mRNA_Ecto-sp13_S_contig6957.17967.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6957.17967.1
Unique NamemRNA_Ecto-sp13_S_contig6957.17967.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6957.17967.1 vs. uniprot
Match: D7FQZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ5_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.560e-44
Identity = 105/123 (85.37%), Postives = 107/123 (86.99%), Query Frame = 2 
Query:  533 ASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEVMGSGSSKGKXXXXXXXXXXXXSSRAAPPRDDYDYDRMGGGYXXXXXXXXXXXXXX----RWGGYDE 889
            ASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPF+KE+MGSGSSKGKXXXXXXXXXXXX  RAAP RDDYDYDR GGGY        XXXXXX    RWGGYDE
Sbjct:  273 ASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFIKEIMGSGSSKGKXXXXXXXXXXXXXXRAAPSRDDYDYDRQGGGYGYDDDGWDXXXXXXXXXXRWGGYDE 395
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BLAST of mRNA_Ecto-sp13_S_contig6957.17967.1 vs. uniprot
Match: A0A6H5KWX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX1_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.030e-38
Identity = 109/121 (90.08%), Postives = 110/121 (90.91%), Query Frame = 2 
Query:  533 ASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEVMGSGSSKGKXXXXXXXXXXXXSSRAAPPRDDYDYDRMGGGYXXXXXXXXXXXXXX-RWGGYDEQ 892
            ASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKE+MGSGSSKGKXXXXXXXXXXXX SRAAP RDDYD        XXXXXXXXXXXXXX RWGGYDEQ
Sbjct:  327 ASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEIMGSGSSKGKXXXXXXXXXXXXXSRAAPSRDDYDXXXXXXXXXXXXXXXXXXXXXXXRWGGYDEQ 447
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BLAST of mRNA_Ecto-sp13_S_contig6957.17967.1 vs. uniprot
Match: A0A6V1NTD6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NTD6_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 2.120e-15
Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 2 
Query:  539 KLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEVMGSG--SSKGKXXXXXXXXXXXXSSRAAPPR-----DDYDYDRM 814
            +LR +  FAVG FFV  G P+IG+  E+FGFLNLFGNM P+VW+M  NMPFV++++G+   SSKG              SR  P R     DD DYDR 
Sbjct:  185 RLRATGTFAVGVFFVLIGKPVIGMIFEIFGFLNLFGNMFPLVWSMTKNMPFVRDLVGNSPRSSKG-------------GSRQKPKRQQNYYDDDDYDRQ 270
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BLAST of mRNA_Ecto-sp13_S_contig6957.17967.1 vs. uniprot
Match: A0A835Z8R7_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8R7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.020e-13
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = 2 
Query:  536 SKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEVM 706
            +KLRG++IFA+GFF VFTGHPI+G+A EVFGFLNLFGNMLP++  MA  +P V +++
Sbjct:  585 TKLRGTIIFALGFFLVFTGHPILGIAAEVFGFLNLFGNMLPLLTMMARQLPVVGDLI 641
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BLAST of mRNA_Ecto-sp13_S_contig6957.17967.1 vs. uniprot
Match: F0YIZ2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIZ2_AURAN)

HSP 1 Score: 73.6 bits (179), Expect = 1.110e-12
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:  536 SKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFV 694
            +KLRGS+ FA GF  + +GHP++G+ +E+FGFLNLFGN+ P+  AM  N+PFV
Sbjct:   56 AKLRGSLCFACGFMLILSGHPLLGIVVEIFGFLNLFGNLFPLFTAMFKNLPFV 108
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BLAST of mRNA_Ecto-sp13_S_contig6957.17967.1 vs. uniprot
Match: A0A7S1XYC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYC5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.380e-12
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 2 
Query:  536 SKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEVMGSGSSK 724
            SKLRG+ +F++GF  +  G P +G+ +E+FG +NLFGNM PMVWA+   MP VKE+      K
Sbjct:   99 SKLRGTTVFSLGFLLMLNGRPFVGMILELFGIINLFGNMFPMVWAVVQRMPIVKELFRDSGGK 161
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BLAST of mRNA_Ecto-sp13_S_contig6957.17967.1 vs. uniprot
Match: A0A7S2XZL7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.080e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 2 
Query:  539 KLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEVMG 709
            K RG V F +G   VF GHP++G+ +E FG LNLFGNM P+VW+M   MPF+++++G
Sbjct:  189 KRRGGVTFCLGVVLVFMGHPVLGMLLEFFGILNLFGNMFPIVWSMVKKMPFIRDLVG 245
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BLAST of mRNA_Ecto-sp13_S_contig6957.17967.1 vs. uniprot
Match: A0A7S2G941_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G941_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.460e-11
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  536 SKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEVMGSGS 718
            SK+RGS   A GFF +  G PI G+ +E+FG LNLFGNM P++W+M   +PFV  ++   S
Sbjct:  149 SKMRGSATLAAGFFLILIGWPIFGMLVEIFGLLNLFGNMFPLLWSMLKRLPFVSALLSESS 209
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BLAST of mRNA_Ecto-sp13_S_contig6957.17967.1 vs. uniprot
Match: A0A7S1UWW3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWW3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.760e-10
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:  539 KLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEVMGSGSSKG 727
            K R +     G F VF G P+ G+A+EVFG LNLFGNM P++ A+   MPFVK V G G  +G
Sbjct:  150 KSRATACLCAGIFLVFIGWPVFGIALEVFGLLNLFGNMFPVLMAVLKQMPFVKSVFGGGRGRG 212
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BLAST of mRNA_Ecto-sp13_S_contig6957.17967.1 vs. uniprot
Match: A0A7R9U9B3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9B3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.620e-10
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 2 
Query:  536 SKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEV 703
            SKLRG+++FA GF F+  G   IG  +E+FG +NLFGNM P++W +   MP V+E+
Sbjct:  134 SKLRGAMVFATGFTFIMNGRSFIGFFLELFGIINLFGNMFPVLWNLVQRMPIVREL 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6957.17967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ5_ECTSI1.560e-4485.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWX1_9PHAE1.030e-3890.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1NTD6_HETAK2.120e-1548.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z8R7_9STRA1.020e-1364.91Mitochondrial carrier domain-containing protein n=... [more]
F0YIZ2_AURAN1.110e-1256.60Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S1XYC5_9STRA2.380e-1249.21Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2XZL7_9STRA1.080e-1152.63Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2G941_9STRA2.460e-1149.18Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1UWW3_9STRA2.760e-1050.79Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7R9U9B3_9STRA6.620e-1050.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6957contigEcto-sp13_S_contig6957:4979..7782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score90.9
Seed ortholog evalue3e-16
Seed eggNOG ortholog2880.D7FQZ5
Model size1008
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG0284@1,KOG1743@2759
EC2.5.1.18
Cds size246
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.7221284-UTR-Ecto-sp13_S_contig6957:4978..56231681463955.7221284-UTR-Ecto-sp13_S_contig6957:4978..5623Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6957 4979..5623 +
1681463955.7360506-UTR-Ecto-sp13_S_contig6957:7111..71151681463955.7360506-UTR-Ecto-sp13_S_contig6957:7111..7115Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6957 7112..7115 +
1681463955.7694879-UTR-Ecto-sp13_S_contig6957:7669..77821681463955.7694879-UTR-Ecto-sp13_S_contig6957:7669..7782Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6957 7670..7782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.747937-CDS-Ecto-sp13_S_contig6957:7115..71771681463955.747937-CDS-Ecto-sp13_S_contig6957:7115..7177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6957 7116..7177 +
1681463955.7588959-CDS-Ecto-sp13_S_contig6957:7485..76691681463955.7588959-CDS-Ecto-sp13_S_contig6957:7485..7669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6957 7486..7669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6957.17967.1prot_Ecto-sp13_S_contig6957.17967.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6957 7116..7669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6957.17967.1

>prot_Ecto-sp13_S_contig6957.17967.1 ID=prot_Ecto-sp13_S_contig6957.17967.1|Name=mRNA_Ecto-sp13_S_contig6957.17967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MLPMVWAMASNMPFVKEVMGSGSSKGKKGRSGNSSRQKRSSRAAPPRDDY
DYDRMGGGYGYDDDWDNGGGGGGRWGGYDEQ*
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mRNA from alignment at Ecto-sp13_S_contig6957:4979..7782+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6957.17967.1 ID=mRNA_Ecto-sp13_S_contig6957.17967.1|Name=mRNA_Ecto-sp13_S_contig6957.17967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6957:4979..7782+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGCGAAAGCTCGGGTTCGTGGCGGGGATGTCGCTCTTCATCGGCCCCA
GCAACGTCGTGCGGTACTTCACTCAGGTGTGTTTTCTTTTTTCGTTTCGG
GTAACTGCTGTAGTTAGTCACTGCGGGCTGATCGGGCCGTTTGGTGGGCA
TGGAGTAAGTTGTGGGGGCCAGTAGGCAGCAGTTAGATCTTGCATCCATA
TGGACATACCTCTCCGCATGTTGTAGCTATTGTACCGACAGGCAAGGGTT
CAACCCCACCCCCCGCGGTCTTGTGGTCAAGTTCTAGTTTTAGCAACACA
ACAATGCTCGGTCGTCTTGAGAGATTCATACCCAGTGGTCCCACATTCAC
GCAAGCAATGACTTGAGAGTACTTCAGCATCAAGTTTTGGCTTCATGAGA
CGATGCCGGGTCGTAAGAGAGATGCATACCCAATGGTCAACATTCTGACA
TGCAACGACCCGAGTGTACCTCGCCCCCTACCTGGTGAACGCCTTCTGTT
TCTCGTGGTGTGTGGGTCCTTGCGCTGAATAGGCCTCGAAGCTCAGGGGA
TCCGTCATTTTTGCGGTGGGTTTCTTCTTCGTATTCACGGGGCACCCCAT
CATTGGCCTCGCCATCGAGGTCTTCGGGTTCCTTAACCTCTTCGGGTGAG
CAAGGGGAAGACACAAAAACAAAAAAGAGAAAGACACAAAAAGAGAAGAA
AGACAGAGAGAAAAAACAGAACAAAAAGAAAGGAAAAAGTCAATGAAAAA
AGAAAGACAACGTAGGGAAGGAAAACAATAGGGATGGAATAATAATAGAA
GGAAAAAGGAAACAATGGTCGGGGAAACCGTAGAAATTCAACTTGGTCGT
CAAACAACACTTATCATTTCGTTGGTAATCAATCGCAGGCTTTATATCTG
TGGAAGAGATAATTTCTGATGTGTTGTTGTAAGAAAAATTAGGAAGAATA
CGGCCCTCGGCGCCTCGCTTCTGCTTCATCGTGATCACCCGTGTTGCAAG
TCCCCACAAAAAAACGTTTGTTTTTTTTTACTACAAGACATCGATCGCGC
GGAGCCCCTACAGCCGCCGAATTCCTATGAACAAGCCGTTATTCGCTGAC
AACTCCGGCTGTAGTGGCGATCAAAAAAGTGGCAAACCCTCTCAAGCAAC
CTGAGGCATTTCGCTACAGCGTGGTGCCAAAAAAAAAGTGGACGGTATTT
TTGAGAGCGGATAGGGCGTTGAAGGTCAAATTGCGGGGGAACTTGTCGGA
GATTTCCAACAAAATTCGAGGTAGACGCGTCGGGCGTGTTTGGTTGACAT
ACAGGCCATAAAGTGGTTCACTGGAACGACCTCGTAGTGGCGATCCCAAA
TTTGACCAACCTCTCAACGCTACCTATGCCTACGTTATACACTCCGGCGA
ACTTTCGAGCGAAATCGTCAACTCCTTGGCCCGCGGGTAGCAGCGTGAAG
TTTGGTGCTGAGAGCTGCGAACGGGCTTGAAGCAGCAGCTCTTTCACTTT
TGATAGCACGGCATTTGCCAGGTTCAGGGCGAAACCAGGCCGAACAAAAT
GTCTGCGCGTGTAGAACACAACATGCTTGAGGTATCCTGCAGGTTTCCAT
GGCACGTAGCGATCTGTGTGAGGAGCACCAGCAGTGACAAAGGTGTGCAC
CAGATGGTGCGCTGGGCAACCGATCATGGAGGGTTACGCGGGGTACCATC
GATTTTCGCCGAGGCCCTTTGTCATATTTTTTTGCTTTCTGTTGGACTTG
CAACACGGGTGTGATGCGGCTGCACGGCCGGGTCTCAGGAGACCACCCCC
CCCCCCCCAGGCTCTTTGTGCCAGTCTGTTTCCGTATCGAGTGCTTTCCC
GTGGTGTGTGCATCGACCCGTGCCATGGATGACTATGCCTCTTGTTGTGC
GTTGGCCTAGTTTTCCTTCGAATATTTCGGGCTCCTCGGCTTCTTGTTGG
GAGGCCAAAAATGGCGAGCGAACAGCAGCACATTTTTGTAGCATTCGGTT
TCTCGTCGGCAGACTGCTTGTCCATGTATCCCTGGGATCGGTTGGATGAA
GTTCTGCCGCCGGTTTGTGTTCTCTCACGCCTTGATTTTCCTCCCTCCTT
CTCTCTGCTGTTTTTTTTTCGTGGCTTGTTCAGAAACATGCTGCCGATGG
TGTGGGCTATGGCGAGCAACATGCCCTTCGTCAAGGAAGTCATGGGCAGG
TAAGCTTAGTCCCAACAACCTCTATTTTTCTCGTCTTGACTGCTGTAGTT
GTGATTGGTCTTCGGCTGTGCATACACACACAGTCGAAAAAGTCTTTTGG
AGAAATGCAGTTTTGCGTGCACACCCAAAATCGGTCAGTTGTTTGTATGT
TTTCTCTCAAGAGACTCCCGCAGCAGGCACAACCAGGGCAAGATCGTACA
CTTTCTTCCCCAGCCGCAATGACTGAGGAGTGTTCCCCGTGTGTCCGTCC
CCCTCCCACCCGTTTCCTTTCCAAACGAACCAACGAACGTACAAACGCGT
TAATTAGCGGGTCCTCAAAGGGGAAGAAAGGACGGAGCGGCAACAGCAGC
AGACAGAAGCGATCTTCCCGCGCGGCGCCTCCTCGCGACGACTACGACTA
CGACCGAATGGGCGGTGGCTACGGCTACGATGACGACTGGGACAATGGAG
GCGGCGGCGGCGGCCGGTGGGGGGGCTACGACGAGCAATAGGCATTTTTT
ACTCCCCTGATATTGTCATGGACGCTTTCCTTTCGACTTCCCACCAACGT
TGATTGTGGGGCTCTTCGGCTTGGCTTGTCTGTGTGAGGGGGTGCGGGTG
GGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6957:4979..7782+

>mRNA_Ecto-sp13_S_contig6957.17967.1 ID=mRNA_Ecto-sp13_S_contig6957.17967.1|Name=mRNA_Ecto-sp13_S_contig6957.17967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6957:4979..7782+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCCGATGGTGTGGGCTATGGCGAGCAACATGCCCTTCGTCAAGGA
AGTCATGGGCAGCGGGTCCTCAAAGGGGAAGAAAGGACGGAGCGGCAACA
GCAGCAGACAGAAGCGATCTTCCCGCGCGGCGCCTCCTCGCGACGACTAC
GACTACGACCGAATGGGCGGTGGCTACGGCTACGATGACGACTGGGACAA
TGGAGGCGGCGGCGGCGGCCGGTGGGGGGGCTACGACGAGCAATAG
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