mRNA_Ecto-sp13_S_contig6957.17966.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6957.17966.1
Unique NamemRNA_Ecto-sp13_S_contig6957.17966.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6957.17966.1 vs. uniprot
Match: A0A6H5KWX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX1_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 7.070e-48
Identity = 114/131 (87.02%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:  112 MVLTYSCALLALTLCATPPSLGSAKTAAGYRAAAALQRQQHQRRSGRLGAKDGGEAGRSLLEHPQAAXXXXXXXXXXXXXXXXXXGRGGLGRIRAAGSGRCEAKVTGREAAAAAADGIRLAGLEAALGLAR 504
            MVLT+SCALLALTLCATPPSLGSAKTA GYRAAA LQRQQHQ RSGRLGA +GGEAG S+LEHPQAA    XXXXXXXXXXXXXX +GGLGRIRAAG+GR EAKVTGREAAAAAADGIR AGLEAALGLAR
Sbjct:    1 MVLTFSCALLALTLCATPPSLGSAKTAVGYRAAATLQRQQHQHRSGRLGANNGGEAGWSILEHPQAAATSAXXXXXXXXXXXXXXXQGGLGRIRAAGNGRREAKVTGREAAAAAADGIRSAGLEAALGLAR 131
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6957.17966.1 vs. uniprot
Match: D7FQZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ5_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 7.190e-47
Identity = 104/133 (78.20%), Postives = 107/133 (80.45%), Query Frame = 1 
Query:  112 MVLTYSCALLALTLCATPPSLGSAKTAAGYRAAAALQRQQHQRRSGRLGAKDGGEAGRSLLEHPQAAXXXXXXXXXXXXXXXXXXGRGGLGRIRAAGSGRCEAKVTGREAA--AAAADGIRLAGLEAALGLAR 504
            MVLTYSCALLALTLCATPPSLGSAKTAAGYRAAA LQRQQHQRRSGRLGA DG EAGRSLLEHPQAA             XXXXX RGGLGR RAAG+GRC AK TG+EA   AAAADGIR  G EAA+GLAR
Sbjct:    1 MVLTYSCALLALTLCATPPSLGSAKTAAGYRAAATLQRQQHQRRSGRLGANDGAEAGRSLLEHPQAAATPAAHIRRRDKNXXXXXRRGGLGRTRAAGNGRCAAKATGKEAXXXAAAADGIRSTGFEAAVGLAR 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6957.17966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWX1_9PHAE7.070e-4887.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQZ5_ECTSI7.190e-4778.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6957contigEcto-sp13_S_contig6957:1675..2181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score167.9
Seed ortholog evalue3.3e-39
Seed eggNOG ortholog2880.D7FQZ5
Model size507
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG0284@1,KOG1743@2759
Ec32 ortholog descriptionVesicle transport protein, Got1/SFT2-like
Ec32 orthologEc-09_003160.1
EC2.5.1.18
Cds size420
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.6580436-UTR-Ecto-sp13_S_contig6957:1674..17611681463955.6580436-UTR-Ecto-sp13_S_contig6957:1674..1761Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6957 1675..1761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.6720495-CDS-Ecto-sp13_S_contig6957:1761..21811681463955.6720495-CDS-Ecto-sp13_S_contig6957:1761..2181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6957 1762..2181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6957.17966.1prot_Ecto-sp13_S_contig6957.17966.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6957 1762..2181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6957.17966.1

>prot_Ecto-sp13_S_contig6957.17966.1 ID=prot_Ecto-sp13_S_contig6957.17966.1|Name=mRNA_Ecto-sp13_S_contig6957.17966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MEHHRGTAMVLTYSCALLALTLCATPPSLGSAKTAAGYRAAAALQRQQHQ
RRSGRLGAKDGGEAGRSLLEHPQAAATSAAHIRRRDNNSWWWGGRGGLGR
IRAAGSGRCEAKVTGREAAAAAADGIRLAGLEAALGLAR*
back to top

mRNA from alignment at Ecto-sp13_S_contig6957:1675..2181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6957.17966.1 ID=mRNA_Ecto-sp13_S_contig6957.17966.1|Name=mRNA_Ecto-sp13_S_contig6957.17966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6957:1675..2181+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGCGGAGAAAATGGGTACCTATTATATTTAACGTGCAATTACCTGCGT
ACCCCCTTGAATTTACCCTCCGAGCTTTGAGGCAGCCATGGAGCATCACA
GAGGAACGGCCATGGTGCTCACCTACTCTTGCGCGCTGCTCGCGCTAACA
TTATGTGCCACACCGCCGTCCCTGGGCTCGGCGAAGACGGCCGCAGGATA
CCGCGCCGCTGCCGCTCTGCAACGGCAACAACATCAGCGCCGGAGCGGGC
GGCTTGGCGCCAAGGACGGCGGGGAGGCGGGACGGTCGCTTTTGGAGCAC
CCACAAGCGGCTGCTACATCAGCAGCCCACATCAGGCGACGAGATAACAA
CTCGTGGTGGTGGGGAGGGCGGGGAGGGCTCGGCCGAATCCGGGCTGCTG
GTAGCGGTCGTTGCGAGGCGAAGGTCACCGGGAGGGAAGCAGCAGCAGCA
GCAGCGGACGGGATTCGCTTGGCGGGCTTAGAGGCGGCGCTTGGCTTGGC
GAGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6957:1675..2181+

>mRNA_Ecto-sp13_S_contig6957.17966.1 ID=mRNA_Ecto-sp13_S_contig6957.17966.1|Name=mRNA_Ecto-sp13_S_contig6957.17966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6957:1675..2181+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCATCACAGAGGAACGGCCATGGTGCTCACCTACTCTTGCGCGCT
GCTCGCGCTAACATTATGTGCCACACCGCCGTCCCTGGGCTCGGCGAAGA
CGGCCGCAGGATACCGCGCCGCTGCCGCTCTGCAACGGCAACAACATCAG
CGCCGGAGCGGGCGGCTTGGCGCCAAGGACGGCGGGGAGGCGGGACGGTC
GCTTTTGGAGCACCCACAAGCGGCTGCTACATCAGCAGCCCACATCAGGC
GACGAGATAACAACTCGTGGTGGTGGGGAGGGCGGGGAGGGCTCGGCCGA
ATCCGGGCTGCTGGTAGCGGTCGTTGCGAGGCGAAGGTCACCGGGAGGGA
AGCAGCAGCAGCAGCAGCGGACGGGATTCGCTTGGCGGGCTTAGAGGCGG
CGCTTGGCTTGGCGAGGTGA
back to top