prot_Ecto-sp13_S_contig6953.17957.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig6953.17957.1
Unique Name	prot_Ecto-sp13_S_contig6953.17957.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	247

Homology

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BLAST of mRNA_Ecto-sp13_S_contig6953.17957.1 vs. uniprot
Match: Q8QNN4_ESV1K (EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN4_ESV1K)

HSP 1 Score: 177 bits (450), Expect = 1.330e-51
Identity = 115/214 (53.74%), Postives = 154/214 (71.96%), Query Frame = 0

Query:   33 VLARFVIMSILRTTSTFVEFAGETVINSTSFIVXXXXXXXXXXXXXXXXXXXXXLNQLVSIWRVVVTIITTLLGESCFLTKTVFRRMVDAFKDLILSIKAFGEGFKGLAPVMKAQTTDFQSGVGVKAVIKQSVASFKQSATYIVLGDEGSLTDGLLPNVFFELFKVLPLSFDLGKVILVGTLGVAKEAMSSSASILRELVSLKGISLGCSGKTS 246
            +L RFV+M++LR+ ++ V F GET IN      XXXXXXXXXXXXXXXXXXXXX  QLVS+WR+VVTI+T  LGE+C+L      R+ D F D +LS++AF  G  GLA V+KAQ  D ++GV + ++I Q++ SF  +  YI+ GDE   +DG++PN+F E+FK+LPLSFDLGK+IL GT  ++KE +  + S L+EL SL+GI  GC GK S
Sbjct:   52 ILVRFVVMTLLRSLASTVSFIGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLVSVWRLVVTILTATLGETCYLATNGIGRVFDFFSDYLLSLQAFSSGLPGLAKVLKAQADDVKTGVNLGSIISQAIQSFVDTLVYILKGDENKFSDGIVPNLFTEVFKLLPLSFDLGKLILQGTFDISKETLGVAFSSLKELASLRGIVAGCRGKAS 265

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6953.17957.1 vs. uniprot
Match: D8LP64_ECTSI (EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP64_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.690e-15
Identity = 67/118 (56.78%), Postives = 84/118 (71.19%), Query Frame = 0

Query:   40 MSILRTTSTFVEFAGETVINSTSFIVXXXXXXXXXXXXXXXXXXXXXLNQLVSIWRVVVTIITTLLGESCFLTKTVFRRMVDAFKDLILSIKAFGEGFKGLAPVMKAQTTDFQSGVGV 157
            M++LR+ ++ V F GET IN      XXXXXXXXXXXXXXXXXXXXX +QLVS+WR+VV IIT  LGE+C+L      R+ D F D +LS++AF  G  GLA V+KAQ  D ++GV V
Sbjct:    1 MTLLRSLASTVSFVGETTINXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLVSVWRLVVVIITATLGETCYLATNGIDRVFDFFSDYMLSLQAFRSGLPGLAKVLKAQVDDVKTGVNV 118

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6953.17957.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6953.17957.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Q8QNN4_ESV1K	1.330e-51	53.74	EsV-1-27 n=1 Tax=Ectocarpus siliculosus virus 1 (i...	[more]
D8LP64_ECTSI	3.690e-15	56.78	EsV-1-27 n=1 Tax=Ectocarpus siliculosus TaxID=2880...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 117..246
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 44..62
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 93..116
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 88..92
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..43
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 63..87
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 15..37
None	No IPR available	TMHMM	TMhelix		coord: 90..112
None	No IPR available	TMHMM	TMhelix		coord: 58..80

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6953	contig	Ecto-sp13_S_contig6953:4440..5180 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6953.17957.1	mRNA_Ecto-sp13_S_contig6953.17957.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig6953 4440..5180 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig6953.17957.1 ID=prot_Ecto-sp13_S_contig6953.17957.1|Name=mRNA_Ecto-sp13_S_contig6953.17957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp
MLKPIAKILEGVVAGTIALTLSTVSNAILLAVVLARFVIMSILRTTSTFV
EFAGETVINSTSFIVETVFSILTFVVQTVTNSLLFLLNQLVSIWRVVVTI
ITTLLGESCFLTKTVFRRMVDAFKDLILSIKAFGEGFKGLAPVMKAQTTD
FQSGVGVKAVIKQSVASFKQSATYIVLGDEGSLTDGLLPNVFFELFKVLP
LSFDLGKVILVGTLGVAKEAMSSSASILRELVSLKGISLGCSGKTS*