mRNA_Ecto-sp13_S_contig6956.17965.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6956.17965.1
Unique NamemRNA_Ecto-sp13_S_contig6956.17965.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6956.17965.1 vs. uniprot
Match: D8LJM9_ECTSI (Brix domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJM9_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 3.290e-45
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    1 MKTSLGHVGNKAKRTELYRKQKGNKKAEQKDRXXXXXXEAQELGEEAPPKQKPKTLESTRDPDRTVVKPADDEVFRDEAEDEFARFFSNEQ 273
            MKTSLGH+GNKAKRTELYRKQKGNKKAEQKDRXXXXXXEAQELGEEAPPKQKPKTLESTRDPDRTVVKPADDEVFRDEAEDEFARFFSNEQ
Sbjct:    1 MKTSLGHIGNKAKRTELYRKQKGNKKAEQKDRXXXXXXEAQELGEEAPPKQKPKTLESTRDPDRTVVKPADDEVFRDEAEDEFARFFSNEQ 91
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BLAST of mRNA_Ecto-sp13_S_contig6956.17965.1 vs. uniprot
Match: A0A482V5T6_9ARCH (Brix domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V5T6_9ARCH)

HSP 1 Score: 81.6 bits (200), Expect = 1.190e-17
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:   16 GHVGNKAKRTELYRKQKGNKKAEQKDRXXXXXXEAQELGEEAPPKQKPKTLESTRDPDRTVVKPADDEVFRDEAEDEFARFFSNE 270
            GH+ NK KR+E+Y K KG KK  +K+       E +ELGE APPKQ P+T+E+TR  D T V P DDE+  DE +DEF++ FSNE
Sbjct:    5 GHIKNKVKRSEVYAKYKGQKKKLKKELRKLREKEVEELGEAAPPKQIPRTIENTRKHDETFVDPEDDEIAGDEKDDEFSKIFSNE 89
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BLAST of mRNA_Ecto-sp13_S_contig6956.17965.1 vs. uniprot
Match: A0A7S2LC39_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LC39_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.060e-15
Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:   16 GHVGNKAKRTELYRKQKGNKKAEQKDRXXXXXXEAQELGEEAPPKQKPKTLESTRDPDRTVVKPADDEVFRDEAEDEFARFFSNE 270
            GH+ NK KR+E+Y K    KKA ++        EA+ LGE+AP KQ P+TL++TR+ + T V+P D+E+  DEAEDEFA +FS+E
Sbjct:    5 GHIKNKLKRSEIYGKYLLEKKARKRQTRIQRDKEAEALGEDAPKKQTPRTLDNTRESEVTTVQPDDEEILADEAEDEFAPYFSDE 89
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BLAST of mRNA_Ecto-sp13_S_contig6956.17965.1 vs. uniprot
Match: A0A2R5GTI3_9STRA (Ribosome production factor 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTI3_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.060e-14
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:   13 LGHVGNKAKRTELYRKQKGNKKAEQKDRXXXXXXEAQELGEEAPPKQKPKTLESTRDPDRTVVKPADDEVFRDEAEDEFARFFSN 267
            +  + NKAKR ++ +K K +K+  +++R      EAQELGE+APPKQ PKT +STR+ D TVV P D+EV  DE +DEF+ +F+N
Sbjct:    4 VNDIRNKAKRAQIRQKLKVDKEKAKQERKLKRKREAQELGEDAPPKQVPKTQDSTREADNTVVAPDDEEVLADEEQDEFSEYFAN 88
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BLAST of mRNA_Ecto-sp13_S_contig6956.17965.1 vs. uniprot
Match: A0A7M7JZC0_VARDE (Brix domain-containing protein n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7JZC0_VARDE)

HSP 1 Score: 75.9 bits (185), Expect = 2.650e-14
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 MKTSLGHVGNKAKRTELYRKQKGNKKAEQKDRXXXXXXEAQELGEEAPPKQKPKTLESTRDPDRTVVKPADDEVFRDEAEDEFARFFSNE 270
            M  ++  + NKAKR E+Y K K  K  EQ++       EA+ LGE APPKQ P+TLE+TR+PD T+++P D+EV  D   DEFA +F+ E
Sbjct:   30 MVKNISEIRNKAKRREIYLKLKKQKNKEQREARQRRVKEAKALGENAPPKQIPRTLENTREPDETMLQPGDEEVNLDNLTDEFASYFARE 119
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BLAST of mRNA_Ecto-sp13_S_contig6956.17965.1 vs. uniprot
Match: A0A4D9CX49_9STRA (Brix domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX49_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.850e-13
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:    1 MKTSLGHVGNKAKRTELYRKQKGNKKAEQKDRXXXXXXEAQELGEEAPPKQKPKTLESTRDPDRTVVKPADDEVFRDEAEDEFARFFSNEQ 273
            +K  +  + N+ KR E++ K K  KK  +K        EA ELG+EAPPKQ P+TLE+TR+ D T+V+P D EV  DEAEDEF  +FS ++
Sbjct:    2 VKKEVSRIRNRCKRREVHAKVKAEKKKVKKSERTKRQREALELGDEAPPKQVPRTLENTREVDETIVQPDDLEVVADEAEDEFQPYFSGKE 92
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BLAST of mRNA_Ecto-sp13_S_contig6956.17965.1 vs. uniprot
Match: A0A8J6CED4_DIALT (Brix domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CED4_DIALT)

HSP 1 Score: 73.2 bits (178), Expect = 2.040e-13
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:   22 VGNKAKRTELYRKQKGNKKAEQKDRXXXXXXEAQELGEEAPPKQKPKTLESTRDPDRTVVKPADDEVFRDEAEDEFARFFS 264
            VGNK KR EL  K K NKK E+K R      EA+ LG EAPPKQ PK+L++ R+ D TVV+P D+EV  ++A DEFA  F+
Sbjct:    8 VGNKLKRAELAFKDKANKKKEKKQRQIERRKEAEALGSEAPPKQVPKSLDTMREYDETVVQPDDEEVMGEDAIDEFAEHFT 88
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BLAST of mRNA_Ecto-sp13_S_contig6956.17965.1 vs. uniprot
Match: A0A7S2S9M3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9M3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 7.570e-13
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:    1 MKTSLGHVGNKAKRTELYRKQKGNKKAEQKDRXXXXXXEAQELGEEAP-PKQKPKTLESTRDPDRTVVKPADDEVFRDEAEDEFARFFSNE 270
            ++ + G + NK KR+E+Y K    KKA +K++      +A+ELGE+A   KQ P+TLES R+ ++T+V+P DDE+  DEAEDEFA++FS+E
Sbjct:   27 VRANPGKIKNKLKRSEMYGKYLLEKKAMKKEKRLARDKKAEELGEDAQHDKQVPRTLESAREMEQTMVRPDDDEIVADEAEDEFAKYFSDE 117
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BLAST of mRNA_Ecto-sp13_S_contig6956.17965.1 vs. uniprot
Match: K0RZU9_THAOC (Brix domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RZU9_THAOC)

HSP 1 Score: 71.6 bits (174), Expect = 1.020e-12
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:   16 GHVGNKAKRTELYRKQKGNKKAEQKDRXXXXXXEAQELGEEAPPKQKPKTLESTRDPDRTVVKPADDEVFRDEAEDEFARFFSNE 270
            GH+ NK KR+E+Y K    KKA+++        +A+ LGE+AP K KP+TL++TR+ + T VK  D+E+  DEAEDEFA +FS+E
Sbjct:   34 GHITNKLKRSEMYGKYLLAKKAQKRASRIAREKQAEALGEDAPAKPKPRTLDNTRESEVTTVKEDDEEIIADEAEDEFAPYFSDE 118
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BLAST of mRNA_Ecto-sp13_S_contig6956.17965.1 vs. uniprot
Match: A0A7S1HW22_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HW22_9EUGL)

HSP 1 Score: 68.6 bits (166), Expect = 1.120e-11
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 MKTSLGHVGNKAKRTELYRKQKGNKKAEQKDRXXXXXXEAQELGEEAPPKQKPKTLESTRDPDRTVVKPADDEVFRDEAEDEFARFFSNE 270
            ++ + G + +K KR E Y K K  +K E+ +       E +ELG+ APPKQ PKTL+S R PD T+V   D+E+ +DE EDE+A +F +E
Sbjct:   12 VRNTTGQIKDKIKRREAYMKLKQQRKQEKYENRMRKKKEREELGDAAPPKQMPKTLDSMRTPDETMVDEQDEEIQKDEDEDEWASYFKDE 101
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6956.17965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJM9_ECTSI3.290e-4598.90Brix domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A482V5T6_9ARCH1.190e-1752.94Brix domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S2LC39_9STRA5.060e-1549.41Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A2R5GTI3_9STRA2.060e-1449.41Ribosome production factor 1 n=1 Tax=Hondaea ferme... [more]
A0A7M7JZC0_VARDE2.650e-1447.78Brix domain-containing protein n=1 Tax=Varroa dest... [more]
A0A4D9CX49_9STRA1.850e-1347.25Brix domain-containing protein n=2 Tax=Monodopsida... [more]
A0A8J6CED4_DIALT2.040e-1354.32Brix domain-containing protein n=2 Tax=Diacronema ... [more]
A0A7S2S9M3_9STRA7.570e-1347.25Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
K0RZU9_THAOC1.020e-1248.24Brix domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7S1HW22_9EUGL1.120e-1143.33Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6956contigEcto-sp13_S_contig6956:6049..7851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score159.5
Seed ortholog evalue7.6e-37
Seed eggNOG ortholog2880.D8LJM9
Preferred nameRPF1
Model size273
KEGG koko:K14846
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000054,GO:0000055,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033750,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0065003,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons2
EggNOG free text desc.rRNA primary transcript binding
EggNOG OGsCOG2136@1,KOG2780@2759
Ec32 ortholog descriptionBrix domain
Ec32 orthologEc-17_002670.1
Cds size273
COG Functional cat.AJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.6170173-CDS-Ecto-sp13_S_contig6956:6048..61831681463955.6170173-CDS-Ecto-sp13_S_contig6956:6048..6183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6956 6049..6183 +
1681463955.6287265-CDS-Ecto-sp13_S_contig6956:7713..78511681463955.6287265-CDS-Ecto-sp13_S_contig6956:7713..7851Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6956 7714..7851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6956.17965.1prot_Ecto-sp13_S_contig6956.17965.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6956 6049..7851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6956.17965.1

>prot_Ecto-sp13_S_contig6956.17965.1 ID=prot_Ecto-sp13_S_contig6956.17965.1|Name=mRNA_Ecto-sp13_S_contig6956.17965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MKTSLGHVGNKAKRTELYRKQKGNKKAEQKDRRRRREREAQELGEEAPPK
QKPKTLESTRDPDRTVVKPADDEVFRDEAEDEFARFFSNEQ
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mRNA from alignment at Ecto-sp13_S_contig6956:6049..7851+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6956.17965.1 ID=mRNA_Ecto-sp13_S_contig6956.17965.1|Name=mRNA_Ecto-sp13_S_contig6956.17965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1803bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6956:6049..7851+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGACAAGCCTAGGGCATGTCGGCAACAAAGCCAAGAGGACAGAGCT
CTACCGCAAGCAGAAAGGAAACAAGAAGGCGGAGCAGAAGGACCGACGGA
GAAGACGAGAGAGGGAGGCCCAAGAGCTTGGGGAGGTGAGCGGTATGATC
TCGTGTTTAGGCGTGTGGTTAGCCGTGCAGTGTATGTAGTCTGTGGTACT
GCCGGCGCCTGCCTTGATGGTGGCTGGTCCCGACCCTACAGCAAGTCTGG
ATGGCATCCAATACGCGGCAGGTCCTCGTCCTACAACAAACCTACCGCAC
ACCGGCTACTTTTTCAGCAGCCGGCTTGCGTTGAAAGGTGTTGGCCTGGG
CCGTGGTAAGCAGTGTCAAGACTAAGTAGGAGATTCTGTGTGCGCAGGTA
GGTGCCGTTCGTTGTGTAGGCTCATTCTTGCGACGGGTGCAGGTGCCAAA
CCACGGCTTCCACCTCCTTCCACATCGTCAGTTTGGGTGTTTCGGTGGGT
AGGTGTCATGATGCAGACGAACTTCCACCTGCTTCCACATCGTCAGTTTG
GGTGTTTCGGTGGGTAGGTGTCATGATACAGACGAACTCTTGTGAGTAGA
AAGAAAGTTTGGCACCGGTGGCGAAAAGCTTATCCCCGAAATATGGTCAT
TTTATGGTGCCTTCGCCGTAGCTAGTTTAGAGCCGGGGCACAGCAGCAGT
AGCTATAGCAACAGCAGCAATAGCAGCAGTATTAGCAGCAGCATGCCTTT
GTACAGCATATGTGCGTGGCTAGAAACGGAACGGTGGCGCACCACGTTCT
GCTGCAGTGGTGCCTGAGATGCCCAGGGGCGTAGATGCAGTAGTTTCACG
CCGCATGTCTGTTAAACTCCCTGTCCAGGTAGACTCAATAAGCTACCACA
CCTAGAATAAGCAGGATACCAAGTCGTTGCACATGTAGCGCACAATGTTC
AGCAGCCGACCCACTGTGCACAAAACAAGCAAGGGCGGACCGGGCGTTTG
AGTCTGTCCTGGTATCACGAGCAACCGCCCCCCGCTGTTTTCCAAGTAGG
CGTTTTTCTCGGCAACGGACTCATTCTCCGGAACTGCGATTTCGCCTGAG
GATGTTGACTTCAAAGACGTCCGCAACGAGTTTCTTTCTTCCCACCATCT
GATGGTGAAATTGCCCACGCCCCCGACGGTCAAGTTCAAATTTGACTGCG
GCTTCGAATGTGAAGACCATGTTCATGTAGTCGCGGAATGTCAGTTGTAC
GAAGAGGAGAGGAAAGTGTACATGAGTGAGCTGGGAAAAATACAAGGGAG
GTACAGGGAGATGTTTGAGGCATGGAATAGAGAGTAGAGGACGGTAACTG
TACCAGGGAGTAGGAGATGGTTTGAAAAGGCGGGAAGGGATATCGTTGGG
ATCGATAGACTAGGGAAGACATTTTTGAGCCACCTTTGGCAGGAAGGATT
GGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGGAGAC
GCGTGGTCAATGGCCTAACCGCTAAGGCATGCAAGACATGAGAGTACGCC
CCCCCCCCCCGACGCTCGTTCTCTCGAGGACGCGAGGTCAATGGTCGAAC
CTCCAAGGCATGCAAAACATAAGAGTACACACACCCCCGCGCTGTCCTCT
GCTGGATCCCCGCAGGAAGCGCCTCCCAAGCAGAAGCCCAAGACCCTCGA
GAGCACTCGAGATCCAGACCGGACGGTGGTAAAGCCAGCCGACGACGAGG
TGTTTAGGGATGAGGCGGAGGATGAGTTCGCGAGGTTCTTCAGCAACGAA
CAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6956:6049..7851+

>mRNA_Ecto-sp13_S_contig6956.17965.1 ID=mRNA_Ecto-sp13_S_contig6956.17965.1|Name=mRNA_Ecto-sp13_S_contig6956.17965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6956:6049..7851+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGACAAGCCTAGGGCATGTCGGCAACAAAGCCAAGAGGACAGAGCT
CTACCGCAAGCAGAAAGGAAACAAGAAGGCGGAGCAGAAGGACCGACGGA
GAAGACGAGAGAGGGAGGCCCAAGAGCTTGGGGAGGAAGCGCCTCCCAAG
CAGAAGCCCAAGACCCTCGAGAGCACTCGAGATCCAGACCGGACGGTGGT
AAAGCCAGCCGACGACGAGGTGTTTAGGGATGAGGCGGAGGATGAGTTCG
CGAGGTTCTTCAGCAACGAACAG
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