGTGAGCGCGTCGGTTATTGATACCAACCAGACCATATTGAGGGGCTGA
CGTGGTCGGAGTGGAATGTGTGTAGGGGGGGGTGGGGTAGCGAGCATTCC
GCGAGCCGAAATACTTCCGTTTACGATGTCGCATGTAAATCTCTTTGGTT
TTGCCGTGATCGCCTTGCAATTTTTTCGCAAGGTATGGTTGAGAACGGAG
GAGTACCTCAAGGACGCCCTCGGATCGGTTGTGACCGATATCGAGGACAT
GGCCATCAATCTCTTGACCTTCGTCAACGCACAGGTGAAGCACATCCCGT
GTAGACATGAAAAGGTTCGCGTTCCATCGTGGAGCTGTAGTTTAAGGCTT
GGTTTCTGGCGACGGGGGTGTCGTGACCTACGCTTGTCAAGCGTGGAATT
GCGATCCGTCTCGTCTTACAGTATTTATAGTGTTCTACCTCAGCAGAGTA
CAAGACGCCGGCGGTCGAGGTTTGGGAAGAGAGGCTCGACAAGAGTCAGA
CTTTGTGTACGCAGCAGTAATCGAGAGCTGCCTGACGCGGTACCGCCGTG
GCTGTTCCAAGCACTGTCTTTCACCCGCACCGTTGAGCCAAGAACGTTTC
TCCTCTCGAGCCCGAGAGAAAGTTTCCCGCCGACGCCGAACCGGCTTCCT
TTGCCTTCGTCGCCGCAACACCCTCGTTGCTTGTCGGTGTACGCACACGC
CCTCCTCAGGCCGAGGCGGTGGAGAAGGTGACGTCGGACGTTGTCATTGC
CAAGACCCGACTCAACCGTGCCCGGGAGCAGAGCGCGGCGACACGCCTCC
TCGACCTCCGAAGGGCCGCGGGCGAGACCCCGGCGCGGCAGAAGATCGTC
GTGCTCACGGGGTCGGAGCGGCCGACGAAGTGCCGGCCGCTGCCCCCGCG
GCGCCGGATATCTCTCAAGGAGAAGCTCGGGGGCATCTACGCCGACGAGC
TGCCGTCGTCACTGTCTCTCGCTTCTGACACGGTTACGCTGCCTGGGAGC
GCCGCCGCGGGGCTGGGGGACGCGGGCAGCGTCGCGGAAACGGCCGACAT
GTGGGGGGAGCAAAACAGCAGCCCGTCCTCTTCTAGGGTGGGAGGGATAT
CAGACCTGCCTTCTCCGTCCGTTGGCGGCGGCGGCGGGTCTCCCAGTTCG
TTCAAGCCCGACGGCTCCTCGGCCTCTCCGGCGGCTTCACCGCGGCAAGC
AACGGCCGGCGGCGGCGACAGCGCGAGGAAGAAGGACCGGTTGGGCCTAG
CGGCCACGGCTCGGAAGGCGGTCGCTCCGGTCCCGGTGCCGGCCTTGGCG
CCGCCGCCGCCTGCCCGCGACCCCGTCGTGATGAACAAGCGCCTGTCGGC
GAAGCAAGCACGCCCGACTGGCGGTGCGGTCGGGTCCCCGCCTCCGCTAA
TTTCGCGGGCGAAGCCGGGAGCGCCACCGCCGTTGCTTTCGCAGGCGGGC
CGCGGCTCCTCGATGTCGAACGTGTCCTCCCGTCCTGAGGGAGGGAGTAA
GCCGCTCCCGCCGCCTCCGCCGCCGCAGCGGCAGCCGTCGGCGTCGTCGC
TCTTTTCGGTACCCGAGGCGCAGACGCCCGCTCCTCCTCTTCCGCCCCCT
CCCCCGCCGCCGAAAGCCCCTTCGCAAGCGGAGGCATCTCCACCACTCCC
GCCGCCGCCCCCGCCGCCAGTTAAACAAGGCGAGTGCGATGACCACCTTT
TTTTTCGGCAGCTGTTGGTATGATCAATCAGTGTCTCGGTACGACGAGTT
AGCCTGCGAGTCAGTTGGATTTGTAGGATCATTATTCTTGATATTCCAAT
GT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6958:337..4788+

>mRNA_Ecto-sp13_S_contig6958.17969.1 ID=mRNA_Ecto-sp13_S_contig6958.17969.1|Name=mRNA_Ecto-sp13_S_contig6958.17969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6958:337..4788+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCACCTTTTTTTTCGGCAGCTGTTGGTATGATCAATCAGTGTCTCG
GTACGACGAGTTAGCCTGCGAGTCAGTTGGATTTGTAGGATCATTATTCT
TGATATTCCAATGT
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