mRNA_Ecto-sp13_S_contig69540.17961.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69540.17961.1
Unique NamemRNA_Ecto-sp13_S_contig69540.17961.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69540.17961.1 vs. uniprot
Match: D8LS27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS27_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 7.570e-12
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 PLHLAALEGMDELVSSLLLRGADKDALSVLGKTPLMLASR 120
            PLHLAALEGMDEL SSLLLR AD+DALSVLGKTPLM ASR
Sbjct:   25 PLHLAALEGMDELASSLLLREADEDALSVLGKTPLMRASR 64
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BLAST of mRNA_Ecto-sp13_S_contig69540.17961.1 vs. uniprot
Match: A0A6H5K663_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K663_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.310e-7
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    1 PLHLAALEGMDELVSSLLLRGADKDALSVLGK 96
            P HLAALEGMDELVSSLLLRGADKDALSVLGK
Sbjct:  120 PRHLAALEGMDELVSSLLLRGADKDALSVLGK 151
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69540.17961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS27_ECTSI7.570e-1290.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K663_9PHAE1.310e-796.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69540contigEcto-sp13_S_contig69540:7..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size504
Hectar predicted targeting categoryother localisation
Exons1
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.3463595-UTR-Ecto-sp13_S_contig69540:6..331681463955.3463595-UTR-Ecto-sp13_S_contig69540:6..33Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig69540 7..33 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.359051-CDS-Ecto-sp13_S_contig69540:33..5101681463955.359051-CDS-Ecto-sp13_S_contig69540:33..510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69540 34..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69540.17961.1prot_Ecto-sp13_S_contig69540.17961.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69540 34..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69540.17961.1

>prot_Ecto-sp13_S_contig69540.17961.1 ID=prot_Ecto-sp13_S_contig69540.17961.1|Name=mRNA_Ecto-sp13_S_contig69540.17961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MDELVSSLLLRGADKDALSVLGKTPLMLASRWGHLSAVHALLAAGADVTA
MEPLGRSALGYAAKGGYVDVLEAIIGHGADVNARGDLNETALHTAARRDG
AGAVNALIEVGADINARAYDGTTPLMYAALFNRRDSVLALLERGASLAGE
DSDGSTALH
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mRNA from alignment at Ecto-sp13_S_contig69540:7..510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69540.17961.1 ID=mRNA_Ecto-sp13_S_contig69540.17961.1|Name=mRNA_Ecto-sp13_S_contig69540.17961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69540:7..510+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCTCCACCTGGCTGCTCTCGAAGGGATGGACGAGTTAGTGTCTAGCCT
CTTGCTCAGGGGGGCGGACAAAGATGCTCTCAGCGTCCTAGGCAAGACAC
CGCTGATGCTTGCGTCCAGGTGGGGTCATTTGTCTGCCGTGCATGCTCTG
TTGGCTGCTGGTGCTGATGTCACTGCCATGGAGCCGCTCGGTCGCTCGGC
CCTAGGATATGCCGCTAAAGGCGGATACGTTGACGTGCTAGAAGCCATCA
TCGGACATGGGGCAGATGTGAACGCCCGCGGCGATTTGAACGAGACCGCG
CTTCACACCGCTGCTCGCCGCGACGGGGCGGGTGCTGTAAACGCACTGAT
CGAGGTTGGGGCTGATATCAACGCGAGAGCGTACGATGGGACAACACCTC
TCATGTATGCGGCGTTGTTCAACAGGAGGGATTCTGTGCTTGCCCTCTTG
GAGCGCGGCGCTTCCTTGGCAGGGGAAGACAGCGACGGAAGTACGGCGCT
ACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69540:7..510+

>mRNA_Ecto-sp13_S_contig69540.17961.1 ID=mRNA_Ecto-sp13_S_contig69540.17961.1|Name=mRNA_Ecto-sp13_S_contig69540.17961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69540:7..510+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAGTTAGTGTCTAGCCTCTTGCTCAGGGGGGCGGACAAAGATGC
TCTCAGCGTCCTAGGCAAGACACCGCTGATGCTTGCGTCCAGGTGGGGTC
ATTTGTCTGCCGTGCATGCTCTGTTGGCTGCTGGTGCTGATGTCACTGCC
ATGGAGCCGCTCGGTCGCTCGGCCCTAGGATATGCCGCTAAAGGCGGATA
CGTTGACGTGCTAGAAGCCATCATCGGACATGGGGCAGATGTGAACGCCC
GCGGCGATTTGAACGAGACCGCGCTTCACACCGCTGCTCGCCGCGACGGG
GCGGGTGCTGTAAACGCACTGATCGAGGTTGGGGCTGATATCAACGCGAG
AGCGTACGATGGGACAACACCTCTCATGTATGCGGCGTTGTTCAACAGGA
GGGATTCTGTGCTTGCCCTCTTGGAGCGCGGCGCTTCCTTGGCAGGGGAA
GACAGCGACGGAAGTACGGCGCTACAC
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