prot_Ecto-sp13_S_contig6957.17966.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6957.17966.1
Unique Nameprot_Ecto-sp13_S_contig6957.17966.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length140
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6957.17966.1 vs. uniprot
Match: A0A6H5KWX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX1_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 3.300e-48
Identity = 114/131 (87.02%), Postives = 119/131 (90.84%), Query Frame = 0 
Query:    9 MVLTYSCALLALTLCATPPSLGSAKTAAGYRAAAALQRQQHQRRSGRLGAKDGGEAGRSLLEHPQAAXXXXXXXXXXXXXXXXXXGRGGLGRIRAAGSGRCEAKVTGREAAAAAADGIRLAGLEAALGLAR 139
            MVLT+SCALLALTLCATPPSLGSAKTA GYRAAA LQRQQHQ RSGRLGA +GGEAG S+LEHPQAA    XXXXXXXXXXXXXX +GGLGRIRAAG+GR EAKVTGREAAAAAADGIR AGLEAALGLAR
Sbjct:    1 MVLTFSCALLALTLCATPPSLGSAKTAVGYRAAATLQRQQHQHRSGRLGANNGGEAGWSILEHPQAAATSAXXXXXXXXXXXXXXXQGGLGRIRAAGNGRREAKVTGREAAAAAADGIRSAGLEAALGLAR 131
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BLAST of mRNA_Ecto-sp13_S_contig6957.17966.1 vs. uniprot
Match: D7FQZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ5_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 3.380e-47
Identity = 104/133 (78.20%), Postives = 107/133 (80.45%), Query Frame = 0 
Query:    9 MVLTYSCALLALTLCATPPSLGSAKTAAGYRAAAALQRQQHQRRSGRLGAKDGGEAGRSLLEHPQAAXXXXXXXXXXXXXXXXXXGRGGLGRIRAAGSGRCEAKVTGREAA--AAAADGIRLAGLEAALGLAR 139
            MVLTYSCALLALTLCATPPSLGSAKTAAGYRAAA LQRQQHQRRSGRLGA DG EAGRSLLEHPQAA             XXXXX RGGLGR RAAG+GRC AK TG+EA   AAAADGIR  G EAA+GLAR
Sbjct:    1 MVLTYSCALLALTLCATPPSLGSAKTAAGYRAAATLQRQQHQRRSGRLGANDGAEAGRSLLEHPQAAATPAAHIRRRDKNXXXXXRRGGLGRTRAAGNGRCAAKATGKEAXXXAAAADGIRSTGFEAAVGLAR 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6957.17966.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWX1_9PHAE3.300e-4887.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQZ5_ECTSI3.380e-4778.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..139
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.759
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6957contigEcto-sp13_S_contig6957:1762..2181 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6957.17966.1mRNA_Ecto-sp13_S_contig6957.17966.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6957 1675..2181 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6957.17966.1 ID=prot_Ecto-sp13_S_contig6957.17966.1|Name=mRNA_Ecto-sp13_S_contig6957.17966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MEHHRGTAMVLTYSCALLALTLCATPPSLGSAKTAAGYRAAAALQRQQHQ
RRSGRLGAKDGGEAGRSLLEHPQAAATSAAHIRRRDNNSWWWGGRGGLGR
IRAAGSGRCEAKVTGREAAAAAADGIRLAGLEAALGLAR*
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